Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS12295 and HMPREF1058_RS12290 are separated by 67 nucleotides HMPREF1058_RS12290 and HMPREF1058_RS12285 are separated by 102 nucleotides
HMPREF1058_RS12295: HMPREF1058_RS12295 - OprO/OprP family phosphate-selective porin, at 150,282 to 151,469
_RS12295
HMPREF1058_RS12290: HMPREF1058_RS12290 - DUF3109 family protein, at 151,537 to 152,118
_RS12290
HMPREF1058_RS12285: HMPREF1058_RS12285 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 152,221 to 153,735
_RS12285
Position (kb) 151
152
153 Strain fitness (log2 ratio) -2
-1
0
1
2 at 150.679 kb on + strand, within HMPREF1058_RS12295 at 150.680 kb on - strand, within HMPREF1058_RS12295 at 150.680 kb on - strand, within HMPREF1058_RS12295 at 150.694 kb on + strand, within HMPREF1058_RS12295 at 150.694 kb on + strand, within HMPREF1058_RS12295 at 150.702 kb on - strand, within HMPREF1058_RS12295 at 150.722 kb on + strand, within HMPREF1058_RS12295 at 150.723 kb on - strand, within HMPREF1058_RS12295 at 150.723 kb on - strand, within HMPREF1058_RS12295 at 150.790 kb on - strand, within HMPREF1058_RS12295 at 150.995 kb on + strand, within HMPREF1058_RS12295 at 151.010 kb on + strand, within HMPREF1058_RS12295 at 151.011 kb on - strand, within HMPREF1058_RS12295 at 151.145 kb on + strand, within HMPREF1058_RS12295 at 151.222 kb on - strand, within HMPREF1058_RS12295 at 151.224 kb on + strand, within HMPREF1058_RS12295 at 151.225 kb on - strand, within HMPREF1058_RS12295 at 151.251 kb on - strand, within HMPREF1058_RS12295 at 151.376 kb on + strand at 151.376 kb on + strand at 151.437 kb on + strand at 151.438 kb on - strand at 151.442 kb on + strand at 151.459 kb on - strand at 151.508 kb on - strand at 151.519 kb on - strand at 151.521 kb on + strand at 151.522 kb on - strand at 151.587 kb on + strand at 151.637 kb on + strand at 151.637 kb on + strand, within HMPREF1058_RS12290 at 151.638 kb on - strand, within HMPREF1058_RS12290 at 151.638 kb on - strand, within HMPREF1058_RS12290 at 151.640 kb on - strand, within HMPREF1058_RS12290 at 151.640 kb on - strand, within HMPREF1058_RS12290 at 151.666 kb on + strand, within HMPREF1058_RS12290 at 151.681 kb on - strand, within HMPREF1058_RS12290 at 151.700 kb on + strand, within HMPREF1058_RS12290 at 151.715 kb on + strand, within HMPREF1058_RS12290 at 151.733 kb on - strand, within HMPREF1058_RS12290 at 151.769 kb on + strand, within HMPREF1058_RS12290 at 151.769 kb on + strand, within HMPREF1058_RS12290 at 151.783 kb on - strand, within HMPREF1058_RS12290 at 151.815 kb on - strand, within HMPREF1058_RS12290 at 151.835 kb on + strand, within HMPREF1058_RS12290 at 151.835 kb on + strand, within HMPREF1058_RS12290 at 151.846 kb on + strand, within HMPREF1058_RS12290 at 151.847 kb on - strand, within HMPREF1058_RS12290 at 151.847 kb on - strand, within HMPREF1058_RS12290 at 151.847 kb on - strand, within HMPREF1058_RS12290 at 152.095 kb on + strand at 152.107 kb on + strand at 152.108 kb on - strand at 152.114 kb on - strand at 152.124 kb on - strand at 152.126 kb on + strand at 152.223 kb on - strand at 152.562 kb on - strand, within HMPREF1058_RS12285
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 150,679 + HMPREF1058_RS12295 0.33 -0.7 150,680 - HMPREF1058_RS12295 0.34 +1.1 150,680 - HMPREF1058_RS12295 0.34 +0.5 150,694 + HMPREF1058_RS12295 0.35 -0.7 150,694 + HMPREF1058_RS12295 0.35 -0.6 150,702 - HMPREF1058_RS12295 0.35 +0.1 150,722 + HMPREF1058_RS12295 0.37 -2.1 150,723 - HMPREF1058_RS12295 0.37 +0.2 150,723 - HMPREF1058_RS12295 0.37 +0.2 150,790 - HMPREF1058_RS12295 0.43 -1.4 150,995 + HMPREF1058_RS12295 0.60 -0.8 151,010 + HMPREF1058_RS12295 0.61 -0.2 151,011 - HMPREF1058_RS12295 0.61 +0.1 151,145 + HMPREF1058_RS12295 0.73 -0.1 151,222 - HMPREF1058_RS12295 0.79 -1.0 151,224 + HMPREF1058_RS12295 0.79 -2.6 151,225 - HMPREF1058_RS12295 0.79 +1.9 151,251 - HMPREF1058_RS12295 0.82 -0.1 151,376 + +0.4 151,376 + +0.2 151,437 + +0.1 151,438 - -0.7 151,442 + -1.0 151,459 - -0.5 151,508 - -0.1 151,519 - +0.2 151,521 + -0.9 151,522 - -0.0 151,587 + -0.3 151,637 + +0.4 151,637 + HMPREF1058_RS12290 0.17 +2.4 151,638 - HMPREF1058_RS12290 0.17 +0.4 151,638 - HMPREF1058_RS12290 0.17 +0.7 151,640 - HMPREF1058_RS12290 0.18 +0.6 151,640 - HMPREF1058_RS12290 0.18 +1.0 151,666 + HMPREF1058_RS12290 0.22 -0.5 151,681 - HMPREF1058_RS12290 0.25 +0.3 151,700 + HMPREF1058_RS12290 0.28 -0.2 151,715 + HMPREF1058_RS12290 0.31 +0.5 151,733 - HMPREF1058_RS12290 0.34 +0.2 151,769 + HMPREF1058_RS12290 0.40 +0.5 151,769 + HMPREF1058_RS12290 0.40 -0.2 151,783 - HMPREF1058_RS12290 0.42 +0.2 151,815 - HMPREF1058_RS12290 0.48 +1.9 151,835 + HMPREF1058_RS12290 0.51 -0.3 151,835 + HMPREF1058_RS12290 0.51 +0.4 151,846 + HMPREF1058_RS12290 0.53 -0.1 151,847 - HMPREF1058_RS12290 0.53 -2.7 151,847 - HMPREF1058_RS12290 0.53 +0.1 151,847 - HMPREF1058_RS12290 0.53 +0.8 152,095 + -0.3 152,107 + +0.2 152,108 - +0.2 152,114 - +0.5 152,124 - +0.4 152,126 + -1.9 152,223 - +0.9 152,562 - HMPREF1058_RS12285 0.23 +0.4
Or see this region's nucleotide sequence