Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09720 and HMPREF1058_RS09715 are separated by 90 nucleotides HMPREF1058_RS09715 and HMPREF1058_RS09710 are separated by 22 nucleotides
HMPREF1058_RS09720: HMPREF1058_RS09720 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 810,591 to 812,396
_RS09720
HMPREF1058_RS09715: HMPREF1058_RS09715 - hypothetical protein, at 812,487 to 813,317
_RS09715
HMPREF1058_RS09710: HMPREF1058_RS09710 - acyltransferase, at 813,340 to 814,365
_RS09710
Position (kb) 812
813
814 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 811.542 kb on + strand, within HMPREF1058_RS09720 at 811.584 kb on + strand, within HMPREF1058_RS09720 at 811.699 kb on - strand, within HMPREF1058_RS09720 at 811.782 kb on + strand, within HMPREF1058_RS09720 at 811.783 kb on - strand, within HMPREF1058_RS09720 at 811.783 kb on - strand, within HMPREF1058_RS09720 at 811.793 kb on - strand, within HMPREF1058_RS09720 at 811.843 kb on + strand, within HMPREF1058_RS09720 at 811.844 kb on - strand, within HMPREF1058_RS09720 at 811.874 kb on + strand, within HMPREF1058_RS09720 at 811.881 kb on - strand, within HMPREF1058_RS09720 at 811.894 kb on + strand, within HMPREF1058_RS09720 at 811.897 kb on + strand, within HMPREF1058_RS09720 at 811.898 kb on - strand, within HMPREF1058_RS09720 at 811.898 kb on - strand, within HMPREF1058_RS09720 at 811.999 kb on + strand, within HMPREF1058_RS09720 at 811.999 kb on + strand, within HMPREF1058_RS09720 at 811.999 kb on + strand, within HMPREF1058_RS09720 at 812.000 kb on - strand, within HMPREF1058_RS09720 at 812.008 kb on - strand, within HMPREF1058_RS09720 at 812.058 kb on - strand, within HMPREF1058_RS09720 at 812.135 kb on - strand, within HMPREF1058_RS09720 at 812.138 kb on + strand, within HMPREF1058_RS09720 at 812.141 kb on + strand, within HMPREF1058_RS09720 at 812.218 kb on - strand at 812.239 kb on - strand at 812.250 kb on - strand at 812.346 kb on - strand at 812.380 kb on - strand at 812.399 kb on + strand at 812.411 kb on + strand at 812.412 kb on - strand at 812.413 kb on + strand at 812.413 kb on + strand at 812.414 kb on - strand at 812.414 kb on - strand at 812.414 kb on - strand at 812.414 kb on - strand at 812.414 kb on - strand at 812.414 kb on - strand at 812.416 kb on - strand at 812.430 kb on - strand at 812.445 kb on - strand at 812.457 kb on - strand at 812.463 kb on - strand at 812.585 kb on - strand, within HMPREF1058_RS09715 at 812.629 kb on - strand, within HMPREF1058_RS09715 at 812.647 kb on + strand, within HMPREF1058_RS09715 at 812.691 kb on + strand, within HMPREF1058_RS09715 at 812.786 kb on + strand, within HMPREF1058_RS09715 at 812.786 kb on + strand, within HMPREF1058_RS09715 at 812.860 kb on - strand, within HMPREF1058_RS09715 at 813.008 kb on + strand, within HMPREF1058_RS09715 at 813.190 kb on + strand, within HMPREF1058_RS09715 at 813.213 kb on + strand, within HMPREF1058_RS09715 at 813.214 kb on - strand, within HMPREF1058_RS09715 at 813.214 kb on - strand, within HMPREF1058_RS09715 at 813.214 kb on - strand, within HMPREF1058_RS09715 at 813.227 kb on + strand, within HMPREF1058_RS09715 at 813.227 kb on + strand, within HMPREF1058_RS09715 at 813.228 kb on - strand, within HMPREF1058_RS09715 at 813.238 kb on + strand at 813.283 kb on + strand at 813.443 kb on - strand, within HMPREF1058_RS09710 at 813.466 kb on - strand, within HMPREF1058_RS09710 at 813.500 kb on - strand, within HMPREF1058_RS09710 at 813.500 kb on - strand, within HMPREF1058_RS09710 at 813.525 kb on - strand, within HMPREF1058_RS09710 at 813.535 kb on + strand, within HMPREF1058_RS09710 at 813.567 kb on - strand, within HMPREF1058_RS09710 at 813.567 kb on - strand, within HMPREF1058_RS09710 at 813.567 kb on - strand, within HMPREF1058_RS09710 at 813.567 kb on - strand, within HMPREF1058_RS09710 at 813.667 kb on + strand, within HMPREF1058_RS09710 at 813.695 kb on - strand, within HMPREF1058_RS09710 at 813.718 kb on - strand, within HMPREF1058_RS09710 at 813.718 kb on - strand, within HMPREF1058_RS09710 at 813.735 kb on + strand, within HMPREF1058_RS09710 at 813.804 kb on - strand, within HMPREF1058_RS09710 at 813.815 kb on + strand, within HMPREF1058_RS09710 at 813.830 kb on + strand, within HMPREF1058_RS09710 at 813.849 kb on + strand, within HMPREF1058_RS09710 at 813.849 kb on + strand, within HMPREF1058_RS09710 at 814.003 kb on + strand at 814.004 kb on - strand, within HMPREF1058_RS09710 at 814.007 kb on + strand, within HMPREF1058_RS09710 at 814.007 kb on + strand, within HMPREF1058_RS09710 at 814.008 kb on - strand, within HMPREF1058_RS09710 at 814.074 kb on + strand, within HMPREF1058_RS09710 at 814.159 kb on - strand, within HMPREF1058_RS09710 at 814.185 kb on - strand, within HMPREF1058_RS09710 at 814.236 kb on + strand, within HMPREF1058_RS09710 at 814.237 kb on - strand, within HMPREF1058_RS09710 at 814.281 kb on + strand at 814.304 kb on - strand at 814.313 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 811,542 + HMPREF1058_RS09720 0.53 -3.4 811,584 + HMPREF1058_RS09720 0.55 -3.3 811,699 - HMPREF1058_RS09720 0.61 +0.1 811,782 + HMPREF1058_RS09720 0.66 -1.2 811,783 - HMPREF1058_RS09720 0.66 +0.1 811,783 - HMPREF1058_RS09720 0.66 -0.3 811,793 - HMPREF1058_RS09720 0.67 +0.8 811,843 + HMPREF1058_RS09720 0.69 -1.3 811,844 - HMPREF1058_RS09720 0.69 +0.8 811,874 + HMPREF1058_RS09720 0.71 -1.4 811,881 - HMPREF1058_RS09720 0.71 +0.6 811,894 + HMPREF1058_RS09720 0.72 -2.5 811,897 + HMPREF1058_RS09720 0.72 -0.3 811,898 - HMPREF1058_RS09720 0.72 -1.8 811,898 - HMPREF1058_RS09720 0.72 -0.3 811,999 + HMPREF1058_RS09720 0.78 -2.2 811,999 + HMPREF1058_RS09720 0.78 +2.0 811,999 + HMPREF1058_RS09720 0.78 -2.1 812,000 - HMPREF1058_RS09720 0.78 -1.5 812,008 - HMPREF1058_RS09720 0.78 -0.2 812,058 - HMPREF1058_RS09720 0.81 +0.2 812,135 - HMPREF1058_RS09720 0.85 -0.8 812,138 + HMPREF1058_RS09720 0.86 -0.2 812,141 + HMPREF1058_RS09720 0.86 -0.1 812,218 - +0.3 812,239 - -1.2 812,250 - +0.1 812,346 - -0.6 812,380 - -0.4 812,399 + -2.2 812,411 + -0.6 812,412 - -0.3 812,413 + -0.7 812,413 + -2.1 812,414 - -0.2 812,414 - -1.2 812,414 - -0.7 812,414 - -0.5 812,414 - -1.7 812,414 - -0.4 812,416 - -0.2 812,430 - +0.1 812,445 - -0.6 812,457 - +1.1 812,463 - +0.9 812,585 - HMPREF1058_RS09715 0.12 +1.0 812,629 - HMPREF1058_RS09715 0.17 +2.4 812,647 + HMPREF1058_RS09715 0.19 +0.8 812,691 + HMPREF1058_RS09715 0.25 +1.2 812,786 + HMPREF1058_RS09715 0.36 +1.0 812,786 + HMPREF1058_RS09715 0.36 +0.2 812,860 - HMPREF1058_RS09715 0.45 +2.1 813,008 + HMPREF1058_RS09715 0.63 +1.0 813,190 + HMPREF1058_RS09715 0.85 +1.2 813,213 + HMPREF1058_RS09715 0.87 +0.3 813,214 - HMPREF1058_RS09715 0.87 +0.1 813,214 - HMPREF1058_RS09715 0.87 +0.8 813,214 - HMPREF1058_RS09715 0.87 +1.5 813,227 + HMPREF1058_RS09715 0.89 +0.2 813,227 + HMPREF1058_RS09715 0.89 +0.5 813,228 - HMPREF1058_RS09715 0.89 +0.6 813,238 + +0.8 813,283 + -0.0 813,443 - HMPREF1058_RS09710 0.10 +0.4 813,466 - HMPREF1058_RS09710 0.12 -1.3 813,500 - HMPREF1058_RS09710 0.16 -0.0 813,500 - HMPREF1058_RS09710 0.16 -0.0 813,525 - HMPREF1058_RS09710 0.18 +1.8 813,535 + HMPREF1058_RS09710 0.19 +1.1 813,567 - HMPREF1058_RS09710 0.22 +0.7 813,567 - HMPREF1058_RS09710 0.22 -0.1 813,567 - HMPREF1058_RS09710 0.22 +1.0 813,567 - HMPREF1058_RS09710 0.22 +0.2 813,667 + HMPREF1058_RS09710 0.32 -0.9 813,695 - HMPREF1058_RS09710 0.35 +0.8 813,718 - HMPREF1058_RS09710 0.37 +0.1 813,718 - HMPREF1058_RS09710 0.37 +0.2 813,735 + HMPREF1058_RS09710 0.38 +0.1 813,804 - HMPREF1058_RS09710 0.45 +0.1 813,815 + HMPREF1058_RS09710 0.46 -0.0 813,830 + HMPREF1058_RS09710 0.48 +0.7 813,849 + HMPREF1058_RS09710 0.50 +3.0 813,849 + HMPREF1058_RS09710 0.50 -1.2 814,003 + +2.2 814,004 - HMPREF1058_RS09710 0.65 -0.0 814,007 + HMPREF1058_RS09710 0.65 +0.6 814,007 + HMPREF1058_RS09710 0.65 +0.9 814,008 - HMPREF1058_RS09710 0.65 +0.1 814,074 + HMPREF1058_RS09710 0.72 -0.6 814,159 - HMPREF1058_RS09710 0.80 -0.5 814,185 - HMPREF1058_RS09710 0.82 -0.4 814,236 + HMPREF1058_RS09710 0.87 +0.5 814,237 - HMPREF1058_RS09710 0.87 +0.8 814,281 + +0.5 814,304 - +0.1 814,313 - -0.2
Or see this region's nucleotide sequence