Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS08530 and HMPREF1058_RS08525 are separated by 73 nucleotides HMPREF1058_RS08525 and HMPREF1058_RS08520 are separated by 36 nucleotides HMPREF1058_RS08520 and HMPREF1058_RS08515 are separated by 131 nucleotides HMPREF1058_RS08515 and HMPREF1058_RS08510 are separated by 65 nucleotides
HMPREF1058_RS08530: HMPREF1058_RS08530 - glycosyltransferase, at 1,121,122 to 1,122,111
_RS08530
HMPREF1058_RS08525: HMPREF1058_RS08525 - DNA repair protein RadC, at 1,122,185 to 1,122,874
_RS08525
HMPREF1058_RS08520: HMPREF1058_RS08520 - DUF59 domain-containing protein, at 1,122,911 to 1,123,231
_RS08520
HMPREF1058_RS08515: HMPREF1058_RS08515 - UDP-2,3-diacylglucosamine diphosphatase, at 1,123,363 to 1,124,130
_RS08515
HMPREF1058_RS08510: HMPREF1058_RS08510 - acetate kinase, at 1,124,196 to 1,125,392
_RS08510
Position (kb) 1122
1123
1124 Strain fitness (log2 ratio) -1
0
1
2 at 1122.204 kb on + strand at 1122.204 kb on + strand at 1122.205 kb on - strand at 1122.290 kb on - strand, within HMPREF1058_RS08525 at 1122.361 kb on + strand, within HMPREF1058_RS08525 at 1122.361 kb on + strand, within HMPREF1058_RS08525 at 1122.364 kb on + strand, within HMPREF1058_RS08525 at 1122.365 kb on - strand, within HMPREF1058_RS08525 at 1122.365 kb on - strand, within HMPREF1058_RS08525 at 1122.421 kb on - strand, within HMPREF1058_RS08525 at 1122.436 kb on + strand, within HMPREF1058_RS08525 at 1122.500 kb on - strand, within HMPREF1058_RS08525 at 1122.500 kb on - strand, within HMPREF1058_RS08525 at 1122.533 kb on + strand, within HMPREF1058_RS08525 at 1122.607 kb on - strand, within HMPREF1058_RS08525 at 1122.624 kb on + strand, within HMPREF1058_RS08525 at 1122.625 kb on - strand, within HMPREF1058_RS08525 at 1122.646 kb on + strand, within HMPREF1058_RS08525 at 1122.646 kb on + strand, within HMPREF1058_RS08525 at 1122.647 kb on - strand, within HMPREF1058_RS08525 at 1122.782 kb on - strand, within HMPREF1058_RS08525 at 1122.802 kb on + strand, within HMPREF1058_RS08525 at 1122.802 kb on + strand, within HMPREF1058_RS08525 at 1122.802 kb on + strand, within HMPREF1058_RS08525 at 1122.803 kb on - strand, within HMPREF1058_RS08525 at 1122.803 kb on - strand, within HMPREF1058_RS08525 at 1122.805 kb on - strand, within HMPREF1058_RS08525 at 1122.824 kb on - strand at 1122.847 kb on + strand at 1122.851 kb on + strand at 1122.851 kb on + strand at 1122.910 kb on + strand at 1122.910 kb on + strand at 1122.951 kb on + strand, within HMPREF1058_RS08520 at 1122.971 kb on + strand, within HMPREF1058_RS08520 at 1122.996 kb on + strand, within HMPREF1058_RS08520 at 1123.053 kb on + strand, within HMPREF1058_RS08520 at 1123.053 kb on + strand, within HMPREF1058_RS08520 at 1123.189 kb on + strand, within HMPREF1058_RS08520 at 1123.277 kb on + strand at 1123.283 kb on + strand at 1123.283 kb on + strand at 1123.348 kb on + strand at 1124.101 kb on + strand at 1124.101 kb on + strand at 1124.141 kb on + strand at 1124.141 kb on + strand at 1124.176 kb on + strand at 1124.198 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 1,122,204 + -1.4 1,122,204 + +0.5 1,122,205 - -0.0 1,122,290 - HMPREF1058_RS08525 0.15 +1.1 1,122,361 + HMPREF1058_RS08525 0.26 -0.0 1,122,361 + HMPREF1058_RS08525 0.26 -0.8 1,122,364 + HMPREF1058_RS08525 0.26 -0.2 1,122,365 - HMPREF1058_RS08525 0.26 -0.1 1,122,365 - HMPREF1058_RS08525 0.26 -1.4 1,122,421 - HMPREF1058_RS08525 0.34 +0.7 1,122,436 + HMPREF1058_RS08525 0.36 -0.0 1,122,500 - HMPREF1058_RS08525 0.46 -0.8 1,122,500 - HMPREF1058_RS08525 0.46 +1.8 1,122,533 + HMPREF1058_RS08525 0.50 -0.4 1,122,607 - HMPREF1058_RS08525 0.61 -0.3 1,122,624 + HMPREF1058_RS08525 0.64 -0.0 1,122,625 - HMPREF1058_RS08525 0.64 -0.3 1,122,646 + HMPREF1058_RS08525 0.67 -0.5 1,122,646 + HMPREF1058_RS08525 0.67 -0.9 1,122,647 - HMPREF1058_RS08525 0.67 +1.3 1,122,782 - HMPREF1058_RS08525 0.87 +1.0 1,122,802 + HMPREF1058_RS08525 0.89 -0.2 1,122,802 + HMPREF1058_RS08525 0.89 +2.0 1,122,802 + HMPREF1058_RS08525 0.89 +0.4 1,122,803 - HMPREF1058_RS08525 0.90 +0.8 1,122,803 - HMPREF1058_RS08525 0.90 -0.4 1,122,805 - HMPREF1058_RS08525 0.90 -0.1 1,122,824 - +0.4 1,122,847 + +1.7 1,122,851 + -1.4 1,122,851 + -0.0 1,122,910 + +0.2 1,122,910 + +0.2 1,122,951 + HMPREF1058_RS08520 0.12 -0.1 1,122,971 + HMPREF1058_RS08520 0.19 +0.9 1,122,996 + HMPREF1058_RS08520 0.26 -0.1 1,123,053 + HMPREF1058_RS08520 0.44 +2.1 1,123,053 + HMPREF1058_RS08520 0.44 +0.9 1,123,189 + HMPREF1058_RS08520 0.87 +0.6 1,123,277 + +0.5 1,123,283 + -0.2 1,123,283 + +0.5 1,123,348 + -0.5 1,124,101 + -0.1 1,124,101 + -0.8 1,124,141 + +0.1 1,124,141 + +0.6 1,124,176 + +1.0 1,124,198 - -0.0
Or see this region's nucleotide sequence