Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS21620 and HMPREF1058_RS10185 are separated by 1 nucleotides HMPREF1058_RS10185 and HMPREF1058_RS10180 are separated by 1 nucleotides HMPREF1058_RS10180 and HMPREF1058_RS10175 are separated by 19 nucleotides HMPREF1058_RS10175 and HMPREF1058_RS10170 overlap by 4 nucleotides HMPREF1058_RS10170 and HMPREF1058_RS10165 are separated by 34 nucleotides
HMPREF1058_RS21620: HMPREF1058_RS21620 - hypothetical protein, at 710,763 to 710,936
_RS21620
HMPREF1058_RS10185: HMPREF1058_RS10185 - hypothetical protein, at 710,938 to 711,393
_RS10185
HMPREF1058_RS10180: HMPREF1058_RS10180 - N-6-adenine-methyltransferase, at 711,395 to 711,883
_RS10180
HMPREF1058_RS10175: HMPREF1058_RS10175 - hypothetical protein, at 711,903 to 712,466
_RS10175
HMPREF1058_RS10170: HMPREF1058_RS10170 - ATP-binding protein, at 712,463 to 713,008
_RS10170
HMPREF1058_RS10165: HMPREF1058_RS10165 - hypothetical protein, at 713,043 to 713,825
_RS10165
Position (kb) 711
712
713 Strain fitness (log2 ratio) -2
-1
0
1
2 at 710.937 kb on - strand at 711.013 kb on + strand, within HMPREF1058_RS10185 at 711.014 kb on - strand, within HMPREF1058_RS10185 at 711.085 kb on + strand, within HMPREF1058_RS10185 at 711.096 kb on - strand, within HMPREF1058_RS10185 at 711.111 kb on + strand, within HMPREF1058_RS10185 at 711.112 kb on - strand, within HMPREF1058_RS10185 at 711.113 kb on + strand, within HMPREF1058_RS10185 at 711.113 kb on + strand, within HMPREF1058_RS10185 at 711.113 kb on + strand, within HMPREF1058_RS10185 at 711.114 kb on - strand, within HMPREF1058_RS10185 at 711.254 kb on - strand, within HMPREF1058_RS10185 at 711.279 kb on + strand, within HMPREF1058_RS10185 at 711.364 kb on + strand at 711.472 kb on + strand, within HMPREF1058_RS10180 at 711.535 kb on + strand, within HMPREF1058_RS10180 at 711.607 kb on + strand, within HMPREF1058_RS10180 at 711.620 kb on + strand, within HMPREF1058_RS10180 at 711.743 kb on + strand, within HMPREF1058_RS10180 at 711.744 kb on - strand at 711.745 kb on + strand, within HMPREF1058_RS10180 at 711.745 kb on + strand, within HMPREF1058_RS10180 at 711.745 kb on + strand, within HMPREF1058_RS10180 at 711.745 kb on + strand, within HMPREF1058_RS10180 at 711.746 kb on - strand, within HMPREF1058_RS10180 at 711.746 kb on - strand at 712.005 kb on + strand, within HMPREF1058_RS10175 at 712.025 kb on + strand, within HMPREF1058_RS10175 at 712.052 kb on - strand at 712.078 kb on + strand, within HMPREF1058_RS10175 at 712.148 kb on + strand, within HMPREF1058_RS10175 at 712.208 kb on + strand, within HMPREF1058_RS10175 at 712.208 kb on + strand, within HMPREF1058_RS10175 at 712.220 kb on - strand, within HMPREF1058_RS10175 at 712.473 kb on + strand at 712.492 kb on - strand at 712.526 kb on + strand, within HMPREF1058_RS10170 at 712.597 kb on + strand, within HMPREF1058_RS10170 at 712.597 kb on + strand, within HMPREF1058_RS10170 at 712.602 kb on + strand, within HMPREF1058_RS10170 at 712.676 kb on + strand, within HMPREF1058_RS10170 at 712.804 kb on + strand, within HMPREF1058_RS10170 at 712.811 kb on + strand, within HMPREF1058_RS10170 at 712.875 kb on + strand, within HMPREF1058_RS10170 at 712.889 kb on + strand, within HMPREF1058_RS10170 at 712.896 kb on + strand, within HMPREF1058_RS10170 at 712.966 kb on + strand at 712.999 kb on + strand at 712.999 kb on + strand at 712.999 kb on + strand at 712.999 kb on + strand at 713.000 kb on - strand at 713.039 kb on + strand at 713.119 kb on + strand at 713.119 kb on + strand at 713.127 kb on + strand, within HMPREF1058_RS10165 at 713.209 kb on + strand, within HMPREF1058_RS10165 at 713.209 kb on + strand, within HMPREF1058_RS10165 at 713.275 kb on + strand, within HMPREF1058_RS10165 at 713.308 kb on + strand, within HMPREF1058_RS10165
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 710,937 - -1.5 711,013 + HMPREF1058_RS10185 0.16 +0.1 711,014 - HMPREF1058_RS10185 0.17 +0.1 711,085 + HMPREF1058_RS10185 0.32 -0.1 711,096 - HMPREF1058_RS10185 0.35 +0.8 711,111 + HMPREF1058_RS10185 0.38 -1.6 711,112 - HMPREF1058_RS10185 0.38 -0.1 711,113 + HMPREF1058_RS10185 0.38 +0.1 711,113 + HMPREF1058_RS10185 0.38 -0.0 711,113 + HMPREF1058_RS10185 0.38 -0.0 711,114 - HMPREF1058_RS10185 0.39 +2.0 711,254 - HMPREF1058_RS10185 0.69 +0.9 711,279 + HMPREF1058_RS10185 0.75 -0.1 711,364 + -0.8 711,472 + HMPREF1058_RS10180 0.16 +0.7 711,535 + HMPREF1058_RS10180 0.29 -0.3 711,607 + HMPREF1058_RS10180 0.43 -0.2 711,620 + HMPREF1058_RS10180 0.46 -0.0 711,743 + HMPREF1058_RS10180 0.71 +1.0 711,744 - -0.2 711,745 + HMPREF1058_RS10180 0.72 +2.0 711,745 + HMPREF1058_RS10180 0.72 -0.7 711,745 + HMPREF1058_RS10180 0.72 -0.4 711,745 + HMPREF1058_RS10180 0.72 +0.2 711,746 - HMPREF1058_RS10180 0.72 -1.3 711,746 - -1.8 712,005 + HMPREF1058_RS10175 0.18 -0.6 712,025 + HMPREF1058_RS10175 0.22 -1.8 712,052 - -1.3 712,078 + HMPREF1058_RS10175 0.31 +0.5 712,148 + HMPREF1058_RS10175 0.43 +0.1 712,208 + HMPREF1058_RS10175 0.54 +0.4 712,208 + HMPREF1058_RS10175 0.54 +1.6 712,220 - HMPREF1058_RS10175 0.56 +0.4 712,473 + -2.0 712,492 - -1.2 712,526 + HMPREF1058_RS10170 0.12 -2.0 712,597 + HMPREF1058_RS10170 0.25 -0.3 712,597 + HMPREF1058_RS10170 0.25 -0.1 712,602 + HMPREF1058_RS10170 0.25 -0.5 712,676 + HMPREF1058_RS10170 0.39 -1.0 712,804 + HMPREF1058_RS10170 0.62 -0.8 712,811 + HMPREF1058_RS10170 0.64 -0.9 712,875 + HMPREF1058_RS10170 0.75 +0.0 712,889 + HMPREF1058_RS10170 0.78 -0.0 712,896 + HMPREF1058_RS10170 0.79 +0.1 712,966 + +0.2 712,999 + -0.5 712,999 + -0.2 712,999 + +0.9 712,999 + +0.0 713,000 - -0.4 713,039 + +2.4 713,119 + +0.2 713,119 + -0.2 713,127 + HMPREF1058_RS10165 0.11 +0.9 713,209 + HMPREF1058_RS10165 0.21 -1.2 713,209 + HMPREF1058_RS10165 0.21 +0.2 713,275 + HMPREF1058_RS10165 0.30 -1.5 713,308 + HMPREF1058_RS10165 0.34 -1.6
Or see this region's nucleotide sequence