Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10835 and HMPREF1058_RS10830 are separated by 2 nucleotides HMPREF1058_RS10830 and HMPREF1058_RS10825 are separated by 0 nucleotides HMPREF1058_RS10825 and HMPREF1058_RS10820 are separated by 104 nucleotides
HMPREF1058_RS10835: HMPREF1058_RS10835 - UDP-galactopyranose mutase, at 551,106 to 552,212
_RS10835
HMPREF1058_RS10830: HMPREF1058_RS10830 - lysophospholipid acyltransferase family protein, at 552,215 to 553,138
_RS10830
HMPREF1058_RS10825: HMPREF1058_RS10825 - glycosyltransferase family 9 protein, at 553,139 to 554,170
_RS10825
HMPREF1058_RS10820: HMPREF1058_RS10820 - 4-phosphoerythronate dehydrogenase PdxB, at 554,275 to 555,300
_RS10820
Position (kb) 553
554
555 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 552.186 kb on + strand at 552.187 kb on - strand at 552.196 kb on + strand at 553.167 kb on - strand at 553.214 kb on - strand at 553.263 kb on - strand, within HMPREF1058_RS10825 at 553.269 kb on - strand, within HMPREF1058_RS10825 at 553.679 kb on - strand, within HMPREF1058_RS10825 at 553.734 kb on - strand, within HMPREF1058_RS10825 at 553.734 kb on - strand, within HMPREF1058_RS10825 at 553.734 kb on - strand, within HMPREF1058_RS10825 at 553.734 kb on - strand, within HMPREF1058_RS10825 at 553.951 kb on - strand, within HMPREF1058_RS10825 at 553.951 kb on - strand, within HMPREF1058_RS10825 at 553.951 kb on - strand, within HMPREF1058_RS10825 at 553.951 kb on - strand, within HMPREF1058_RS10825 at 554.012 kb on - strand, within HMPREF1058_RS10825 at 554.051 kb on - strand, within HMPREF1058_RS10825 at 554.055 kb on - strand, within HMPREF1058_RS10825 at 554.154 kb on - strand at 554.171 kb on - strand at 554.171 kb on - strand at 554.226 kb on - strand at 554.245 kb on + strand at 554.246 kb on - strand at 554.288 kb on + strand at 554.308 kb on - strand at 554.308 kb on - strand at 554.309 kb on + strand at 554.309 kb on + strand at 554.309 kb on + strand at 554.309 kb on + strand at 554.348 kb on - strand at 554.490 kb on + strand, within HMPREF1058_RS10820 at 554.490 kb on + strand, within HMPREF1058_RS10820 at 554.490 kb on + strand, within HMPREF1058_RS10820 at 554.503 kb on + strand, within HMPREF1058_RS10820 at 554.570 kb on - strand, within HMPREF1058_RS10820 at 554.586 kb on - strand, within HMPREF1058_RS10820 at 554.589 kb on - strand, within HMPREF1058_RS10820 at 554.782 kb on - strand, within HMPREF1058_RS10820 at 554.783 kb on + strand, within HMPREF1058_RS10820 at 554.784 kb on - strand, within HMPREF1058_RS10820 at 554.784 kb on - strand, within HMPREF1058_RS10820 at 554.784 kb on - strand, within HMPREF1058_RS10820 at 554.881 kb on - strand, within HMPREF1058_RS10820 at 554.906 kb on + strand, within HMPREF1058_RS10820 at 554.907 kb on - strand, within HMPREF1058_RS10820 at 554.907 kb on - strand, within HMPREF1058_RS10820 at 554.910 kb on - strand, within HMPREF1058_RS10820 at 554.970 kb on + strand, within HMPREF1058_RS10820 at 554.970 kb on + strand, within HMPREF1058_RS10820 at 555.036 kb on + strand, within HMPREF1058_RS10820 at 555.037 kb on - strand, within HMPREF1058_RS10820 at 555.037 kb on - strand, within HMPREF1058_RS10820 at 555.038 kb on + strand, within HMPREF1058_RS10820 at 555.047 kb on - strand, within HMPREF1058_RS10820 at 555.100 kb on - strand, within HMPREF1058_RS10820 at 555.112 kb on - strand, within HMPREF1058_RS10820 at 555.131 kb on + strand, within HMPREF1058_RS10820 at 555.152 kb on - strand, within HMPREF1058_RS10820 at 555.153 kb on + strand, within HMPREF1058_RS10820 at 555.154 kb on - strand, within HMPREF1058_RS10820 at 555.161 kb on - strand, within HMPREF1058_RS10820
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 552,186 + -0.9 552,187 - -2.3 552,196 + -0.9 553,167 - +1.8 553,214 - -0.4 553,263 - HMPREF1058_RS10825 0.12 +1.2 553,269 - HMPREF1058_RS10825 0.13 +1.5 553,679 - HMPREF1058_RS10825 0.52 +0.5 553,734 - HMPREF1058_RS10825 0.58 +1.2 553,734 - HMPREF1058_RS10825 0.58 +2.1 553,734 - HMPREF1058_RS10825 0.58 +1.3 553,734 - HMPREF1058_RS10825 0.58 +0.6 553,951 - HMPREF1058_RS10825 0.79 +0.5 553,951 - HMPREF1058_RS10825 0.79 +1.0 553,951 - HMPREF1058_RS10825 0.79 +0.9 553,951 - HMPREF1058_RS10825 0.79 +0.5 554,012 - HMPREF1058_RS10825 0.85 +0.1 554,051 - HMPREF1058_RS10825 0.88 -0.2 554,055 - HMPREF1058_RS10825 0.89 -0.1 554,154 - -0.4 554,171 - +0.4 554,171 - +1.0 554,226 - -0.4 554,245 + -0.6 554,246 - -2.4 554,288 + -3.1 554,308 - -3.3 554,308 - -3.8 554,309 + -3.0 554,309 + -3.6 554,309 + -2.9 554,309 + -3.9 554,348 - -1.0 554,490 + HMPREF1058_RS10820 0.21 -5.3 554,490 + HMPREF1058_RS10820 0.21 -2.0 554,490 + HMPREF1058_RS10820 0.21 -2.4 554,503 + HMPREF1058_RS10820 0.22 -6.7 554,570 - HMPREF1058_RS10820 0.29 -4.3 554,586 - HMPREF1058_RS10820 0.30 -4.3 554,589 - HMPREF1058_RS10820 0.31 -2.3 554,782 - HMPREF1058_RS10820 0.49 -2.4 554,783 + HMPREF1058_RS10820 0.50 -2.4 554,784 - HMPREF1058_RS10820 0.50 -4.5 554,784 - HMPREF1058_RS10820 0.50 -3.7 554,784 - HMPREF1058_RS10820 0.50 -0.7 554,881 - HMPREF1058_RS10820 0.59 -3.6 554,906 + HMPREF1058_RS10820 0.62 -2.6 554,907 - HMPREF1058_RS10820 0.62 +0.4 554,907 - HMPREF1058_RS10820 0.62 -0.9 554,910 - HMPREF1058_RS10820 0.62 -5.4 554,970 + HMPREF1058_RS10820 0.68 -5.0 554,970 + HMPREF1058_RS10820 0.68 -3.7 555,036 + HMPREF1058_RS10820 0.74 -2.9 555,037 - HMPREF1058_RS10820 0.74 -2.0 555,037 - HMPREF1058_RS10820 0.74 -3.4 555,038 + HMPREF1058_RS10820 0.74 -4.3 555,047 - HMPREF1058_RS10820 0.75 -4.7 555,100 - HMPREF1058_RS10820 0.80 -3.4 555,112 - HMPREF1058_RS10820 0.82 -4.3 555,131 + HMPREF1058_RS10820 0.83 -3.3 555,152 - HMPREF1058_RS10820 0.85 -4.1 555,153 + HMPREF1058_RS10820 0.86 -2.4 555,154 - HMPREF1058_RS10820 0.86 -4.5 555,161 - HMPREF1058_RS10820 0.86 -1.9
Or see this region's nucleotide sequence