Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11220 and HMPREF1058_RS11215 are separated by 30 nucleotides HMPREF1058_RS11215 and HMPREF1058_RS11210 are separated by 162 nucleotides
HMPREF1058_RS11220: HMPREF1058_RS11220 - RNA methyltransferase, at 430,277 to 430,813
_RS11220
HMPREF1058_RS11215: HMPREF1058_RS11215 - DUF4294 domain-containing protein, at 430,844 to 431,350
_RS11215
HMPREF1058_RS11210: HMPREF1058_RS11210 - helix-hairpin-helix domain-containing protein, at 431,513 to 433,585
_RS11210
Position (kb) 430
431
432 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 430.111 kb on - strand at 430.209 kb on + strand at 430.210 kb on - strand at 430.210 kb on - strand at 430.210 kb on - strand at 430.210 kb on - strand at 430.210 kb on - strand at 430.212 kb on - strand at 430.234 kb on + strand at 430.265 kb on - strand at 430.313 kb on - strand at 430.389 kb on + strand, within HMPREF1058_RS11220 at 430.437 kb on - strand at 430.570 kb on + strand, within HMPREF1058_RS11220 at 431.083 kb on + strand, within HMPREF1058_RS11215 at 431.083 kb on + strand, within HMPREF1058_RS11215 at 431.084 kb on - strand, within HMPREF1058_RS11215 at 431.086 kb on - strand, within HMPREF1058_RS11215 at 431.158 kb on + strand, within HMPREF1058_RS11215 at 431.161 kb on - strand, within HMPREF1058_RS11215 at 431.239 kb on - strand, within HMPREF1058_RS11215 at 431.292 kb on - strand, within HMPREF1058_RS11215 at 431.297 kb on - strand, within HMPREF1058_RS11215 at 431.318 kb on - strand at 431.318 kb on - strand at 431.333 kb on + strand at 431.334 kb on - strand at 431.340 kb on - strand at 431.340 kb on - strand at 431.346 kb on - strand at 431.362 kb on + strand at 431.399 kb on + strand at 431.421 kb on - strand at 431.421 kb on - strand at 431.470 kb on + strand at 431.477 kb on + strand at 431.560 kb on + strand at 431.561 kb on - strand at 431.665 kb on + strand at 431.710 kb on + strand at 431.716 kb on + strand at 431.777 kb on - strand, within HMPREF1058_RS11210 at 431.777 kb on - strand, within HMPREF1058_RS11210 at 431.799 kb on - strand, within HMPREF1058_RS11210 at 431.799 kb on - strand, within HMPREF1058_RS11210 at 431.806 kb on + strand, within HMPREF1058_RS11210 at 431.864 kb on + strand, within HMPREF1058_RS11210 at 431.869 kb on - strand, within HMPREF1058_RS11210 at 431.912 kb on - strand, within HMPREF1058_RS11210 at 431.921 kb on - strand, within HMPREF1058_RS11210 at 432.060 kb on - strand, within HMPREF1058_RS11210 at 432.060 kb on - strand, within HMPREF1058_RS11210 at 432.080 kb on - strand, within HMPREF1058_RS11210 at 432.189 kb on - strand, within HMPREF1058_RS11210 at 432.189 kb on - strand, within HMPREF1058_RS11210 at 432.203 kb on - strand, within HMPREF1058_RS11210 at 432.207 kb on + strand, within HMPREF1058_RS11210 at 432.225 kb on + strand, within HMPREF1058_RS11210 at 432.246 kb on + strand, within HMPREF1058_RS11210 at 432.252 kb on - strand, within HMPREF1058_RS11210
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 430,111 - -0.4 430,209 + -0.6 430,210 - +0.1 430,210 - +0.5 430,210 - -1.5 430,210 - +0.3 430,210 - +2.9 430,212 - +0.1 430,234 + +0.0 430,265 - +0.3 430,313 - +1.0 430,389 + HMPREF1058_RS11220 0.21 -0.2 430,437 - +2.5 430,570 + HMPREF1058_RS11220 0.55 -0.6 431,083 + HMPREF1058_RS11215 0.47 +3.1 431,083 + HMPREF1058_RS11215 0.47 +2.8 431,084 - HMPREF1058_RS11215 0.47 -1.0 431,086 - HMPREF1058_RS11215 0.48 +0.8 431,158 + HMPREF1058_RS11215 0.62 +1.1 431,161 - HMPREF1058_RS11215 0.63 -0.4 431,239 - HMPREF1058_RS11215 0.78 -0.7 431,292 - HMPREF1058_RS11215 0.88 -2.0 431,297 - HMPREF1058_RS11215 0.89 +1.1 431,318 - -0.2 431,318 - +1.9 431,333 + +0.1 431,334 - -0.2 431,340 - +1.5 431,340 - +0.3 431,346 - -2.0 431,362 + +1.9 431,399 + +1.9 431,421 - +2.1 431,421 - -0.1 431,470 + +2.2 431,477 + +0.4 431,560 + -2.0 431,561 - -2.2 431,665 + +0.5 431,710 + -0.1 431,716 + -0.2 431,777 - HMPREF1058_RS11210 0.13 -0.5 431,777 - HMPREF1058_RS11210 0.13 -0.5 431,799 - HMPREF1058_RS11210 0.14 -1.4 431,799 - HMPREF1058_RS11210 0.14 -0.9 431,806 + HMPREF1058_RS11210 0.14 +0.1 431,864 + HMPREF1058_RS11210 0.17 -2.0 431,869 - HMPREF1058_RS11210 0.17 -1.7 431,912 - HMPREF1058_RS11210 0.19 +0.5 431,921 - HMPREF1058_RS11210 0.20 -1.1 432,060 - HMPREF1058_RS11210 0.26 -1.2 432,060 - HMPREF1058_RS11210 0.26 -1.0 432,080 - HMPREF1058_RS11210 0.27 +0.2 432,189 - HMPREF1058_RS11210 0.33 +1.7 432,189 - HMPREF1058_RS11210 0.33 -0.4 432,203 - HMPREF1058_RS11210 0.33 -0.6 432,207 + HMPREF1058_RS11210 0.33 +0.3 432,225 + HMPREF1058_RS11210 0.34 +1.3 432,246 + HMPREF1058_RS11210 0.35 -0.4 432,252 - HMPREF1058_RS11210 0.36 -0.6
Or see this region's nucleotide sequence