Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS09450 and HMPREF1058_RS09445 are separated by 77 nucleotides HMPREF1058_RS09445 and HMPREF1058_RS09440 are separated by 14 nucleotides HMPREF1058_RS09440 and HMPREF1058_RS09435 are separated by 98 nucleotides HMPREF1058_RS09435 and HMPREF1058_RS09430 are separated by 43 nucleotides HMPREF1058_RS09430 and HMPREF1058_RS09425 are separated by 33 nucleotides HMPREF1058_RS09425 and HMPREF1058_RS09420 are separated by 12 nucleotides HMPREF1058_RS09420 and HMPREF1058_RS09415 are separated by 51 nucleotides
HMPREF1058_RS09450: HMPREF1058_RS09450 - 30S ribosomal protein S21, at 881,699 to 881,890
_RS09450
HMPREF1058_RS09445: HMPREF1058_RS09445 - tyrosine-type recombinase/integrase, at 881,968 to 882,849
_RS09445
HMPREF1058_RS09440: HMPREF1058_RS09440 - ribosome-associated translation inhibitor RaiA, at 882,864 to 883,163
_RS09440
HMPREF1058_RS09435: HMPREF1058_RS09435 - tRNA-Thr, at 883,262 to 883,335
_RS09435
HMPREF1058_RS09430: HMPREF1058_RS09430 - tRNA-Tyr, at 883,379 to 883,461
_RS09430
HMPREF1058_RS09425: HMPREF1058_RS09425 - tRNA-Gly, at 883,495 to 883,567
_RS09425
HMPREF1058_RS09420: HMPREF1058_RS09420 - tRNA-Thr, at 883,580 to 883,651
_RS09420
HMPREF1058_RS09415: HMPREF1058_RS09415 - elongation factor Tu, at 883,703 to 884,887
_RS09415
Position (kb) 882
883
884 Strain fitness (log2 ratio) -1
0
1
2
3 at 882.029 kb on + strand at 882.033 kb on + strand at 882.388 kb on + strand, within HMPREF1058_RS09445 at 882.388 kb on + strand, within HMPREF1058_RS09445 at 882.859 kb on + strand at 882.863 kb on + strand at 882.951 kb on + strand, within HMPREF1058_RS09440 at 882.964 kb on + strand, within HMPREF1058_RS09440 at 882.964 kb on + strand, within HMPREF1058_RS09440 at 883.079 kb on + strand, within HMPREF1058_RS09440 at 883.080 kb on - strand, within HMPREF1058_RS09440 at 883.102 kb on + strand, within HMPREF1058_RS09440 at 883.103 kb on - strand, within HMPREF1058_RS09440
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 882,029 + -0.6 882,033 + -0.5 882,388 + HMPREF1058_RS09445 0.48 +1.0 882,388 + HMPREF1058_RS09445 0.48 +0.3 882,859 + +1.9 882,863 + +2.4 882,951 + HMPREF1058_RS09440 0.29 +2.1 882,964 + HMPREF1058_RS09440 0.33 +2.0 882,964 + HMPREF1058_RS09440 0.33 +1.9 883,079 + HMPREF1058_RS09440 0.72 +2.5 883,080 - HMPREF1058_RS09440 0.72 +3.4 883,102 + HMPREF1058_RS09440 0.79 +3.0 883,103 - HMPREF1058_RS09440 0.80 +2.3
Or see this region's nucleotide sequence