Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS12170

Experiment: Xylan from corn core 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS12175 and HMPREF1058_RS12170 are separated by 213 nucleotidesHMPREF1058_RS12170 and HMPREF1058_RS12165 are separated by 20 nucleotides HMPREF1058_RS12175: HMPREF1058_RS12175 - MFS transporter AraJ, at 184,119 to 185,279 _RS12175 HMPREF1058_RS12170: HMPREF1058_RS12170 - hypothetical protein, at 185,493 to 185,741 _RS12170 HMPREF1058_RS12165: HMPREF1058_RS12165 - radical SAM protein, at 185,762 to 186,832 _RS12165 Position (kb) 185 186Strain fitness (log2 ratio) -2 -1 0 1 2at 184.571 kb on + strand, within HMPREF1058_RS12175at 184.571 kb on + strand, within HMPREF1058_RS12175at 184.618 kb on + strand, within HMPREF1058_RS12175at 184.619 kb on - strand, within HMPREF1058_RS12175at 184.619 kb on - strand, within HMPREF1058_RS12175at 184.619 kb on - strand, within HMPREF1058_RS12175at 184.655 kb on + strand, within HMPREF1058_RS12175at 184.721 kb on + strand, within HMPREF1058_RS12175at 184.763 kb on - strand, within HMPREF1058_RS12175at 184.794 kb on - strand, within HMPREF1058_RS12175at 184.821 kb on + strand, within HMPREF1058_RS12175at 184.821 kb on + strand, within HMPREF1058_RS12175at 184.823 kb on + strand, within HMPREF1058_RS12175at 184.823 kb on + strand, within HMPREF1058_RS12175at 184.823 kb on + strand, within HMPREF1058_RS12175at 184.824 kb on - strand, within HMPREF1058_RS12175at 184.824 kb on - strand, within HMPREF1058_RS12175at 185.045 kb on + strand, within HMPREF1058_RS12175at 185.048 kb on - strand, within HMPREF1058_RS12175at 185.052 kb on - strand, within HMPREF1058_RS12175at 185.072 kb on + strand, within HMPREF1058_RS12175at 185.072 kb on + strand, within HMPREF1058_RS12175at 185.133 kb on + strand, within HMPREF1058_RS12175at 185.172 kb on - strandat 185.175 kb on + strandat 185.176 kb on - strandat 185.176 kb on - strandat 185.177 kb on + strandat 185.217 kb on + strandat 185.322 kb on + strandat 185.383 kb on - strandat 185.401 kb on + strandat 185.436 kb on - strandat 185.659 kb on - strand, within HMPREF1058_RS12170at 185.660 kb on + strand, within HMPREF1058_RS12170at 185.661 kb on - strand, within HMPREF1058_RS12170at 185.763 kb on + strandat 185.769 kb on - strandat 185.799 kb on + strandat 185.840 kb on + strandat 185.842 kb on + strandat 185.843 kb on - strandat 185.867 kb on - strandat 185.874 kb on + strand, within HMPREF1058_RS12165at 185.878 kb on + strand, within HMPREF1058_RS12165at 185.878 kb on + strand, within HMPREF1058_RS12165at 185.879 kb on - strand, within HMPREF1058_RS12165at 185.906 kb on - strand, within HMPREF1058_RS12165at 185.906 kb on - strand, within HMPREF1058_RS12165at 185.906 kb on - strand, within HMPREF1058_RS12165at 185.968 kb on + strand, within HMPREF1058_RS12165at 185.968 kb on + strand, within HMPREF1058_RS12165at 185.983 kb on + strand, within HMPREF1058_RS12165at 185.998 kb on - strand, within HMPREF1058_RS12165at 186.019 kb on - strand, within HMPREF1058_RS12165at 186.021 kb on - strand, within HMPREF1058_RS12165at 186.023 kb on - strand, within HMPREF1058_RS12165at 186.023 kb on - strand, within HMPREF1058_RS12165at 186.024 kb on + strand, within HMPREF1058_RS12165at 186.024 kb on + strand, within HMPREF1058_RS12165at 186.025 kb on - strand, within HMPREF1058_RS12165at 186.025 kb on - strandat 186.072 kb on + strand, within HMPREF1058_RS12165at 186.073 kb on - strand, within HMPREF1058_RS12165at 186.086 kb on - strandat 186.104 kb on - strand, within HMPREF1058_RS12165at 186.104 kb on - strand, within HMPREF1058_RS12165at 186.216 kb on + strand, within HMPREF1058_RS12165at 186.219 kb on + strand, within HMPREF1058_RS12165at 186.219 kb on + strand, within HMPREF1058_RS12165at 186.219 kb on + strand, within HMPREF1058_RS12165at 186.227 kb on - strand, within HMPREF1058_RS12165at 186.254 kb on + strand, within HMPREF1058_RS12165at 186.319 kb on + strand, within HMPREF1058_RS12165at 186.375 kb on + strand, within HMPREF1058_RS12165at 186.438 kb on + strand, within HMPREF1058_RS12165at 186.510 kb on + strand, within HMPREF1058_RS12165at 186.523 kb on + strand, within HMPREF1058_RS12165at 186.533 kb on - strand, within HMPREF1058_RS12165at 186.568 kb on + strandat 186.569 kb on - strand, within HMPREF1058_RS12165at 186.675 kb on - strand, within HMPREF1058_RS12165at 186.706 kb on + strand, within HMPREF1058_RS12165at 186.707 kb on - strand, within HMPREF1058_RS12165

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C)
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184,571 + HMPREF1058_RS12175 0.39 +0.2
184,571 + HMPREF1058_RS12175 0.39 -1.1
184,618 + HMPREF1058_RS12175 0.43 -0.2
184,619 - HMPREF1058_RS12175 0.43 +2.4
184,619 - HMPREF1058_RS12175 0.43 +0.6
184,619 - HMPREF1058_RS12175 0.43 +0.9
184,655 + HMPREF1058_RS12175 0.46 +0.5
184,721 + HMPREF1058_RS12175 0.52 -0.6
184,763 - HMPREF1058_RS12175 0.55 -0.6
184,794 - HMPREF1058_RS12175 0.58 +0.3
184,821 + HMPREF1058_RS12175 0.60 -0.5
184,821 + HMPREF1058_RS12175 0.60 -1.3
184,823 + HMPREF1058_RS12175 0.61 +1.9
184,823 + HMPREF1058_RS12175 0.61 -0.2
184,823 + HMPREF1058_RS12175 0.61 -0.3
184,824 - HMPREF1058_RS12175 0.61 -0.1
184,824 - HMPREF1058_RS12175 0.61 -0.5
185,045 + HMPREF1058_RS12175 0.80 -1.5
185,048 - HMPREF1058_RS12175 0.80 -0.4
185,052 - HMPREF1058_RS12175 0.80 +0.3
185,072 + HMPREF1058_RS12175 0.82 +0.6
185,072 + HMPREF1058_RS12175 0.82 +1.7
185,133 + HMPREF1058_RS12175 0.87 -0.5
185,172 - -0.6
185,175 + -0.1
185,176 - -0.1
185,176 - -0.9
185,177 + -1.3
185,217 + -0.5
185,322 + -0.5
185,383 - +0.7
185,401 + +0.2
185,436 - -0.5
185,659 - HMPREF1058_RS12170 0.67 +0.6
185,660 + HMPREF1058_RS12170 0.67 -1.3
185,661 - HMPREF1058_RS12170 0.67 +0.7
185,763 + +1.9
185,769 - +1.0
185,799 + -2.3
185,840 + +0.4
185,842 + -1.0
185,843 - -0.4
185,867 - -1.3
185,874 + HMPREF1058_RS12165 0.10 -0.3
185,878 + HMPREF1058_RS12165 0.11 +1.0
185,878 + HMPREF1058_RS12165 0.11 -0.1
185,879 - HMPREF1058_RS12165 0.11 +1.3
185,906 - HMPREF1058_RS12165 0.13 -0.2
185,906 - HMPREF1058_RS12165 0.13 -0.4
185,906 - HMPREF1058_RS12165 0.13 -0.9
185,968 + HMPREF1058_RS12165 0.19 -0.1
185,968 + HMPREF1058_RS12165 0.19 -1.2
185,983 + HMPREF1058_RS12165 0.21 +1.5
185,998 - HMPREF1058_RS12165 0.22 +0.3
186,019 - HMPREF1058_RS12165 0.24 -1.2
186,021 - HMPREF1058_RS12165 0.24 +0.2
186,023 - HMPREF1058_RS12165 0.24 -0.9
186,023 - HMPREF1058_RS12165 0.24 +0.9
186,024 + HMPREF1058_RS12165 0.24 -0.2
186,024 + HMPREF1058_RS12165 0.24 +0.2
186,025 - HMPREF1058_RS12165 0.25 -1.5
186,025 - +0.6
186,072 + HMPREF1058_RS12165 0.29 +0.3
186,073 - HMPREF1058_RS12165 0.29 -0.2
186,086 - +0.4
186,104 - HMPREF1058_RS12165 0.32 +1.0
186,104 - HMPREF1058_RS12165 0.32 -0.3
186,216 + HMPREF1058_RS12165 0.42 -0.2
186,219 + HMPREF1058_RS12165 0.43 -0.3
186,219 + HMPREF1058_RS12165 0.43 -0.8
186,219 + HMPREF1058_RS12165 0.43 +0.0
186,227 - HMPREF1058_RS12165 0.43 +0.7
186,254 + HMPREF1058_RS12165 0.46 +1.2
186,319 + HMPREF1058_RS12165 0.52 +0.0
186,375 + HMPREF1058_RS12165 0.57 -0.0
186,438 + HMPREF1058_RS12165 0.63 +0.8
186,510 + HMPREF1058_RS12165 0.70 +0.1
186,523 + HMPREF1058_RS12165 0.71 -0.4
186,533 - HMPREF1058_RS12165 0.72 +0.5
186,568 + +0.2
186,569 - HMPREF1058_RS12165 0.75 -0.2
186,675 - HMPREF1058_RS12165 0.85 +1.1
186,706 + HMPREF1058_RS12165 0.88 +0.2
186,707 - HMPREF1058_RS12165 0.88 -0.5

Or see this region's nucleotide sequence