Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS09990

Experiment: Xylan from corn core 2.5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1058_RS10000 and HMPREF1058_RS09995 are separated by 102 nucleotidesHMPREF1058_RS09995 and HMPREF1058_RS09990 are separated by 11 nucleotides HMPREF1058_RS10000: HMPREF1058_RS10000 - 30S ribosomal protein S15, at 749,228 to 749,497 _RS10000 HMPREF1058_RS09995: HMPREF1058_RS09995 - S-ribosylhomocysteine lyase, at 749,600 to 750,085 _RS09995 HMPREF1058_RS09990: HMPREF1058_RS09990 - 5'-methylthioadenosine/adenosylhomocysteine nucleosidase, at 750,097 to 750,792 _RS09990 Position (kb) 750 751Strain fitness (log2 ratio) -2 -1 0 1 2 3at 749.560 kb on - strandat 749.572 kb on + strandat 749.611 kb on + strandat 749.616 kb on + strandat 749.617 kb on - strandat 749.619 kb on + strandat 749.620 kb on - strandat 749.620 kb on - strandat 749.620 kb on - strandat 749.620 kb on - strandat 749.706 kb on + strand, within HMPREF1058_RS09995at 749.795 kb on - strand, within HMPREF1058_RS09995at 749.830 kb on - strand, within HMPREF1058_RS09995at 749.862 kb on + strand, within HMPREF1058_RS09995at 749.884 kb on + strand, within HMPREF1058_RS09995at 749.885 kb on - strand, within HMPREF1058_RS09995at 749.885 kb on - strand, within HMPREF1058_RS09995at 749.921 kb on + strand, within HMPREF1058_RS09995at 749.921 kb on + strand, within HMPREF1058_RS09995at 749.921 kb on + strand, within HMPREF1058_RS09995at 749.927 kb on - strand, within HMPREF1058_RS09995at 750.030 kb on + strand, within HMPREF1058_RS09995at 750.030 kb on + strandat 750.030 kb on + strand, within HMPREF1058_RS09995at 750.030 kb on + strand, within HMPREF1058_RS09995at 750.031 kb on - strand, within HMPREF1058_RS09995at 750.031 kb on - strand, within HMPREF1058_RS09995at 750.031 kb on - strand, within HMPREF1058_RS09995at 750.035 kb on - strand, within HMPREF1058_RS09995at 750.088 kb on + strandat 750.100 kb on + strandat 750.179 kb on + strand, within HMPREF1058_RS09990at 750.179 kb on + strand, within HMPREF1058_RS09990at 750.242 kb on - strand, within HMPREF1058_RS09990at 750.246 kb on + strand, within HMPREF1058_RS09990at 750.247 kb on - strand, within HMPREF1058_RS09990at 750.248 kb on + strand, within HMPREF1058_RS09990at 750.248 kb on + strand, within HMPREF1058_RS09990at 750.248 kb on + strand, within HMPREF1058_RS09990at 750.250 kb on + strand, within HMPREF1058_RS09990at 750.250 kb on + strand, within HMPREF1058_RS09990at 750.250 kb on + strand, within HMPREF1058_RS09990at 750.250 kb on + strand, within HMPREF1058_RS09990at 750.250 kb on + strand, within HMPREF1058_RS09990at 750.251 kb on - strand, within HMPREF1058_RS09990at 750.251 kb on - strand, within HMPREF1058_RS09990at 750.251 kb on - strand, within HMPREF1058_RS09990at 750.252 kb on + strand, within HMPREF1058_RS09990at 750.252 kb on + strand, within HMPREF1058_RS09990at 750.253 kb on - strand, within HMPREF1058_RS09990at 750.254 kb on + strand, within HMPREF1058_RS09990at 750.289 kb on + strand, within HMPREF1058_RS09990at 750.460 kb on + strand, within HMPREF1058_RS09990at 750.461 kb on - strand, within HMPREF1058_RS09990at 750.470 kb on + strand, within HMPREF1058_RS09990at 750.474 kb on + strand, within HMPREF1058_RS09990at 750.475 kb on - strand, within HMPREF1058_RS09990at 750.493 kb on + strand, within HMPREF1058_RS09990at 750.493 kb on + strand, within HMPREF1058_RS09990at 750.494 kb on - strand, within HMPREF1058_RS09990at 750.494 kb on - strand, within HMPREF1058_RS09990at 750.494 kb on - strand, within HMPREF1058_RS09990at 750.505 kb on + strand, within HMPREF1058_RS09990at 750.505 kb on + strand, within HMPREF1058_RS09990at 750.506 kb on - strand, within HMPREF1058_RS09990at 750.639 kb on + strand, within HMPREF1058_RS09990at 750.669 kb on + strand, within HMPREF1058_RS09990at 750.775 kb on + strandat 750.776 kb on - strandat 750.776 kb on - strandat 750.803 kb on + strandat 750.807 kb on + strandat 750.838 kb on + strandat 750.838 kb on + strandat 750.838 kb on + strandat 750.839 kb on - strandat 750.839 kb on - strandat 750.839 kb on - strandat 750.877 kb on + strandat 750.903 kb on - strandat 750.921 kb on + strandat 750.942 kb on - strandat 750.942 kb on - strandat 750.945 kb on + strandat 751.052 kb on - strandat 751.084 kb on + strandat 751.127 kb on + strandat 751.128 kb on - strandat 751.186 kb on - strandat 751.400 kb on + strandat 751.400 kb on + strandat 751.677 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C)
remove
749,560 - -0.9
749,572 + -0.4
749,611 + -0.5
749,616 + -0.1
749,617 - +0.9
749,619 + -0.2
749,620 - +0.2
749,620 - -0.7
749,620 - +0.2
749,620 - +1.0
749,706 + HMPREF1058_RS09995 0.22 -1.6
749,795 - HMPREF1058_RS09995 0.40 +2.2
749,830 - HMPREF1058_RS09995 0.47 -1.0
749,862 + HMPREF1058_RS09995 0.54 -0.4
749,884 + HMPREF1058_RS09995 0.58 -0.7
749,885 - HMPREF1058_RS09995 0.59 -0.4
749,885 - HMPREF1058_RS09995 0.59 -0.3
749,921 + HMPREF1058_RS09995 0.66 -1.3
749,921 + HMPREF1058_RS09995 0.66 +1.0
749,921 + HMPREF1058_RS09995 0.66 -0.1
749,927 - HMPREF1058_RS09995 0.67 -0.5
750,030 + HMPREF1058_RS09995 0.88 -0.7
750,030 + -0.3
750,030 + HMPREF1058_RS09995 0.88 -0.2
750,030 + HMPREF1058_RS09995 0.88 +1.3
750,031 - HMPREF1058_RS09995 0.89 -0.4
750,031 - HMPREF1058_RS09995 0.89 +0.7
750,031 - HMPREF1058_RS09995 0.89 +0.8
750,035 - HMPREF1058_RS09995 0.90 -0.5
750,088 + -2.4
750,100 + -0.7
750,179 + HMPREF1058_RS09990 0.12 +1.3
750,179 + HMPREF1058_RS09990 0.12 +2.0
750,242 - HMPREF1058_RS09990 0.21 +0.9
750,246 + HMPREF1058_RS09990 0.21 -1.8
750,247 - HMPREF1058_RS09990 0.22 +3.2
750,248 + HMPREF1058_RS09990 0.22 +1.4
750,248 + HMPREF1058_RS09990 0.22 +1.4
750,248 + HMPREF1058_RS09990 0.22 +2.4
750,250 + HMPREF1058_RS09990 0.22 +1.9
750,250 + HMPREF1058_RS09990 0.22 +1.6
750,250 + HMPREF1058_RS09990 0.22 +1.0
750,250 + HMPREF1058_RS09990 0.22 +1.4
750,250 + HMPREF1058_RS09990 0.22 +1.1
750,251 - HMPREF1058_RS09990 0.22 +0.8
750,251 - HMPREF1058_RS09990 0.22 -0.0
750,251 - HMPREF1058_RS09990 0.22 +2.5
750,252 + HMPREF1058_RS09990 0.22 +1.2
750,252 + HMPREF1058_RS09990 0.22 +3.3
750,253 - HMPREF1058_RS09990 0.22 +1.7
750,254 + HMPREF1058_RS09990 0.23 +0.5
750,289 + HMPREF1058_RS09990 0.28 +1.0
750,460 + HMPREF1058_RS09990 0.52 +3.6
750,461 - HMPREF1058_RS09990 0.52 +1.7
750,470 + HMPREF1058_RS09990 0.54 +1.5
750,474 + HMPREF1058_RS09990 0.54 +1.1
750,475 - HMPREF1058_RS09990 0.54 +0.9
750,493 + HMPREF1058_RS09990 0.57 +1.1
750,493 + HMPREF1058_RS09990 0.57 +1.9
750,494 - HMPREF1058_RS09990 0.57 -0.7
750,494 - HMPREF1058_RS09990 0.57 -0.0
750,494 - HMPREF1058_RS09990 0.57 +1.4
750,505 + HMPREF1058_RS09990 0.59 +0.6
750,505 + HMPREF1058_RS09990 0.59 +1.8
750,506 - HMPREF1058_RS09990 0.59 +2.4
750,639 + HMPREF1058_RS09990 0.78 +1.7
750,669 + HMPREF1058_RS09990 0.82 +0.9
750,775 + +0.6
750,776 - +1.3
750,776 - +1.2
750,803 + +0.7
750,807 + +1.2
750,838 + -1.9
750,838 + -0.2
750,838 + +1.6
750,839 - +0.0
750,839 - +0.2
750,839 - +0.9
750,877 + +1.9
750,903 - -0.6
750,921 + -0.6
750,942 - -0.2
750,942 - -0.1
750,945 + +0.1
751,052 - +0.6
751,084 + -0.6
751,127 + -0.1
751,128 - +0.0
751,186 - -0.1
751,400 + -1.4
751,400 + -0.8
751,677 - -0.2

Or see this region's nucleotide sequence