Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10015 and HMPREF1058_RS10010 are separated by 17 nucleotides HMPREF1058_RS10010 and HMPREF1058_RS10005 are separated by 11 nucleotides HMPREF1058_RS10005 and HMPREF1058_RS10000 are separated by 280 nucleotides HMPREF1058_RS10000 and HMPREF1058_RS09995 are separated by 102 nucleotides
HMPREF1058_RS10015: HMPREF1058_RS10015 - DUF4906 domain-containing protein, at 746,259 to 748,373
_RS10015
HMPREF1058_RS10010: HMPREF1058_RS10010 - hypothetical protein, at 748,391 to 748,636
_RS10010
HMPREF1058_RS10005: HMPREF1058_RS10005 - hypothetical protein, at 748,648 to 748,947
_RS10005
HMPREF1058_RS10000: HMPREF1058_RS10000 - 30S ribosomal protein S15, at 749,228 to 749,497
_RS10000
HMPREF1058_RS09995: HMPREF1058_RS09995 - S-ribosylhomocysteine lyase, at 749,600 to 750,085
_RS09995
Position (kb) 748
749 Strain fitness (log2 ratio) -2
-1
0
1
2 at 747.531 kb on + strand, within HMPREF1058_RS10015 at 747.532 kb on - strand, within HMPREF1058_RS10015 at 747.534 kb on - strand, within HMPREF1058_RS10015 at 747.631 kb on - strand, within HMPREF1058_RS10015 at 747.631 kb on - strand, within HMPREF1058_RS10015 at 747.654 kb on - strand, within HMPREF1058_RS10015 at 747.675 kb on + strand, within HMPREF1058_RS10015 at 747.676 kb on - strand, within HMPREF1058_RS10015 at 747.685 kb on - strand, within HMPREF1058_RS10015 at 747.695 kb on - strand, within HMPREF1058_RS10015 at 747.719 kb on + strand, within HMPREF1058_RS10015 at 747.719 kb on + strand, within HMPREF1058_RS10015 at 747.720 kb on - strand, within HMPREF1058_RS10015 at 747.803 kb on + strand, within HMPREF1058_RS10015 at 747.808 kb on - strand, within HMPREF1058_RS10015 at 747.906 kb on + strand, within HMPREF1058_RS10015 at 747.906 kb on + strand, within HMPREF1058_RS10015 at 747.906 kb on + strand, within HMPREF1058_RS10015 at 747.907 kb on - strand, within HMPREF1058_RS10015 at 747.907 kb on - strand, within HMPREF1058_RS10015 at 748.008 kb on + strand, within HMPREF1058_RS10015 at 748.010 kb on + strand, within HMPREF1058_RS10015 at 748.033 kb on - strand, within HMPREF1058_RS10015 at 748.132 kb on - strand, within HMPREF1058_RS10015 at 748.132 kb on - strand, within HMPREF1058_RS10015 at 748.184 kb on - strand at 748.184 kb on - strand at 748.211 kb on + strand at 748.211 kb on + strand at 748.211 kb on + strand at 748.212 kb on - strand at 748.251 kb on - strand at 748.278 kb on + strand at 748.280 kb on + strand at 748.281 kb on - strand at 748.281 kb on - strand at 748.352 kb on + strand at 748.353 kb on - strand at 748.355 kb on + strand at 748.355 kb on + strand at 748.356 kb on - strand at 748.365 kb on + strand at 748.372 kb on - strand at 748.376 kb on - strand at 748.432 kb on + strand, within HMPREF1058_RS10010 at 748.535 kb on - strand, within HMPREF1058_RS10010 at 748.618 kb on - strand at 748.658 kb on + strand at 748.661 kb on + strand at 748.701 kb on - strand, within HMPREF1058_RS10005 at 748.702 kb on + strand, within HMPREF1058_RS10005 at 748.704 kb on + strand, within HMPREF1058_RS10005 at 748.704 kb on + strand, within HMPREF1058_RS10005 at 748.704 kb on + strand at 748.705 kb on - strand, within HMPREF1058_RS10005 at 748.738 kb on + strand, within HMPREF1058_RS10005 at 748.739 kb on - strand, within HMPREF1058_RS10005 at 748.842 kb on - strand, within HMPREF1058_RS10005 at 748.842 kb on - strand, within HMPREF1058_RS10005 at 748.893 kb on - strand, within HMPREF1058_RS10005 at 748.952 kb on - strand at 749.089 kb on + strand at 749.560 kb on - strand at 749.572 kb on + strand at 749.611 kb on + strand at 749.616 kb on + strand at 749.617 kb on - strand at 749.619 kb on + strand at 749.620 kb on - strand at 749.620 kb on - strand at 749.620 kb on - strand at 749.620 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 747,531 + HMPREF1058_RS10015 0.60 -0.7 747,532 - HMPREF1058_RS10015 0.60 +0.2 747,534 - HMPREF1058_RS10015 0.60 -0.2 747,631 - HMPREF1058_RS10015 0.65 -0.1 747,631 - HMPREF1058_RS10015 0.65 -0.3 747,654 - HMPREF1058_RS10015 0.66 -0.5 747,675 + HMPREF1058_RS10015 0.67 -0.0 747,676 - HMPREF1058_RS10015 0.67 +0.2 747,685 - HMPREF1058_RS10015 0.67 -0.2 747,695 - HMPREF1058_RS10015 0.68 +0.4 747,719 + HMPREF1058_RS10015 0.69 -0.7 747,719 + HMPREF1058_RS10015 0.69 +0.5 747,720 - HMPREF1058_RS10015 0.69 -0.8 747,803 + HMPREF1058_RS10015 0.73 +0.2 747,808 - HMPREF1058_RS10015 0.73 -0.8 747,906 + HMPREF1058_RS10015 0.78 +0.6 747,906 + HMPREF1058_RS10015 0.78 +0.1 747,906 + HMPREF1058_RS10015 0.78 -0.9 747,907 - HMPREF1058_RS10015 0.78 -0.6 747,907 - HMPREF1058_RS10015 0.78 -0.1 748,008 + HMPREF1058_RS10015 0.83 -0.4 748,010 + HMPREF1058_RS10015 0.83 +0.7 748,033 - HMPREF1058_RS10015 0.84 +0.4 748,132 - HMPREF1058_RS10015 0.89 +0.7 748,132 - HMPREF1058_RS10015 0.89 -0.0 748,184 - -0.3 748,184 - -0.2 748,211 + +0.1 748,211 + +0.5 748,211 + -0.6 748,212 - -1.2 748,251 - +0.5 748,278 + +0.9 748,280 + +0.5 748,281 - -0.3 748,281 - +0.5 748,352 + -0.6 748,353 - +1.9 748,355 + +0.2 748,355 + +1.6 748,356 - -0.7 748,365 + +0.3 748,372 - -0.5 748,376 - -0.6 748,432 + HMPREF1058_RS10010 0.17 +0.1 748,535 - HMPREF1058_RS10010 0.59 +1.5 748,618 - -0.2 748,658 + -0.7 748,661 + +0.7 748,701 - HMPREF1058_RS10005 0.18 -1.9 748,702 + HMPREF1058_RS10005 0.18 +0.9 748,704 + HMPREF1058_RS10005 0.19 -0.6 748,704 + HMPREF1058_RS10005 0.19 -0.6 748,704 + -0.6 748,705 - HMPREF1058_RS10005 0.19 -0.1 748,738 + HMPREF1058_RS10005 0.30 +0.2 748,739 - HMPREF1058_RS10005 0.30 +0.7 748,842 - HMPREF1058_RS10005 0.65 -0.1 748,842 - HMPREF1058_RS10005 0.65 +1.6 748,893 - HMPREF1058_RS10005 0.82 -0.5 748,952 - -0.3 749,089 + -0.2 749,560 - -0.9 749,572 + -0.4 749,611 + -0.5 749,616 + -0.1 749,617 - +0.9 749,619 + -0.2 749,620 - +0.2 749,620 - -0.7 749,620 - +0.2 749,620 - +1.0
Or see this region's nucleotide sequence