Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07475 and HMPREF1058_RS07470 overlap by 17 nucleotides HMPREF1058_RS07470 and HMPREF1058_RS07465 overlap by 32 nucleotides HMPREF1058_RS07465 and HMPREF1058_RS07460 are separated by 27 nucleotides
HMPREF1058_RS07475: HMPREF1058_RS07475 - ABC transporter ATP-binding protein, at 216,105 to 217,757
_RS07475
HMPREF1058_RS07470: HMPREF1058_RS07470 - hypothetical protein, at 217,741 to 218,655
_RS07470
HMPREF1058_RS07465: HMPREF1058_RS07465 - S26 family signal peptidase, at 218,624 to 219,091
_RS07465
HMPREF1058_RS07460: HMPREF1058_RS07460 - DUF1343 domain-containing protein, at 219,119 to 220,279
_RS07460
Position (kb) 218
219
220 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 217.727 kb on - strand at 217.871 kb on + strand, within HMPREF1058_RS07470 at 217.872 kb on - strand, within HMPREF1058_RS07470 at 217.874 kb on - strand, within HMPREF1058_RS07470 at 217.980 kb on + strand, within HMPREF1058_RS07470 at 218.084 kb on + strand, within HMPREF1058_RS07470 at 218.191 kb on + strand, within HMPREF1058_RS07470 at 218.192 kb on - strand, within HMPREF1058_RS07470 at 218.280 kb on + strand, within HMPREF1058_RS07470 at 218.314 kb on + strand, within HMPREF1058_RS07470 at 218.336 kb on + strand, within HMPREF1058_RS07470 at 218.337 kb on - strand, within HMPREF1058_RS07470 at 218.337 kb on - strand, within HMPREF1058_RS07470 at 218.337 kb on - strand, within HMPREF1058_RS07470 at 218.371 kb on + strand at 218.372 kb on - strand, within HMPREF1058_RS07470 at 218.374 kb on - strand, within HMPREF1058_RS07470 at 218.426 kb on - strand, within HMPREF1058_RS07470 at 218.462 kb on - strand, within HMPREF1058_RS07470 at 218.617 kb on - strand at 218.621 kb on + strand at 218.623 kb on + strand at 218.839 kb on - strand, within HMPREF1058_RS07465 at 218.839 kb on - strand, within HMPREF1058_RS07465 at 218.952 kb on + strand, within HMPREF1058_RS07465 at 219.064 kb on + strand at 219.064 kb on + strand at 219.118 kb on - strand at 219.120 kb on + strand at 219.313 kb on - strand, within HMPREF1058_RS07460 at 219.315 kb on + strand, within HMPREF1058_RS07460 at 219.394 kb on + strand, within HMPREF1058_RS07460 at 219.476 kb on + strand, within HMPREF1058_RS07460 at 219.497 kb on - strand, within HMPREF1058_RS07460 at 219.547 kb on - strand, within HMPREF1058_RS07460 at 219.855 kb on - strand, within HMPREF1058_RS07460 at 219.858 kb on + strand, within HMPREF1058_RS07460 at 219.876 kb on + strand, within HMPREF1058_RS07460 at 219.876 kb on + strand, within HMPREF1058_RS07460 at 219.876 kb on + strand, within HMPREF1058_RS07460 at 219.876 kb on + strand, within HMPREF1058_RS07460 at 219.877 kb on - strand, within HMPREF1058_RS07460 at 219.877 kb on - strand, within HMPREF1058_RS07460 at 219.882 kb on + strand, within HMPREF1058_RS07460 at 219.896 kb on + strand, within HMPREF1058_RS07460 at 219.927 kb on - strand, within HMPREF1058_RS07460 at 219.950 kb on - strand, within HMPREF1058_RS07460 at 219.969 kb on + strand, within HMPREF1058_RS07460 at 220.082 kb on + strand, within HMPREF1058_RS07460 at 220.083 kb on - strand, within HMPREF1058_RS07460 at 220.083 kb on - strand, within HMPREF1058_RS07460 at 220.083 kb on - strand, within HMPREF1058_RS07460
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 217,727 - +0.7 217,871 + HMPREF1058_RS07470 0.14 +0.7 217,872 - HMPREF1058_RS07470 0.14 +0.4 217,874 - HMPREF1058_RS07470 0.15 +1.4 217,980 + HMPREF1058_RS07470 0.26 -0.6 218,084 + HMPREF1058_RS07470 0.37 -2.1 218,191 + HMPREF1058_RS07470 0.49 +0.9 218,192 - HMPREF1058_RS07470 0.49 -0.4 218,280 + HMPREF1058_RS07470 0.59 +1.5 218,314 + HMPREF1058_RS07470 0.63 -0.5 218,336 + HMPREF1058_RS07470 0.65 -1.1 218,337 - HMPREF1058_RS07470 0.65 +2.0 218,337 - HMPREF1058_RS07470 0.65 +1.4 218,337 - HMPREF1058_RS07470 0.65 +1.3 218,371 + +3.0 218,372 - HMPREF1058_RS07470 0.69 +0.8 218,374 - HMPREF1058_RS07470 0.69 +0.4 218,426 - HMPREF1058_RS07470 0.75 -0.5 218,462 - HMPREF1058_RS07470 0.79 +0.6 218,617 - -1.3 218,621 + +0.4 218,623 + -0.7 218,839 - HMPREF1058_RS07465 0.46 +2.2 218,839 - HMPREF1058_RS07465 0.46 +0.2 218,952 + HMPREF1058_RS07465 0.70 -0.1 219,064 + +0.3 219,064 + +0.3 219,118 - +0.0 219,120 + -0.2 219,313 - HMPREF1058_RS07460 0.17 -0.1 219,315 + HMPREF1058_RS07460 0.17 -1.4 219,394 + HMPREF1058_RS07460 0.24 -2.7 219,476 + HMPREF1058_RS07460 0.31 -0.3 219,497 - HMPREF1058_RS07460 0.33 +0.5 219,547 - HMPREF1058_RS07460 0.37 -0.9 219,855 - HMPREF1058_RS07460 0.63 +1.0 219,858 + HMPREF1058_RS07460 0.64 -0.4 219,876 + HMPREF1058_RS07460 0.65 -1.1 219,876 + HMPREF1058_RS07460 0.65 +1.6 219,876 + HMPREF1058_RS07460 0.65 -0.0 219,876 + HMPREF1058_RS07460 0.65 -0.6 219,877 - HMPREF1058_RS07460 0.65 +0.5 219,877 - HMPREF1058_RS07460 0.65 -1.2 219,882 + HMPREF1058_RS07460 0.66 -1.0 219,896 + HMPREF1058_RS07460 0.67 +0.2 219,927 - HMPREF1058_RS07460 0.70 -0.4 219,950 - HMPREF1058_RS07460 0.72 -0.8 219,969 + HMPREF1058_RS07460 0.73 -1.2 220,082 + HMPREF1058_RS07460 0.83 +2.4 220,083 - HMPREF1058_RS07460 0.83 +0.3 220,083 - HMPREF1058_RS07460 0.83 -1.5 220,083 - HMPREF1058_RS07460 0.83 +0.7
Or see this region's nucleotide sequence