Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07680 and HMPREF1058_RS07675 are separated by 185 nucleotides HMPREF1058_RS07675 and HMPREF1058_RS07670 are separated by 262 nucleotides
HMPREF1058_RS07680: HMPREF1058_RS07680 - radical SAM family heme chaperone HemW, at 161,957 to 163,087
_RS07680
HMPREF1058_RS07675: HMPREF1058_RS07675 - elongation factor G, at 163,273 to 165,432
_RS07675
HMPREF1058_RS07670: HMPREF1058_RS07670 - HAMP domain-containing histidine kinase, at 165,695 to 167,263
_RS07670
Position (kb) 163
164
165
166 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 162.289 kb on - strand, within HMPREF1058_RS07680 at 162.521 kb on - strand, within HMPREF1058_RS07680 at 162.521 kb on - strand, within HMPREF1058_RS07680 at 162.538 kb on + strand, within HMPREF1058_RS07680 at 162.569 kb on + strand, within HMPREF1058_RS07680 at 162.629 kb on - strand, within HMPREF1058_RS07680 at 162.631 kb on + strand, within HMPREF1058_RS07680 at 162.631 kb on + strand, within HMPREF1058_RS07680 at 162.632 kb on - strand, within HMPREF1058_RS07680 at 162.710 kb on + strand, within HMPREF1058_RS07680 at 162.808 kb on + strand, within HMPREF1058_RS07680 at 162.846 kb on + strand, within HMPREF1058_RS07680 at 162.846 kb on + strand, within HMPREF1058_RS07680 at 162.848 kb on + strand, within HMPREF1058_RS07680 at 162.848 kb on + strand, within HMPREF1058_RS07680 at 162.849 kb on - strand, within HMPREF1058_RS07680 at 162.859 kb on + strand, within HMPREF1058_RS07680 at 162.924 kb on - strand, within HMPREF1058_RS07680 at 162.932 kb on + strand, within HMPREF1058_RS07680 at 162.935 kb on - strand, within HMPREF1058_RS07680 at 162.993 kb on + strand at 162.993 kb on + strand at 162.993 kb on + strand at 163.043 kb on - strand at 163.066 kb on + strand at 163.067 kb on - strand at 163.071 kb on - strand at 163.071 kb on - strand at 163.075 kb on - strand at 163.075 kb on - strand at 163.075 kb on - strand at 163.128 kb on + strand at 163.128 kb on + strand at 163.128 kb on + strand at 163.129 kb on - strand at 163.202 kb on + strand at 163.230 kb on - strand at 163.266 kb on - strand at 163.280 kb on + strand at 163.280 kb on + strand at 163.283 kb on - strand at 163.300 kb on - strand at 163.375 kb on - strand at 163.379 kb on + strand at 163.379 kb on + strand at 163.380 kb on - strand at 163.444 kb on + strand at 163.478 kb on + strand at 163.499 kb on + strand, within HMPREF1058_RS07675 at 163.503 kb on + strand, within HMPREF1058_RS07675 at 163.503 kb on + strand, within HMPREF1058_RS07675 at 163.505 kb on + strand, within HMPREF1058_RS07675 at 163.505 kb on + strand, within HMPREF1058_RS07675 at 163.575 kb on + strand, within HMPREF1058_RS07675 at 163.575 kb on + strand, within HMPREF1058_RS07675 at 163.699 kb on + strand, within HMPREF1058_RS07675 at 163.779 kb on + strand, within HMPREF1058_RS07675 at 163.819 kb on + strand, within HMPREF1058_RS07675 at 163.848 kb on + strand, within HMPREF1058_RS07675 at 163.849 kb on - strand, within HMPREF1058_RS07675 at 164.023 kb on - strand, within HMPREF1058_RS07675 at 164.023 kb on - strand, within HMPREF1058_RS07675 at 164.042 kb on + strand, within HMPREF1058_RS07675 at 164.042 kb on + strand, within HMPREF1058_RS07675 at 164.043 kb on - strand, within HMPREF1058_RS07675 at 164.043 kb on - strand, within HMPREF1058_RS07675 at 164.091 kb on + strand, within HMPREF1058_RS07675 at 164.134 kb on - strand, within HMPREF1058_RS07675 at 164.173 kb on - strand, within HMPREF1058_RS07675 at 164.182 kb on + strand, within HMPREF1058_RS07675 at 164.377 kb on - strand, within HMPREF1058_RS07675 at 164.377 kb on - strand, within HMPREF1058_RS07675 at 164.396 kb on + strand, within HMPREF1058_RS07675 at 164.410 kb on - strand, within HMPREF1058_RS07675 at 164.451 kb on + strand, within HMPREF1058_RS07675 at 164.453 kb on - strand, within HMPREF1058_RS07675 at 164.461 kb on - strand, within HMPREF1058_RS07675 at 164.466 kb on + strand, within HMPREF1058_RS07675 at 164.507 kb on + strand, within HMPREF1058_RS07675 at 164.508 kb on - strand, within HMPREF1058_RS07675 at 164.523 kb on + strand, within HMPREF1058_RS07675 at 164.524 kb on - strand, within HMPREF1058_RS07675 at 164.592 kb on + strand, within HMPREF1058_RS07675 at 164.592 kb on + strand, within HMPREF1058_RS07675 at 164.592 kb on + strand, within HMPREF1058_RS07675 at 164.593 kb on - strand, within HMPREF1058_RS07675 at 164.683 kb on - strand, within HMPREF1058_RS07675 at 164.683 kb on - strand, within HMPREF1058_RS07675 at 164.798 kb on - strand, within HMPREF1058_RS07675 at 164.798 kb on - strand, within HMPREF1058_RS07675 at 164.824 kb on + strand, within HMPREF1058_RS07675 at 164.826 kb on + strand, within HMPREF1058_RS07675 at 164.876 kb on + strand, within HMPREF1058_RS07675 at 164.877 kb on - strand, within HMPREF1058_RS07675 at 165.021 kb on - strand, within HMPREF1058_RS07675 at 165.114 kb on + strand, within HMPREF1058_RS07675 at 165.115 kb on - strand, within HMPREF1058_RS07675 at 165.115 kb on - strand, within HMPREF1058_RS07675 at 165.624 kb on + strand at 165.720 kb on + strand at 165.758 kb on + strand at 165.871 kb on + strand, within HMPREF1058_RS07670 at 165.979 kb on + strand, within HMPREF1058_RS07670 at 166.198 kb on + strand, within HMPREF1058_RS07670 at 166.276 kb on + strand, within HMPREF1058_RS07670
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 162,289 - HMPREF1058_RS07680 0.29 -0.7 162,521 - HMPREF1058_RS07680 0.50 -0.1 162,521 - HMPREF1058_RS07680 0.50 +1.0 162,538 + HMPREF1058_RS07680 0.51 +1.6 162,569 + HMPREF1058_RS07680 0.54 +0.1 162,629 - HMPREF1058_RS07680 0.59 -0.3 162,631 + HMPREF1058_RS07680 0.60 -0.1 162,631 + HMPREF1058_RS07680 0.60 +0.7 162,632 - HMPREF1058_RS07680 0.60 -0.6 162,710 + HMPREF1058_RS07680 0.67 -0.3 162,808 + HMPREF1058_RS07680 0.75 -0.8 162,846 + HMPREF1058_RS07680 0.79 +0.3 162,846 + HMPREF1058_RS07680 0.79 -2.4 162,848 + HMPREF1058_RS07680 0.79 +1.0 162,848 + HMPREF1058_RS07680 0.79 -1.8 162,849 - HMPREF1058_RS07680 0.79 +1.3 162,859 + HMPREF1058_RS07680 0.80 -0.5 162,924 - HMPREF1058_RS07680 0.85 -0.1 162,932 + HMPREF1058_RS07680 0.86 +0.2 162,935 - HMPREF1058_RS07680 0.86 +0.1 162,993 + -0.8 162,993 + -0.7 162,993 + +1.4 163,043 - -0.8 163,066 + -2.8 163,067 - +1.4 163,071 - -0.2 163,071 - +0.1 163,075 - -1.9 163,075 - -0.3 163,075 - +0.8 163,128 + +0.2 163,128 + +2.0 163,128 + -0.2 163,129 - +0.1 163,202 + -0.1 163,230 - +3.4 163,266 - +4.4 163,280 + +3.4 163,280 + +3.4 163,283 - +3.4 163,300 - +2.2 163,375 - +2.5 163,379 + +2.2 163,379 + +4.2 163,380 - +0.9 163,444 + +3.7 163,478 + +2.9 163,499 + HMPREF1058_RS07675 0.10 +2.0 163,503 + HMPREF1058_RS07675 0.11 +3.0 163,503 + HMPREF1058_RS07675 0.11 +2.6 163,505 + HMPREF1058_RS07675 0.11 +2.9 163,505 + HMPREF1058_RS07675 0.11 +2.5 163,575 + HMPREF1058_RS07675 0.14 +3.9 163,575 + HMPREF1058_RS07675 0.14 +3.0 163,699 + HMPREF1058_RS07675 0.20 +2.1 163,779 + HMPREF1058_RS07675 0.23 +2.9 163,819 + HMPREF1058_RS07675 0.25 +3.5 163,848 + HMPREF1058_RS07675 0.27 +2.4 163,849 - HMPREF1058_RS07675 0.27 +2.9 164,023 - HMPREF1058_RS07675 0.35 +3.5 164,023 - HMPREF1058_RS07675 0.35 +2.7 164,042 + HMPREF1058_RS07675 0.36 +4.4 164,042 + HMPREF1058_RS07675 0.36 +3.9 164,043 - HMPREF1058_RS07675 0.36 +2.7 164,043 - HMPREF1058_RS07675 0.36 +2.2 164,091 + HMPREF1058_RS07675 0.38 +2.8 164,134 - HMPREF1058_RS07675 0.40 +2.6 164,173 - HMPREF1058_RS07675 0.42 +4.6 164,182 + HMPREF1058_RS07675 0.42 +3.6 164,377 - HMPREF1058_RS07675 0.51 +3.8 164,377 - HMPREF1058_RS07675 0.51 +1.4 164,396 + HMPREF1058_RS07675 0.52 +3.7 164,410 - HMPREF1058_RS07675 0.53 +2.4 164,451 + HMPREF1058_RS07675 0.55 +4.2 164,453 - HMPREF1058_RS07675 0.55 +0.0 164,461 - HMPREF1058_RS07675 0.55 +2.9 164,466 + HMPREF1058_RS07675 0.55 +2.8 164,507 + HMPREF1058_RS07675 0.57 +4.5 164,508 - HMPREF1058_RS07675 0.57 +2.9 164,523 + HMPREF1058_RS07675 0.58 +3.0 164,524 - HMPREF1058_RS07675 0.58 +3.3 164,592 + HMPREF1058_RS07675 0.61 +3.1 164,592 + HMPREF1058_RS07675 0.61 +3.2 164,592 + HMPREF1058_RS07675 0.61 +3.6 164,593 - HMPREF1058_RS07675 0.61 +3.5 164,683 - HMPREF1058_RS07675 0.65 +1.0 164,683 - HMPREF1058_RS07675 0.65 +2.4 164,798 - HMPREF1058_RS07675 0.71 +3.7 164,798 - HMPREF1058_RS07675 0.71 +2.6 164,824 + HMPREF1058_RS07675 0.72 +4.2 164,826 + HMPREF1058_RS07675 0.72 +3.4 164,876 + HMPREF1058_RS07675 0.74 +3.5 164,877 - HMPREF1058_RS07675 0.74 +2.1 165,021 - HMPREF1058_RS07675 0.81 +2.8 165,114 + HMPREF1058_RS07675 0.85 +4.5 165,115 - HMPREF1058_RS07675 0.85 +2.8 165,115 - HMPREF1058_RS07675 0.85 +3.0 165,624 + -0.0 165,720 + +2.0 165,758 + +0.2 165,871 + HMPREF1058_RS07670 0.11 +1.7 165,979 + HMPREF1058_RS07670 0.18 +0.7 166,198 + HMPREF1058_RS07670 0.32 +0.4 166,276 + HMPREF1058_RS07670 0.37 +2.0
Or see this region's nucleotide sequence