Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS20740 and HMPREF1058_RS09985 are separated by 11 nucleotides HMPREF1058_RS09985 and HMPREF1058_RS20745 are separated by 12 nucleotides HMPREF1058_RS20745 and HMPREF1058_RS09980 are separated by 15 nucleotides HMPREF1058_RS09980 and HMPREF1058_RS09975 are separated by 2 nucleotides
HMPREF1058_RS20740: HMPREF1058_RS20740 - hypothetical protein, at 751,869 to 752,084
_RS20740
HMPREF1058_RS09985: HMPREF1058_RS09985 - hypothetical protein, at 752,096 to 752,317
_RS09985
HMPREF1058_RS20745: HMPREF1058_RS20745 - hypothetical protein, at 752,330 to 752,926
_RS20745
HMPREF1058_RS09980: HMPREF1058_RS09980 - PcfK-like family protein, at 752,942 to 753,364
_RS09980
HMPREF1058_RS09975: HMPREF1058_RS09975 - PcfJ family protein, at 753,367 to 754,656
_RS09975
Position (kb) 752
753
754 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 752.139 kb on - strand, within HMPREF1058_RS09985 at 752.156 kb on - strand, within HMPREF1058_RS09985 at 752.165 kb on + strand, within HMPREF1058_RS09985 at 752.166 kb on - strand, within HMPREF1058_RS09985 at 752.285 kb on + strand, within HMPREF1058_RS09985 at 752.286 kb on - strand, within HMPREF1058_RS09985 at 752.351 kb on + strand at 752.351 kb on + strand at 752.368 kb on - strand at 752.403 kb on - strand, within HMPREF1058_RS20745 at 752.606 kb on + strand, within HMPREF1058_RS20745 at 752.655 kb on - strand, within HMPREF1058_RS20745 at 752.655 kb on - strand, within HMPREF1058_RS20745 at 753.049 kb on - strand, within HMPREF1058_RS09980 at 753.066 kb on - strand, within HMPREF1058_RS09980 at 753.166 kb on - strand, within HMPREF1058_RS09980 at 753.176 kb on - strand, within HMPREF1058_RS09980 at 753.337 kb on - strand at 753.387 kb on - strand at 753.448 kb on + strand at 753.774 kb on + strand, within HMPREF1058_RS09975 at 753.774 kb on + strand, within HMPREF1058_RS09975 at 753.775 kb on - strand, within HMPREF1058_RS09975 at 753.818 kb on - strand, within HMPREF1058_RS09975 at 753.821 kb on - strand, within HMPREF1058_RS09975 at 753.828 kb on - strand, within HMPREF1058_RS09975 at 753.959 kb on - strand, within HMPREF1058_RS09975 at 753.968 kb on + strand, within HMPREF1058_RS09975 at 754.107 kb on - strand, within HMPREF1058_RS09975 at 754.107 kb on - strand, within HMPREF1058_RS09975 at 754.111 kb on - strand, within HMPREF1058_RS09975 at 754.160 kb on + strand, within HMPREF1058_RS09975 at 754.205 kb on - strand, within HMPREF1058_RS09975 at 754.246 kb on - strand, within HMPREF1058_RS09975 at 754.246 kb on - strand, within HMPREF1058_RS09975 at 754.344 kb on - strand, within HMPREF1058_RS09975
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 752,139 - HMPREF1058_RS09985 0.19 +0.6 752,156 - HMPREF1058_RS09985 0.27 +0.0 752,165 + HMPREF1058_RS09985 0.31 -0.6 752,166 - HMPREF1058_RS09985 0.32 -1.3 752,285 + HMPREF1058_RS09985 0.85 -1.0 752,286 - HMPREF1058_RS09985 0.86 -0.4 752,351 + -2.7 752,351 + -0.1 752,368 - -0.4 752,403 - HMPREF1058_RS20745 0.12 -0.5 752,606 + HMPREF1058_RS20745 0.46 +1.0 752,655 - HMPREF1058_RS20745 0.54 +0.7 752,655 - HMPREF1058_RS20745 0.54 +1.0 753,049 - HMPREF1058_RS09980 0.25 +3.1 753,066 - HMPREF1058_RS09980 0.29 -0.3 753,166 - HMPREF1058_RS09980 0.53 -0.5 753,176 - HMPREF1058_RS09980 0.55 -0.4 753,337 - -0.1 753,387 - -1.8 753,448 + -0.4 753,774 + HMPREF1058_RS09975 0.32 +1.0 753,774 + HMPREF1058_RS09975 0.32 -1.3 753,775 - HMPREF1058_RS09975 0.32 -1.9 753,818 - HMPREF1058_RS09975 0.35 +0.5 753,821 - HMPREF1058_RS09975 0.35 -1.1 753,828 - HMPREF1058_RS09975 0.36 +0.6 753,959 - HMPREF1058_RS09975 0.46 -0.9 753,968 + HMPREF1058_RS09975 0.47 +0.4 754,107 - HMPREF1058_RS09975 0.57 -0.9 754,107 - HMPREF1058_RS09975 0.57 -0.6 754,111 - HMPREF1058_RS09975 0.58 -1.0 754,160 + HMPREF1058_RS09975 0.61 -1.7 754,205 - HMPREF1058_RS09975 0.65 +0.4 754,246 - HMPREF1058_RS09975 0.68 +0.7 754,246 - HMPREF1058_RS09975 0.68 -0.1 754,344 - HMPREF1058_RS09975 0.76 +0.4
Or see this region's nucleotide sequence