Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11080 and HMPREF1058_RS11075 are separated by 75 nucleotides HMPREF1058_RS11075 and HMPREF1058_RS11070 are separated by 3 nucleotides HMPREF1058_RS11070 and HMPREF1058_RS11065 are separated by 15 nucleotides HMPREF1058_RS11065 and HMPREF1058_RS11060 overlap by 1 nucleotides
HMPREF1058_RS11080: HMPREF1058_RS11080 - ORF6N domain-containing protein, at 485,810 to 486,370
_RS11080
HMPREF1058_RS11075: HMPREF1058_RS11075 - PH domain-containing protein, at 486,446 to 486,856
_RS11075
HMPREF1058_RS11070: HMPREF1058_RS11070 - PH domain-containing protein, at 486,860 to 487,273
_RS11070
HMPREF1058_RS11065: HMPREF1058_RS11065 - dihydrolipoyl dehydrogenase, at 487,289 to 488,629
_RS11065
HMPREF1058_RS11060: HMPREF1058_RS11060 - D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase, at 488,629 to 490,029
_RS11060
Position (kb) 487
488
489 Strain fitness (log2 ratio) -2
-1
0
1
2 at 486.435 kb on - strand at 486.486 kb on - strand at 486.486 kb on - strand at 486.520 kb on - strand, within HMPREF1058_RS11075 at 486.536 kb on - strand, within HMPREF1058_RS11075 at 486.536 kb on - strand, within HMPREF1058_RS11075 at 486.592 kb on + strand, within HMPREF1058_RS11075 at 486.608 kb on + strand, within HMPREF1058_RS11075 at 486.609 kb on - strand, within HMPREF1058_RS11075 at 486.610 kb on + strand, within HMPREF1058_RS11075 at 486.659 kb on - strand, within HMPREF1058_RS11075 at 486.731 kb on - strand, within HMPREF1058_RS11075 at 486.747 kb on + strand, within HMPREF1058_RS11075 at 486.753 kb on + strand, within HMPREF1058_RS11075 at 486.753 kb on + strand, within HMPREF1058_RS11075 at 486.753 kb on + strand, within HMPREF1058_RS11075 at 486.753 kb on + strand, within HMPREF1058_RS11075 at 486.838 kb on + strand at 486.839 kb on - strand at 486.907 kb on + strand, within HMPREF1058_RS11070 at 486.907 kb on + strand, within HMPREF1058_RS11070 at 486.907 kb on + strand, within HMPREF1058_RS11070 at 486.909 kb on + strand, within HMPREF1058_RS11070 at 486.910 kb on - strand, within HMPREF1058_RS11070 at 486.992 kb on - strand, within HMPREF1058_RS11070 at 487.032 kb on - strand, within HMPREF1058_RS11070 at 487.038 kb on + strand, within HMPREF1058_RS11070 at 487.039 kb on - strand, within HMPREF1058_RS11070 at 487.087 kb on - strand, within HMPREF1058_RS11070 at 487.087 kb on - strand, within HMPREF1058_RS11070 at 487.206 kb on + strand, within HMPREF1058_RS11070 at 487.206 kb on + strand, within HMPREF1058_RS11070 at 487.261 kb on - strand at 487.268 kb on - strand at 487.334 kb on - strand at 487.334 kb on - strand at 487.374 kb on + strand at 487.375 kb on - strand at 487.423 kb on + strand, within HMPREF1058_RS11065 at 487.423 kb on + strand, within HMPREF1058_RS11065 at 487.460 kb on + strand, within HMPREF1058_RS11065 at 487.467 kb on - strand, within HMPREF1058_RS11065 at 487.602 kb on + strand, within HMPREF1058_RS11065 at 487.606 kb on + strand, within HMPREF1058_RS11065 at 487.607 kb on - strand, within HMPREF1058_RS11065 at 487.608 kb on + strand, within HMPREF1058_RS11065 at 487.609 kb on - strand, within HMPREF1058_RS11065 at 487.636 kb on + strand, within HMPREF1058_RS11065 at 487.711 kb on + strand, within HMPREF1058_RS11065 at 487.783 kb on - strand, within HMPREF1058_RS11065 at 487.938 kb on - strand, within HMPREF1058_RS11065 at 488.152 kb on - strand, within HMPREF1058_RS11065 at 488.191 kb on - strand, within HMPREF1058_RS11065 at 488.191 kb on - strand, within HMPREF1058_RS11065 at 488.228 kb on - strand, within HMPREF1058_RS11065 at 488.264 kb on - strand, within HMPREF1058_RS11065 at 488.264 kb on - strand, within HMPREF1058_RS11065 at 488.266 kb on - strand, within HMPREF1058_RS11065 at 488.268 kb on + strand, within HMPREF1058_RS11065 at 488.269 kb on - strand, within HMPREF1058_RS11065 at 488.344 kb on + strand, within HMPREF1058_RS11065 at 488.374 kb on + strand, within HMPREF1058_RS11065 at 488.497 kb on + strand at 488.497 kb on + strand at 488.498 kb on - strand at 488.539 kb on + strand at 488.540 kb on - strand at 488.566 kb on - strand at 488.586 kb on + strand at 488.587 kb on - strand at 488.587 kb on - strand at 488.625 kb on + strand at 488.628 kb on - strand at 488.654 kb on + strand at 488.663 kb on + strand at 488.663 kb on + strand at 488.811 kb on - strand, within HMPREF1058_RS11060 at 488.838 kb on - strand, within HMPREF1058_RS11060 at 488.881 kb on - strand, within HMPREF1058_RS11060 at 488.945 kb on - strand, within HMPREF1058_RS11060 at 489.213 kb on + strand, within HMPREF1058_RS11060 at 489.369 kb on - strand, within HMPREF1058_RS11060 at 489.371 kb on - strand, within HMPREF1058_RS11060 at 489.373 kb on - strand, within HMPREF1058_RS11060 at 489.479 kb on + strand, within HMPREF1058_RS11060 at 489.480 kb on - strand, within HMPREF1058_RS11060 at 489.480 kb on - strand, within HMPREF1058_RS11060 at 489.483 kb on + strand, within HMPREF1058_RS11060 at 489.491 kb on - strand, within HMPREF1058_RS11060 at 489.493 kb on - strand, within HMPREF1058_RS11060 at 489.547 kb on - strand, within HMPREF1058_RS11060
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 486,435 - +0.8 486,486 - +1.2 486,486 - -0.2 486,520 - HMPREF1058_RS11075 0.18 +0.5 486,536 - HMPREF1058_RS11075 0.22 +0.6 486,536 - HMPREF1058_RS11075 0.22 +1.3 486,592 + HMPREF1058_RS11075 0.36 -0.3 486,608 + HMPREF1058_RS11075 0.39 -1.5 486,609 - HMPREF1058_RS11075 0.40 +0.4 486,610 + HMPREF1058_RS11075 0.40 +0.8 486,659 - HMPREF1058_RS11075 0.52 +1.8 486,731 - HMPREF1058_RS11075 0.69 +0.6 486,747 + HMPREF1058_RS11075 0.73 +0.3 486,753 + HMPREF1058_RS11075 0.75 +0.4 486,753 + HMPREF1058_RS11075 0.75 -0.4 486,753 + HMPREF1058_RS11075 0.75 -1.1 486,753 + HMPREF1058_RS11075 0.75 -0.1 486,838 + +0.2 486,839 - +1.1 486,907 + HMPREF1058_RS11070 0.11 -0.3 486,907 + HMPREF1058_RS11070 0.11 +0.1 486,907 + HMPREF1058_RS11070 0.11 -1.9 486,909 + HMPREF1058_RS11070 0.12 +0.2 486,910 - HMPREF1058_RS11070 0.12 +2.5 486,992 - HMPREF1058_RS11070 0.32 +0.1 487,032 - HMPREF1058_RS11070 0.42 +0.5 487,038 + HMPREF1058_RS11070 0.43 -0.3 487,039 - HMPREF1058_RS11070 0.43 +0.1 487,087 - HMPREF1058_RS11070 0.55 +1.7 487,087 - HMPREF1058_RS11070 0.55 +0.3 487,206 + HMPREF1058_RS11070 0.84 +0.0 487,206 + HMPREF1058_RS11070 0.84 -1.0 487,261 - +0.7 487,268 - +0.5 487,334 - +0.9 487,334 - +0.5 487,374 + +0.8 487,375 - +0.2 487,423 + HMPREF1058_RS11065 0.10 +1.8 487,423 + HMPREF1058_RS11065 0.10 +1.6 487,460 + HMPREF1058_RS11065 0.13 +0.6 487,467 - HMPREF1058_RS11065 0.13 +1.2 487,602 + HMPREF1058_RS11065 0.23 +1.3 487,606 + HMPREF1058_RS11065 0.24 +1.1 487,607 - HMPREF1058_RS11065 0.24 -0.9 487,608 + HMPREF1058_RS11065 0.24 +0.4 487,609 - HMPREF1058_RS11065 0.24 +0.8 487,636 + HMPREF1058_RS11065 0.26 +2.3 487,711 + HMPREF1058_RS11065 0.31 +1.3 487,783 - HMPREF1058_RS11065 0.37 +0.2 487,938 - HMPREF1058_RS11065 0.48 +0.2 488,152 - HMPREF1058_RS11065 0.64 +1.0 488,191 - HMPREF1058_RS11065 0.67 -0.3 488,191 - HMPREF1058_RS11065 0.67 +1.0 488,228 - HMPREF1058_RS11065 0.70 +1.0 488,264 - HMPREF1058_RS11065 0.73 +0.2 488,264 - HMPREF1058_RS11065 0.73 +0.2 488,266 - HMPREF1058_RS11065 0.73 +0.7 488,268 + HMPREF1058_RS11065 0.73 +1.0 488,269 - HMPREF1058_RS11065 0.73 +0.4 488,344 + HMPREF1058_RS11065 0.79 +1.6 488,374 + HMPREF1058_RS11065 0.81 +1.9 488,497 + +2.5 488,497 + -0.1 488,498 - +1.1 488,539 + +0.2 488,540 - +0.5 488,566 - +0.4 488,586 + +0.8 488,587 - -0.3 488,587 - +2.1 488,625 + -0.1 488,628 - -0.9 488,654 + -0.6 488,663 + +0.1 488,663 + +0.2 488,811 - HMPREF1058_RS11060 0.13 +0.1 488,838 - HMPREF1058_RS11060 0.15 -0.2 488,881 - HMPREF1058_RS11060 0.18 +0.0 488,945 - HMPREF1058_RS11060 0.23 +0.4 489,213 + HMPREF1058_RS11060 0.42 +0.0 489,369 - HMPREF1058_RS11060 0.53 -0.2 489,371 - HMPREF1058_RS11060 0.53 -0.7 489,373 - HMPREF1058_RS11060 0.53 -1.2 489,479 + HMPREF1058_RS11060 0.61 +0.4 489,480 - HMPREF1058_RS11060 0.61 -0.4 489,480 - HMPREF1058_RS11060 0.61 -0.4 489,483 + HMPREF1058_RS11060 0.61 -0.5 489,491 - HMPREF1058_RS11060 0.62 +0.6 489,493 - HMPREF1058_RS11060 0.62 +1.8 489,547 - HMPREF1058_RS11060 0.66 -0.1
Or see this region's nucleotide sequence