Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS0119660 and HMPREF1058_RS10295 are separated by 180 nucleotides HMPREF1058_RS10295 and HMPREF1058_RS10290 overlap by 4 nucleotides HMPREF1058_RS10290 and HMPREF1058_RS10285 overlap by 4 nucleotides HMPREF1058_RS10285 and HMPREF1058_RS10275 are separated by 309 nucleotides
HMPREF1058_RS0119660: HMPREF1058_RS0119660 - DNA cytosine methyltransferase, at 693,868 to 694,671
_RS0119660
HMPREF1058_RS10295: HMPREF1058_RS10295 - hypothetical protein, at 694,852 to 695,319
_RS10295
HMPREF1058_RS10290: HMPREF1058_RS10290 - hypothetical protein, at 695,316 to 695,621
_RS10290
HMPREF1058_RS10285: HMPREF1058_RS10285 - hypothetical protein, at 695,618 to 695,902
_RS10285
HMPREF1058_RS10275: HMPREF1058_RS10275 - RNA-splicing ligase RtcB, at 696,212 to 697,399
_RS10275
Position (kb) 695
696 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 694.330 kb on + strand, within HMPREF1058_RS0119660 at 694.379 kb on + strand, within HMPREF1058_RS0119660 at 694.380 kb on - strand, within HMPREF1058_RS0119660 at 694.380 kb on - strand, within HMPREF1058_RS0119660 at 694.380 kb on - strand, within HMPREF1058_RS0119660 at 694.464 kb on + strand, within HMPREF1058_RS0119660 at 694.537 kb on - strand, within HMPREF1058_RS0119660 at 694.537 kb on - strand, within HMPREF1058_RS0119660 at 694.540 kb on - strand, within HMPREF1058_RS0119660 at 694.588 kb on + strand, within HMPREF1058_RS0119660 at 694.588 kb on + strand, within HMPREF1058_RS0119660 at 694.589 kb on - strand, within HMPREF1058_RS0119660 at 694.600 kb on - strand at 694.600 kb on - strand at 694.642 kb on - strand at 694.646 kb on - strand at 694.668 kb on - strand at 694.682 kb on + strand at 694.683 kb on - strand at 694.725 kb on - strand at 694.725 kb on - strand at 694.745 kb on + strand at 694.847 kb on - strand at 694.848 kb on + strand at 694.849 kb on - strand at 694.849 kb on - strand at 694.892 kb on + strand at 694.902 kb on + strand, within HMPREF1058_RS10295 at 694.977 kb on + strand, within HMPREF1058_RS10295 at 695.166 kb on - strand, within HMPREF1058_RS10295 at 695.371 kb on + strand, within HMPREF1058_RS10290 at 695.395 kb on + strand, within HMPREF1058_RS10290 at 695.517 kb on + strand, within HMPREF1058_RS10290 at 695.517 kb on + strand, within HMPREF1058_RS10290 at 695.537 kb on + strand, within HMPREF1058_RS10290 at 695.537 kb on + strand, within HMPREF1058_RS10290 at 695.538 kb on - strand, within HMPREF1058_RS10290 at 695.547 kb on - strand, within HMPREF1058_RS10290 at 695.606 kb on + strand at 695.617 kb on + strand at 695.625 kb on - strand at 695.658 kb on + strand, within HMPREF1058_RS10285 at 695.658 kb on + strand, within HMPREF1058_RS10285 at 695.663 kb on - strand, within HMPREF1058_RS10285 at 695.691 kb on + strand, within HMPREF1058_RS10285 at 695.746 kb on + strand at 695.767 kb on - strand, within HMPREF1058_RS10285 at 695.848 kb on - strand, within HMPREF1058_RS10285 at 695.858 kb on + strand, within HMPREF1058_RS10285 at 695.858 kb on + strand, within HMPREF1058_RS10285 at 695.859 kb on - strand, within HMPREF1058_RS10285 at 695.883 kb on + strand at 695.907 kb on - strand at 695.912 kb on + strand at 695.912 kb on + strand at 695.922 kb on + strand at 695.923 kb on - strand at 695.923 kb on - strand at 695.926 kb on + strand at 695.927 kb on - strand at 695.928 kb on + strand at 695.929 kb on - strand at 695.957 kb on - strand at 696.002 kb on + strand at 696.002 kb on + strand at 696.053 kb on + strand at 696.054 kb on - strand at 696.085 kb on + strand at 696.111 kb on + strand at 696.111 kb on + strand at 696.112 kb on - strand at 696.199 kb on - strand at 696.305 kb on - strand at 696.328 kb on + strand at 696.328 kb on + strand at 696.376 kb on - strand at 696.380 kb on - strand, within HMPREF1058_RS10275 at 696.380 kb on - strand, within HMPREF1058_RS10275 at 696.382 kb on + strand, within HMPREF1058_RS10275 at 696.383 kb on - strand, within HMPREF1058_RS10275 at 696.383 kb on - strand, within HMPREF1058_RS10275 at 696.449 kb on - strand, within HMPREF1058_RS10275 at 696.473 kb on - strand, within HMPREF1058_RS10275 at 696.527 kb on - strand, within HMPREF1058_RS10275 at 696.529 kb on + strand, within HMPREF1058_RS10275 at 696.531 kb on + strand, within HMPREF1058_RS10275 at 696.531 kb on + strand, within HMPREF1058_RS10275 at 696.532 kb on - strand, within HMPREF1058_RS10275 at 696.532 kb on - strand, within HMPREF1058_RS10275 at 696.532 kb on - strand, within HMPREF1058_RS10275 at 696.570 kb on + strand, within HMPREF1058_RS10275 at 696.571 kb on - strand, within HMPREF1058_RS10275 at 696.594 kb on + strand, within HMPREF1058_RS10275 at 696.605 kb on + strand, within HMPREF1058_RS10275 at 696.605 kb on + strand, within HMPREF1058_RS10275 at 696.606 kb on - strand, within HMPREF1058_RS10275
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 694,330 + HMPREF1058_RS0119660 0.57 -0.6 694,379 + HMPREF1058_RS0119660 0.64 -0.0 694,380 - HMPREF1058_RS0119660 0.64 +1.4 694,380 - HMPREF1058_RS0119660 0.64 -0.8 694,380 - HMPREF1058_RS0119660 0.64 -0.5 694,464 + HMPREF1058_RS0119660 0.74 -2.9 694,537 - HMPREF1058_RS0119660 0.83 -1.1 694,537 - HMPREF1058_RS0119660 0.83 +0.9 694,540 - HMPREF1058_RS0119660 0.84 -0.2 694,588 + HMPREF1058_RS0119660 0.90 -1.6 694,588 + HMPREF1058_RS0119660 0.90 -2.9 694,589 - HMPREF1058_RS0119660 0.90 -0.9 694,600 - -0.5 694,600 - -0.6 694,642 - -1.0 694,646 - -0.5 694,668 - +0.5 694,682 + +0.1 694,683 - -0.2 694,725 - +0.9 694,725 - -0.0 694,745 + -0.2 694,847 - +0.8 694,848 + -0.4 694,849 - +0.6 694,849 - -0.2 694,892 + -1.4 694,902 + HMPREF1058_RS10295 0.11 -0.3 694,977 + HMPREF1058_RS10295 0.27 -0.0 695,166 - HMPREF1058_RS10295 0.67 -0.8 695,371 + HMPREF1058_RS10290 0.18 -1.1 695,395 + HMPREF1058_RS10290 0.26 +1.1 695,517 + HMPREF1058_RS10290 0.66 +0.1 695,517 + HMPREF1058_RS10290 0.66 +1.7 695,537 + HMPREF1058_RS10290 0.72 +0.2 695,537 + HMPREF1058_RS10290 0.72 -0.5 695,538 - HMPREF1058_RS10290 0.73 +1.6 695,547 - HMPREF1058_RS10290 0.75 +0.7 695,606 + -0.7 695,617 + -0.4 695,625 - +0.1 695,658 + HMPREF1058_RS10285 0.14 -1.8 695,658 + HMPREF1058_RS10285 0.14 -0.0 695,663 - HMPREF1058_RS10285 0.16 +0.6 695,691 + HMPREF1058_RS10285 0.26 -3.5 695,746 + -0.0 695,767 - HMPREF1058_RS10285 0.52 +0.3 695,848 - HMPREF1058_RS10285 0.81 +0.8 695,858 + HMPREF1058_RS10285 0.84 -1.9 695,858 + HMPREF1058_RS10285 0.84 -4.6 695,859 - HMPREF1058_RS10285 0.85 -0.7 695,883 + -1.7 695,907 - -0.7 695,912 + -1.7 695,912 + -0.7 695,922 + +0.4 695,923 - -0.4 695,923 - +0.2 695,926 + +1.0 695,927 - +1.2 695,928 + -1.7 695,929 - -0.7 695,957 - +0.0 696,002 + -1.5 696,002 + -0.7 696,053 + -1.5 696,054 - +1.5 696,085 + -1.0 696,111 + -2.1 696,111 + -2.7 696,112 - +1.0 696,199 - -0.2 696,305 - -0.5 696,328 + +0.3 696,328 + +0.5 696,376 - -0.6 696,380 - HMPREF1058_RS10275 0.14 -0.1 696,380 - HMPREF1058_RS10275 0.14 -1.6 696,382 + HMPREF1058_RS10275 0.14 +0.2 696,383 - HMPREF1058_RS10275 0.14 -1.1 696,383 - HMPREF1058_RS10275 0.14 -1.3 696,449 - HMPREF1058_RS10275 0.20 -1.5 696,473 - HMPREF1058_RS10275 0.22 -2.8 696,527 - HMPREF1058_RS10275 0.27 -1.0 696,529 + HMPREF1058_RS10275 0.27 +0.1 696,531 + HMPREF1058_RS10275 0.27 -0.7 696,531 + HMPREF1058_RS10275 0.27 -0.0 696,532 - HMPREF1058_RS10275 0.27 -0.0 696,532 - HMPREF1058_RS10275 0.27 -2.5 696,532 - HMPREF1058_RS10275 0.27 +1.0 696,570 + HMPREF1058_RS10275 0.30 -1.0 696,571 - HMPREF1058_RS10275 0.30 +0.0 696,594 + HMPREF1058_RS10275 0.32 +1.0 696,605 + HMPREF1058_RS10275 0.33 +1.5 696,605 + HMPREF1058_RS10275 0.33 -0.8 696,606 - HMPREF1058_RS10275 0.33 -0.5
Or see this region's nucleotide sequence