Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10950 and HMPREF1058_RS10945 are separated by 95 nucleotides HMPREF1058_RS10945 and HMPREF1058_RS10940 are separated by 150 nucleotides
HMPREF1058_RS10950: HMPREF1058_RS10950 - DUF2807 domain-containing protein, at 518,507 to 519,358
_RS10950
HMPREF1058_RS10945: HMPREF1058_RS10945 - tRNA dihydrouridine synthase DusB, at 519,454 to 520,443
_RS10945
HMPREF1058_RS10940: HMPREF1058_RS10940 - U32 family peptidase, at 520,594 to 521,856
_RS10940
Position (kb) 519
520
521 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 518.504 kb on - strand at 518.518 kb on - strand at 518.546 kb on - strand at 518.580 kb on + strand at 518.590 kb on + strand at 518.591 kb on - strand at 518.597 kb on + strand, within HMPREF1058_RS10950 at 518.598 kb on - strand, within HMPREF1058_RS10950 at 518.598 kb on - strand, within HMPREF1058_RS10950 at 518.624 kb on - strand, within HMPREF1058_RS10950 at 518.636 kb on - strand, within HMPREF1058_RS10950 at 518.661 kb on + strand, within HMPREF1058_RS10950 at 518.700 kb on + strand, within HMPREF1058_RS10950 at 518.701 kb on - strand, within HMPREF1058_RS10950 at 518.702 kb on + strand, within HMPREF1058_RS10950 at 518.703 kb on - strand, within HMPREF1058_RS10950 at 518.726 kb on + strand, within HMPREF1058_RS10950 at 518.726 kb on + strand, within HMPREF1058_RS10950 at 518.726 kb on + strand, within HMPREF1058_RS10950 at 518.728 kb on + strand, within HMPREF1058_RS10950 at 518.755 kb on - strand, within HMPREF1058_RS10950 at 518.796 kb on + strand, within HMPREF1058_RS10950 at 518.809 kb on + strand, within HMPREF1058_RS10950 at 518.809 kb on + strand, within HMPREF1058_RS10950 at 518.875 kb on + strand, within HMPREF1058_RS10950 at 518.876 kb on - strand, within HMPREF1058_RS10950 at 518.880 kb on + strand, within HMPREF1058_RS10950 at 518.911 kb on + strand, within HMPREF1058_RS10950 at 518.941 kb on - strand, within HMPREF1058_RS10950 at 518.987 kb on - strand, within HMPREF1058_RS10950 at 519.060 kb on + strand, within HMPREF1058_RS10950 at 519.091 kb on - strand, within HMPREF1058_RS10950 at 519.134 kb on - strand, within HMPREF1058_RS10950 at 519.191 kb on - strand, within HMPREF1058_RS10950 at 519.191 kb on - strand, within HMPREF1058_RS10950 at 519.208 kb on - strand, within HMPREF1058_RS10950 at 519.208 kb on - strand, within HMPREF1058_RS10950 at 519.246 kb on - strand, within HMPREF1058_RS10950 at 519.246 kb on - strand, within HMPREF1058_RS10950 at 519.246 kb on - strand, within HMPREF1058_RS10950 at 519.296 kb on + strand at 519.296 kb on + strand at 519.375 kb on - strand at 519.375 kb on - strand at 519.382 kb on - strand at 519.384 kb on + strand at 519.384 kb on + strand at 519.432 kb on - strand at 519.432 kb on - strand at 519.437 kb on - strand at 519.437 kb on - strand at 519.439 kb on + strand at 519.439 kb on + strand at 519.439 kb on + strand at 519.450 kb on - strand at 519.483 kb on + strand at 519.485 kb on + strand at 519.485 kb on + strand at 519.485 kb on + strand at 519.537 kb on + strand at 519.567 kb on + strand, within HMPREF1058_RS10945 at 519.661 kb on + strand, within HMPREF1058_RS10945 at 519.713 kb on - strand, within HMPREF1058_RS10945 at 519.713 kb on - strand, within HMPREF1058_RS10945 at 519.713 kb on - strand, within HMPREF1058_RS10945 at 519.715 kb on - strand, within HMPREF1058_RS10945 at 519.716 kb on + strand, within HMPREF1058_RS10945 at 519.716 kb on + strand, within HMPREF1058_RS10945 at 519.717 kb on - strand, within HMPREF1058_RS10945 at 519.717 kb on - strand, within HMPREF1058_RS10945 at 519.771 kb on + strand, within HMPREF1058_RS10945 at 519.781 kb on + strand, within HMPREF1058_RS10945 at 519.823 kb on - strand, within HMPREF1058_RS10945 at 519.826 kb on + strand, within HMPREF1058_RS10945 at 519.826 kb on + strand, within HMPREF1058_RS10945 at 519.827 kb on - strand, within HMPREF1058_RS10945 at 519.827 kb on - strand, within HMPREF1058_RS10945 at 519.827 kb on - strand, within HMPREF1058_RS10945 at 519.846 kb on + strand, within HMPREF1058_RS10945 at 519.850 kb on + strand, within HMPREF1058_RS10945 at 519.850 kb on + strand, within HMPREF1058_RS10945 at 519.850 kb on + strand, within HMPREF1058_RS10945 at 519.850 kb on + strand, within HMPREF1058_RS10945 at 519.853 kb on - strand, within HMPREF1058_RS10945 at 519.884 kb on - strand, within HMPREF1058_RS10945 at 519.884 kb on - strand at 519.912 kb on - strand, within HMPREF1058_RS10945 at 519.968 kb on - strand, within HMPREF1058_RS10945 at 519.986 kb on - strand, within HMPREF1058_RS10945 at 519.990 kb on + strand, within HMPREF1058_RS10945 at 519.990 kb on + strand, within HMPREF1058_RS10945 at 520.101 kb on + strand, within HMPREF1058_RS10945 at 520.202 kb on - strand, within HMPREF1058_RS10945 at 520.329 kb on - strand, within HMPREF1058_RS10945 at 520.331 kb on - strand, within HMPREF1058_RS10945 at 520.331 kb on - strand, within HMPREF1058_RS10945 at 520.331 kb on - strand, within HMPREF1058_RS10945 at 520.381 kb on + strand at 520.426 kb on + strand at 520.428 kb on + strand at 520.429 kb on - strand at 520.449 kb on + strand at 520.449 kb on + strand at 520.450 kb on - strand at 520.450 kb on - strand at 520.494 kb on + strand at 520.575 kb on + strand at 520.576 kb on - strand at 520.577 kb on + strand at 520.577 kb on + strand at 520.578 kb on - strand at 520.578 kb on - strand at 520.687 kb on + strand at 520.795 kb on + strand, within HMPREF1058_RS10940 at 520.809 kb on + strand, within HMPREF1058_RS10940 at 520.915 kb on + strand, within HMPREF1058_RS10940 at 520.915 kb on + strand, within HMPREF1058_RS10940 at 520.916 kb on - strand, within HMPREF1058_RS10940 at 520.941 kb on - strand, within HMPREF1058_RS10940 at 520.941 kb on - strand, within HMPREF1058_RS10940 at 520.958 kb on + strand, within HMPREF1058_RS10940 at 520.962 kb on + strand, within HMPREF1058_RS10940 at 520.963 kb on - strand, within HMPREF1058_RS10940 at 521.009 kb on + strand, within HMPREF1058_RS10940 at 521.009 kb on + strand, within HMPREF1058_RS10940 at 521.056 kb on + strand, within HMPREF1058_RS10940 at 521.057 kb on - strand, within HMPREF1058_RS10940 at 521.057 kb on - strand, within HMPREF1058_RS10940 at 521.061 kb on + strand, within HMPREF1058_RS10940 at 521.061 kb on + strand, within HMPREF1058_RS10940 at 521.208 kb on + strand, within HMPREF1058_RS10940 at 521.208 kb on + strand, within HMPREF1058_RS10940 at 521.216 kb on + strand, within HMPREF1058_RS10940 at 521.216 kb on + strand, within HMPREF1058_RS10940 at 521.216 kb on + strand, within HMPREF1058_RS10940 at 521.230 kb on + strand, within HMPREF1058_RS10940 at 521.277 kb on + strand, within HMPREF1058_RS10940 at 521.281 kb on + strand, within HMPREF1058_RS10940 at 521.282 kb on - strand, within HMPREF1058_RS10940 at 521.282 kb on - strand, within HMPREF1058_RS10940 at 521.282 kb on - strand, within HMPREF1058_RS10940 at 521.282 kb on - strand, within HMPREF1058_RS10940 at 521.282 kb on - strand, within HMPREF1058_RS10940 at 521.310 kb on + strand, within HMPREF1058_RS10940 at 521.310 kb on + strand, within HMPREF1058_RS10940 at 521.334 kb on - strand, within HMPREF1058_RS10940 at 521.390 kb on + strand, within HMPREF1058_RS10940 at 521.390 kb on + strand, within HMPREF1058_RS10940 at 521.391 kb on - strand, within HMPREF1058_RS10940 at 521.410 kb on + strand, within HMPREF1058_RS10940 at 521.431 kb on + strand, within HMPREF1058_RS10940
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 518,504 - +0.8 518,518 - -0.3 518,546 - +0.9 518,580 + +0.0 518,590 + -1.1 518,591 - +0.1 518,597 + HMPREF1058_RS10950 0.11 +0.1 518,598 - HMPREF1058_RS10950 0.11 -0.5 518,598 - HMPREF1058_RS10950 0.11 +0.3 518,624 - HMPREF1058_RS10950 0.14 -0.2 518,636 - HMPREF1058_RS10950 0.15 -2.8 518,661 + HMPREF1058_RS10950 0.18 -0.4 518,700 + HMPREF1058_RS10950 0.23 -1.7 518,701 - HMPREF1058_RS10950 0.23 -0.3 518,702 + HMPREF1058_RS10950 0.23 +0.6 518,703 - HMPREF1058_RS10950 0.23 -0.9 518,726 + HMPREF1058_RS10950 0.26 -0.3 518,726 + HMPREF1058_RS10950 0.26 -2.8 518,726 + HMPREF1058_RS10950 0.26 -0.4 518,728 + HMPREF1058_RS10950 0.26 +0.3 518,755 - HMPREF1058_RS10950 0.29 -0.5 518,796 + HMPREF1058_RS10950 0.34 +0.0 518,809 + HMPREF1058_RS10950 0.35 -0.8 518,809 + HMPREF1058_RS10950 0.35 +0.8 518,875 + HMPREF1058_RS10950 0.43 -0.5 518,876 - HMPREF1058_RS10950 0.43 -0.4 518,880 + HMPREF1058_RS10950 0.44 -0.9 518,911 + HMPREF1058_RS10950 0.47 -0.2 518,941 - HMPREF1058_RS10950 0.51 -1.0 518,987 - HMPREF1058_RS10950 0.56 -2.0 519,060 + HMPREF1058_RS10950 0.65 +0.1 519,091 - HMPREF1058_RS10950 0.69 +0.1 519,134 - HMPREF1058_RS10950 0.74 -0.4 519,191 - HMPREF1058_RS10950 0.80 -1.5 519,191 - HMPREF1058_RS10950 0.80 +0.3 519,208 - HMPREF1058_RS10950 0.82 +0.1 519,208 - HMPREF1058_RS10950 0.82 -1.6 519,246 - HMPREF1058_RS10950 0.87 +0.9 519,246 - HMPREF1058_RS10950 0.87 -0.0 519,246 - HMPREF1058_RS10950 0.87 -0.6 519,296 + +0.2 519,296 + +0.3 519,375 - -0.2 519,375 - +2.3 519,382 - -0.2 519,384 + -0.6 519,384 + +0.4 519,432 - +0.1 519,432 - -0.8 519,437 - +0.9 519,437 - +0.3 519,439 + -0.3 519,439 + -1.0 519,439 + -0.8 519,450 - +0.2 519,483 + -0.7 519,485 + +0.6 519,485 + +0.9 519,485 + -0.1 519,537 + +0.5 519,567 + HMPREF1058_RS10945 0.11 +1.9 519,661 + HMPREF1058_RS10945 0.21 +1.2 519,713 - HMPREF1058_RS10945 0.26 +1.6 519,713 - HMPREF1058_RS10945 0.26 +1.0 519,713 - HMPREF1058_RS10945 0.26 +1.1 519,715 - HMPREF1058_RS10945 0.26 +2.2 519,716 + HMPREF1058_RS10945 0.26 +1.9 519,716 + HMPREF1058_RS10945 0.26 +1.1 519,717 - HMPREF1058_RS10945 0.27 +2.5 519,717 - HMPREF1058_RS10945 0.27 +1.5 519,771 + HMPREF1058_RS10945 0.32 +2.7 519,781 + HMPREF1058_RS10945 0.33 +1.3 519,823 - HMPREF1058_RS10945 0.37 +1.9 519,826 + HMPREF1058_RS10945 0.38 +2.8 519,826 + HMPREF1058_RS10945 0.38 +2.2 519,827 - HMPREF1058_RS10945 0.38 +2.4 519,827 - HMPREF1058_RS10945 0.38 +1.1 519,827 - HMPREF1058_RS10945 0.38 +1.5 519,846 + HMPREF1058_RS10945 0.40 +2.3 519,850 + HMPREF1058_RS10945 0.40 +1.8 519,850 + HMPREF1058_RS10945 0.40 +1.4 519,850 + HMPREF1058_RS10945 0.40 +2.4 519,850 + HMPREF1058_RS10945 0.40 +1.5 519,853 - HMPREF1058_RS10945 0.40 +1.6 519,884 - HMPREF1058_RS10945 0.43 +1.7 519,884 - +2.1 519,912 - HMPREF1058_RS10945 0.46 +1.9 519,968 - HMPREF1058_RS10945 0.52 +1.4 519,986 - HMPREF1058_RS10945 0.54 +1.7 519,990 + HMPREF1058_RS10945 0.54 +1.9 519,990 + HMPREF1058_RS10945 0.54 +2.1 520,101 + HMPREF1058_RS10945 0.65 +1.9 520,202 - HMPREF1058_RS10945 0.76 +1.7 520,329 - HMPREF1058_RS10945 0.88 +2.3 520,331 - HMPREF1058_RS10945 0.89 +0.6 520,331 - HMPREF1058_RS10945 0.89 +0.7 520,331 - HMPREF1058_RS10945 0.89 +1.8 520,381 + +0.9 520,426 + +1.1 520,428 + +1.0 520,429 - +2.2 520,449 + +1.9 520,449 + +1.0 520,450 - -0.7 520,450 - -0.2 520,494 + +2.1 520,575 + +0.4 520,576 - -1.1 520,577 + -0.1 520,577 + +0.4 520,578 - -1.1 520,578 - -0.9 520,687 + -1.1 520,795 + HMPREF1058_RS10940 0.16 -1.5 520,809 + HMPREF1058_RS10940 0.17 -1.5 520,915 + HMPREF1058_RS10940 0.25 +0.7 520,915 + HMPREF1058_RS10940 0.25 -1.1 520,916 - HMPREF1058_RS10940 0.25 -1.5 520,941 - HMPREF1058_RS10940 0.27 -0.4 520,941 - HMPREF1058_RS10940 0.27 -0.6 520,958 + HMPREF1058_RS10940 0.29 -1.8 520,962 + HMPREF1058_RS10940 0.29 -1.6 520,963 - HMPREF1058_RS10940 0.29 -1.4 521,009 + HMPREF1058_RS10940 0.33 -0.4 521,009 + HMPREF1058_RS10940 0.33 -1.0 521,056 + HMPREF1058_RS10940 0.37 +1.9 521,057 - HMPREF1058_RS10940 0.37 -0.9 521,057 - HMPREF1058_RS10940 0.37 -1.9 521,061 + HMPREF1058_RS10940 0.37 -2.2 521,061 + HMPREF1058_RS10940 0.37 -2.2 521,208 + HMPREF1058_RS10940 0.49 -1.3 521,208 + HMPREF1058_RS10940 0.49 -0.0 521,216 + HMPREF1058_RS10940 0.49 +0.1 521,216 + HMPREF1058_RS10940 0.49 +0.1 521,216 + HMPREF1058_RS10940 0.49 +2.3 521,230 + HMPREF1058_RS10940 0.50 -2.1 521,277 + HMPREF1058_RS10940 0.54 +0.1 521,281 + HMPREF1058_RS10940 0.54 -0.8 521,282 - HMPREF1058_RS10940 0.54 -0.6 521,282 - HMPREF1058_RS10940 0.54 -1.0 521,282 - HMPREF1058_RS10940 0.54 -0.6 521,282 - HMPREF1058_RS10940 0.54 -0.3 521,282 - HMPREF1058_RS10940 0.54 -0.1 521,310 + HMPREF1058_RS10940 0.57 -1.8 521,310 + HMPREF1058_RS10940 0.57 -0.9 521,334 - HMPREF1058_RS10940 0.59 -3.1 521,390 + HMPREF1058_RS10940 0.63 -1.1 521,390 + HMPREF1058_RS10940 0.63 -1.6 521,391 - HMPREF1058_RS10940 0.63 +0.5 521,410 + HMPREF1058_RS10940 0.65 -0.6 521,431 + HMPREF1058_RS10940 0.66 -1.7
Or see this region's nucleotide sequence