Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11010 and HMPREF1058_RS11005 are separated by 4 nucleotides HMPREF1058_RS11005 and HMPREF1058_RS11000 overlap by 25 nucleotides HMPREF1058_RS11000 and HMPREF1058_RS10995 are separated by 18 nucleotides
HMPREF1058_RS11010: HMPREF1058_RS11010 - tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD, at 504,025 to 504,708
_RS11010
HMPREF1058_RS11005: HMPREF1058_RS11005 - DedA family protein, at 504,713 to 505,180
_RS11005
HMPREF1058_RS11000: HMPREF1058_RS11000 - hypothetical protein, at 505,156 to 506,091
_RS11000
HMPREF1058_RS10995: HMPREF1058_RS10995 - phosphoribosylamine--glycine ligase, at 506,110 to 507,378
_RS10995
Position (kb) 504
505
506 Strain fitness (log2 ratio) -2
-1
0
1
2 at 503.770 kb on + strand at 503.772 kb on + strand at 503.773 kb on - strand at 503.775 kb on + strand at 503.790 kb on + strand at 503.791 kb on - strand at 503.791 kb on - strand at 503.836 kb on + strand at 503.836 kb on + strand at 503.838 kb on + strand at 503.838 kb on + strand at 503.838 kb on + strand at 504.026 kb on + strand at 504.049 kb on + strand at 504.050 kb on - strand at 504.140 kb on + strand, within HMPREF1058_RS11010 at 504.141 kb on - strand, within HMPREF1058_RS11010 at 504.177 kb on - strand, within HMPREF1058_RS11010 at 504.177 kb on - strand, within HMPREF1058_RS11010 at 504.242 kb on + strand, within HMPREF1058_RS11010 at 504.254 kb on + strand, within HMPREF1058_RS11010 at 504.254 kb on + strand, within HMPREF1058_RS11010 at 504.325 kb on + strand, within HMPREF1058_RS11010 at 504.326 kb on - strand, within HMPREF1058_RS11010 at 504.326 kb on - strand, within HMPREF1058_RS11010 at 504.475 kb on - strand, within HMPREF1058_RS11010 at 504.477 kb on - strand, within HMPREF1058_RS11010 at 504.541 kb on + strand, within HMPREF1058_RS11010 at 504.668 kb on + strand at 504.668 kb on + strand at 504.669 kb on - strand at 504.669 kb on - strand at 504.669 kb on - strand at 504.675 kb on + strand at 504.676 kb on - strand at 504.676 kb on - strand at 504.677 kb on + strand at 504.678 kb on - strand at 504.678 kb on - strand at 504.806 kb on + strand, within HMPREF1058_RS11005 at 504.808 kb on + strand, within HMPREF1058_RS11005 at 504.808 kb on + strand, within HMPREF1058_RS11005 at 504.808 kb on + strand, within HMPREF1058_RS11005 at 504.808 kb on + strand, within HMPREF1058_RS11005 at 504.809 kb on - strand, within HMPREF1058_RS11005 at 504.830 kb on + strand, within HMPREF1058_RS11005 at 504.839 kb on + strand, within HMPREF1058_RS11005 at 504.945 kb on + strand, within HMPREF1058_RS11005 at 505.034 kb on - strand, within HMPREF1058_RS11005 at 505.117 kb on + strand, within HMPREF1058_RS11005 at 505.188 kb on - strand at 505.191 kb on + strand at 505.201 kb on + strand at 505.207 kb on + strand at 505.288 kb on + strand, within HMPREF1058_RS11000 at 505.288 kb on + strand, within HMPREF1058_RS11000 at 505.289 kb on - strand, within HMPREF1058_RS11000 at 505.387 kb on + strand, within HMPREF1058_RS11000 at 505.399 kb on + strand, within HMPREF1058_RS11000 at 505.408 kb on + strand, within HMPREF1058_RS11000 at 505.596 kb on - strand, within HMPREF1058_RS11000 at 505.689 kb on - strand, within HMPREF1058_RS11000 at 505.746 kb on + strand, within HMPREF1058_RS11000 at 505.772 kb on + strand, within HMPREF1058_RS11000 at 505.773 kb on - strand, within HMPREF1058_RS11000 at 505.875 kb on - strand, within HMPREF1058_RS11000 at 505.894 kb on - strand, within HMPREF1058_RS11000 at 505.894 kb on - strand, within HMPREF1058_RS11000 at 506.020 kb on + strand at 506.020 kb on + strand at 506.020 kb on + strand at 506.020 kb on + strand at 506.020 kb on + strand at 506.020 kb on + strand at 506.021 kb on - strand at 506.021 kb on - strand at 506.022 kb on + strand at 506.022 kb on + strand at 506.023 kb on - strand at 506.065 kb on + strand at 506.066 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 503,770 + -0.1 503,772 + +0.4 503,773 - +0.2 503,775 + -0.4 503,790 + -0.3 503,791 - +0.8 503,791 - +0.6 503,836 + -0.7 503,836 + -1.4 503,838 + -0.5 503,838 + +1.8 503,838 + +0.2 504,026 + -0.2 504,049 + -1.1 504,050 - +0.9 504,140 + HMPREF1058_RS11010 0.17 +0.1 504,141 - HMPREF1058_RS11010 0.17 -0.9 504,177 - HMPREF1058_RS11010 0.22 -0.4 504,177 - HMPREF1058_RS11010 0.22 -0.4 504,242 + HMPREF1058_RS11010 0.32 +0.2 504,254 + HMPREF1058_RS11010 0.33 -0.0 504,254 + HMPREF1058_RS11010 0.33 +1.5 504,325 + HMPREF1058_RS11010 0.44 +0.1 504,326 - HMPREF1058_RS11010 0.44 -0.1 504,326 - HMPREF1058_RS11010 0.44 +0.1 504,475 - HMPREF1058_RS11010 0.66 +0.1 504,477 - HMPREF1058_RS11010 0.66 +0.5 504,541 + HMPREF1058_RS11010 0.75 -0.2 504,668 + -0.1 504,668 + +0.5 504,669 - +0.0 504,669 - +0.3 504,669 - +0.5 504,675 + -1.5 504,676 - -0.1 504,676 - +1.1 504,677 + +1.0 504,678 - -0.2 504,678 - -0.1 504,806 + HMPREF1058_RS11005 0.20 +2.4 504,808 + HMPREF1058_RS11005 0.20 +0.9 504,808 + HMPREF1058_RS11005 0.20 +0.7 504,808 + HMPREF1058_RS11005 0.20 +0.8 504,808 + HMPREF1058_RS11005 0.20 +0.7 504,809 - HMPREF1058_RS11005 0.21 +0.8 504,830 + HMPREF1058_RS11005 0.25 -0.6 504,839 + HMPREF1058_RS11005 0.27 +0.9 504,945 + HMPREF1058_RS11005 0.50 +0.2 505,034 - HMPREF1058_RS11005 0.69 +0.0 505,117 + HMPREF1058_RS11005 0.86 +1.4 505,188 - -0.9 505,191 + +0.9 505,201 + +0.5 505,207 + -0.2 505,288 + HMPREF1058_RS11000 0.14 +0.4 505,288 + HMPREF1058_RS11000 0.14 +1.7 505,289 - HMPREF1058_RS11000 0.14 -1.4 505,387 + HMPREF1058_RS11000 0.25 +1.9 505,399 + HMPREF1058_RS11000 0.26 -0.9 505,408 + HMPREF1058_RS11000 0.27 -1.3 505,596 - HMPREF1058_RS11000 0.47 -1.8 505,689 - HMPREF1058_RS11000 0.57 -0.3 505,746 + HMPREF1058_RS11000 0.63 +0.5 505,772 + HMPREF1058_RS11000 0.66 -0.6 505,773 - HMPREF1058_RS11000 0.66 +1.4 505,875 - HMPREF1058_RS11000 0.77 +0.9 505,894 - HMPREF1058_RS11000 0.79 +1.4 505,894 - HMPREF1058_RS11000 0.79 -1.6 506,020 + +0.5 506,020 + -0.3 506,020 + +1.8 506,020 + -2.0 506,020 + -0.4 506,020 + -0.3 506,021 - +0.2 506,021 - +0.5 506,022 + +0.2 506,022 + -0.7 506,023 - -1.3 506,065 + -0.0 506,066 - +1.1
Or see this region's nucleotide sequence