Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS09740

Experiment: Xylan from corn core 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS09745 and HMPREF1058_RS09740 are separated by 12 nucleotidesHMPREF1058_RS09740 and HMPREF1058_RS09735 overlap by 28 nucleotides HMPREF1058_RS09745: HMPREF1058_RS09745 - glycosyltransferase, at 805,300 to 806,562 _RS09745 HMPREF1058_RS09740: HMPREF1058_RS09740 - glycosyltransferase family 4 protein, at 806,575 to 807,690 _RS09740 HMPREF1058_RS09735: HMPREF1058_RS09735 - hypothetical protein, at 807,663 to 808,679 _RS09735 Position (kb) 806 807 808Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 805.579 kb on + strand, within HMPREF1058_RS09745at 805.592 kb on - strand, within HMPREF1058_RS09745at 805.610 kb on - strand, within HMPREF1058_RS09745at 805.658 kb on + strand, within HMPREF1058_RS09745at 805.659 kb on - strand, within HMPREF1058_RS09745at 805.674 kb on + strand, within HMPREF1058_RS09745at 805.697 kb on + strand, within HMPREF1058_RS09745at 805.698 kb on - strand, within HMPREF1058_RS09745at 805.791 kb on - strand, within HMPREF1058_RS09745at 805.981 kb on + strand, within HMPREF1058_RS09745at 806.000 kb on - strand, within HMPREF1058_RS09745at 806.050 kb on - strand, within HMPREF1058_RS09745at 806.055 kb on - strand, within HMPREF1058_RS09745at 806.115 kb on - strand, within HMPREF1058_RS09745at 806.163 kb on + strand, within HMPREF1058_RS09745at 806.163 kb on + strand, within HMPREF1058_RS09745at 806.205 kb on + strand, within HMPREF1058_RS09745at 806.233 kb on - strand, within HMPREF1058_RS09745at 806.233 kb on - strand, within HMPREF1058_RS09745at 806.233 kb on - strand, within HMPREF1058_RS09745at 806.233 kb on - strand, within HMPREF1058_RS09745at 806.334 kb on + strand, within HMPREF1058_RS09745at 806.364 kb on + strand, within HMPREF1058_RS09745at 806.413 kb on + strand, within HMPREF1058_RS09745at 806.414 kb on - strand, within HMPREF1058_RS09745at 806.428 kb on + strand, within HMPREF1058_RS09745at 806.429 kb on - strand, within HMPREF1058_RS09745at 806.429 kb on - strand, within HMPREF1058_RS09745at 806.470 kb on + strandat 806.471 kb on - strandat 806.542 kb on - strandat 806.550 kb on + strandat 806.550 kb on + strandat 806.550 kb on + strandat 806.555 kb on - strandat 806.555 kb on - strandat 806.766 kb on - strand, within HMPREF1058_RS09740at 806.766 kb on - strand, within HMPREF1058_RS09740at 806.783 kb on - strand, within HMPREF1058_RS09740at 806.797 kb on + strand, within HMPREF1058_RS09740at 806.797 kb on + strand, within HMPREF1058_RS09740at 806.883 kb on + strand, within HMPREF1058_RS09740at 806.949 kb on - strand, within HMPREF1058_RS09740at 806.967 kb on + strand, within HMPREF1058_RS09740at 806.970 kb on - strand, within HMPREF1058_RS09740at 807.021 kb on - strand, within HMPREF1058_RS09740at 807.046 kb on + strand, within HMPREF1058_RS09740at 807.047 kb on - strand, within HMPREF1058_RS09740at 807.050 kb on + strand, within HMPREF1058_RS09740at 807.101 kb on - strand, within HMPREF1058_RS09740at 807.101 kb on - strand, within HMPREF1058_RS09740at 807.101 kb on - strand, within HMPREF1058_RS09740at 807.101 kb on - strand, within HMPREF1058_RS09740at 807.129 kb on + strand, within HMPREF1058_RS09740at 807.176 kb on + strand, within HMPREF1058_RS09740at 807.176 kb on + strand, within HMPREF1058_RS09740at 807.177 kb on - strand, within HMPREF1058_RS09740at 807.279 kb on + strand, within HMPREF1058_RS09740at 807.279 kb on + strand, within HMPREF1058_RS09740at 807.296 kb on + strand, within HMPREF1058_RS09740at 807.297 kb on - strand, within HMPREF1058_RS09740at 807.400 kb on + strand, within HMPREF1058_RS09740at 807.401 kb on - strand, within HMPREF1058_RS09740at 807.433 kb on - strand, within HMPREF1058_RS09740at 807.477 kb on + strand, within HMPREF1058_RS09740at 807.485 kb on + strand, within HMPREF1058_RS09740at 807.493 kb on + strand, within HMPREF1058_RS09740at 807.494 kb on - strand, within HMPREF1058_RS09740at 807.525 kb on + strand, within HMPREF1058_RS09740at 807.525 kb on + strand, within HMPREF1058_RS09740at 807.595 kb on - strandat 807.648 kb on - strandat 807.651 kb on + strandat 807.783 kb on - strand, within HMPREF1058_RS09735at 807.828 kb on - strand, within HMPREF1058_RS09735at 807.830 kb on - strand, within HMPREF1058_RS09735at 807.835 kb on - strand, within HMPREF1058_RS09735at 807.850 kb on + strand, within HMPREF1058_RS09735at 807.851 kb on - strand, within HMPREF1058_RS09735at 807.927 kb on - strand, within HMPREF1058_RS09735at 808.048 kb on + strand, within HMPREF1058_RS09735at 808.048 kb on + strand, within HMPREF1058_RS09735at 808.051 kb on + strand, within HMPREF1058_RS09735at 808.085 kb on + strand, within HMPREF1058_RS09735at 808.088 kb on - strand, within HMPREF1058_RS09735at 808.088 kb on - strand, within HMPREF1058_RS09735at 808.169 kb on - strand, within HMPREF1058_RS09735at 808.249 kb on + strand, within HMPREF1058_RS09735at 808.249 kb on + strand, within HMPREF1058_RS09735at 808.250 kb on - strand, within HMPREF1058_RS09735at 808.388 kb on + strand, within HMPREF1058_RS09735at 808.388 kb on + strand, within HMPREF1058_RS09735at 808.430 kb on - strand, within HMPREF1058_RS09735at 808.450 kb on + strand, within HMPREF1058_RS09735at 808.465 kb on + strand, within HMPREF1058_RS09735at 808.465 kb on + strand, within HMPREF1058_RS09735at 808.524 kb on + strand, within HMPREF1058_RS09735at 808.663 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C)
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805,579 + HMPREF1058_RS09745 0.22 -3.8
805,592 - HMPREF1058_RS09745 0.23 -1.5
805,610 - HMPREF1058_RS09745 0.25 -1.8
805,658 + HMPREF1058_RS09745 0.28 -1.5
805,659 - HMPREF1058_RS09745 0.28 -1.1
805,674 + HMPREF1058_RS09745 0.30 -2.0
805,697 + HMPREF1058_RS09745 0.31 -1.6
805,698 - HMPREF1058_RS09745 0.32 +1.0
805,791 - HMPREF1058_RS09745 0.39 -2.2
805,981 + HMPREF1058_RS09745 0.54 -2.5
806,000 - HMPREF1058_RS09745 0.55 -1.7
806,050 - HMPREF1058_RS09745 0.59 -2.1
806,055 - HMPREF1058_RS09745 0.60 +0.7
806,115 - HMPREF1058_RS09745 0.65 -3.2
806,163 + HMPREF1058_RS09745 0.68 -2.6
806,163 + HMPREF1058_RS09745 0.68 -2.7
806,205 + HMPREF1058_RS09745 0.72 -1.2
806,233 - HMPREF1058_RS09745 0.74 -1.7
806,233 - HMPREF1058_RS09745 0.74 -0.9
806,233 - HMPREF1058_RS09745 0.74 -3.0
806,233 - HMPREF1058_RS09745 0.74 -2.5
806,334 + HMPREF1058_RS09745 0.82 +1.0
806,364 + HMPREF1058_RS09745 0.84 -2.0
806,413 + HMPREF1058_RS09745 0.88 -0.0
806,414 - HMPREF1058_RS09745 0.88 -0.6
806,428 + HMPREF1058_RS09745 0.89 -2.8
806,429 - HMPREF1058_RS09745 0.89 -4.3
806,429 - HMPREF1058_RS09745 0.89 -2.3
806,470 + -2.5
806,471 - -0.0
806,542 - -0.8
806,550 + -3.4
806,550 + -1.0
806,550 + -1.5
806,555 - +1.0
806,555 - -1.5
806,766 - HMPREF1058_RS09740 0.17 +0.1
806,766 - HMPREF1058_RS09740 0.17 +0.9
806,783 - HMPREF1058_RS09740 0.19 +0.6
806,797 + HMPREF1058_RS09740 0.20 -0.6
806,797 + HMPREF1058_RS09740 0.20 +0.8
806,883 + HMPREF1058_RS09740 0.28 +0.7
806,949 - HMPREF1058_RS09740 0.34 +1.0
806,967 + HMPREF1058_RS09740 0.35 +0.5
806,970 - HMPREF1058_RS09740 0.35 +0.8
807,021 - HMPREF1058_RS09740 0.40 -0.4
807,046 + HMPREF1058_RS09740 0.42 -0.8
807,047 - HMPREF1058_RS09740 0.42 +0.4
807,050 + HMPREF1058_RS09740 0.43 +0.6
807,101 - HMPREF1058_RS09740 0.47 +0.6
807,101 - HMPREF1058_RS09740 0.47 +0.5
807,101 - HMPREF1058_RS09740 0.47 +2.6
807,101 - HMPREF1058_RS09740 0.47 +2.0
807,129 + HMPREF1058_RS09740 0.50 +0.4
807,176 + HMPREF1058_RS09740 0.54 +0.6
807,176 + HMPREF1058_RS09740 0.54 +0.3
807,177 - HMPREF1058_RS09740 0.54 +0.9
807,279 + HMPREF1058_RS09740 0.63 +0.4
807,279 + HMPREF1058_RS09740 0.63 -0.4
807,296 + HMPREF1058_RS09740 0.65 +0.5
807,297 - HMPREF1058_RS09740 0.65 +0.2
807,400 + HMPREF1058_RS09740 0.74 -0.1
807,401 - HMPREF1058_RS09740 0.74 +1.5
807,433 - HMPREF1058_RS09740 0.77 +1.5
807,477 + HMPREF1058_RS09740 0.81 +0.8
807,485 + HMPREF1058_RS09740 0.82 -1.5
807,493 + HMPREF1058_RS09740 0.82 +0.9
807,494 - HMPREF1058_RS09740 0.82 +1.6
807,525 + HMPREF1058_RS09740 0.85 +2.0
807,525 + HMPREF1058_RS09740 0.85 +0.3
807,595 - +0.7
807,648 - +1.8
807,651 + +1.4
807,783 - HMPREF1058_RS09735 0.12 +1.4
807,828 - HMPREF1058_RS09735 0.16 -2.0
807,830 - HMPREF1058_RS09735 0.16 -1.9
807,835 - HMPREF1058_RS09735 0.17 +0.2
807,850 + HMPREF1058_RS09735 0.18 -1.7
807,851 - HMPREF1058_RS09735 0.18 -1.2
807,927 - HMPREF1058_RS09735 0.26 -2.4
808,048 + HMPREF1058_RS09735 0.38 -2.3
808,048 + HMPREF1058_RS09735 0.38 -0.4
808,051 + HMPREF1058_RS09735 0.38 -2.3
808,085 + HMPREF1058_RS09735 0.41 -1.3
808,088 - HMPREF1058_RS09735 0.42 -0.8
808,088 - HMPREF1058_RS09735 0.42 -1.0
808,169 - HMPREF1058_RS09735 0.50 -1.2
808,249 + HMPREF1058_RS09735 0.58 +0.7
808,249 + HMPREF1058_RS09735 0.58 -1.3
808,250 - HMPREF1058_RS09735 0.58 -1.8
808,388 + HMPREF1058_RS09735 0.71 -1.6
808,388 + HMPREF1058_RS09735 0.71 -1.9
808,430 - HMPREF1058_RS09735 0.75 -3.4
808,450 + HMPREF1058_RS09735 0.77 -3.3
808,465 + HMPREF1058_RS09735 0.79 -0.4
808,465 + HMPREF1058_RS09735 0.79 -1.8
808,524 + HMPREF1058_RS09735 0.85 -0.8
808,663 - -1.4

Or see this region's nucleotide sequence