Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07255 and HMPREF1058_RS07250 are separated by 6 nucleotides HMPREF1058_RS07250 and HMPREF1058_RS07245 are separated by 171 nucleotides HMPREF1058_RS07245 and HMPREF1058_RS07240 are separated by 238 nucleotides HMPREF1058_RS07240 and HMPREF1058_RS07235 are separated by 179 nucleotides
HMPREF1058_RS07255: HMPREF1058_RS07255 - TlpA family protein disulfide reductase, at 278,375 to 278,917
_RS07255
HMPREF1058_RS07250: HMPREF1058_RS07250 - N-acetylmuramoyl-L-alanine amidase, at 278,924 to 279,730
_RS07250
HMPREF1058_RS07245: HMPREF1058_RS07245 - Rne/Rng family ribonuclease, at 279,902 to 281,476
_RS07245
HMPREF1058_RS07240: HMPREF1058_RS07240 - integration host factor subunit beta, at 281,715 to 281,990
_RS07240
HMPREF1058_RS07235: HMPREF1058_RS07235 - A/G-specific adenine glycosylase, at 282,170 to 283,228
_RS07235
Position (kb) 279
280
281
282 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 278.941 kb on - strand at 278.956 kb on - strand at 279.029 kb on + strand, within HMPREF1058_RS07250 at 279.029 kb on + strand, within HMPREF1058_RS07250 at 279.035 kb on - strand, within HMPREF1058_RS07250 at 279.035 kb on - strand, within HMPREF1058_RS07250 at 279.035 kb on - strand at 279.047 kb on - strand, within HMPREF1058_RS07250 at 279.162 kb on - strand, within HMPREF1058_RS07250 at 279.169 kb on + strand, within HMPREF1058_RS07250 at 279.218 kb on - strand, within HMPREF1058_RS07250 at 279.221 kb on - strand, within HMPREF1058_RS07250 at 279.221 kb on - strand, within HMPREF1058_RS07250 at 279.301 kb on + strand, within HMPREF1058_RS07250 at 279.397 kb on + strand, within HMPREF1058_RS07250 at 279.398 kb on - strand, within HMPREF1058_RS07250 at 279.398 kb on - strand, within HMPREF1058_RS07250 at 279.448 kb on + strand, within HMPREF1058_RS07250 at 279.448 kb on + strand, within HMPREF1058_RS07250 at 279.499 kb on + strand, within HMPREF1058_RS07250 at 279.516 kb on - strand, within HMPREF1058_RS07250 at 279.576 kb on + strand, within HMPREF1058_RS07250 at 279.577 kb on - strand, within HMPREF1058_RS07250 at 279.587 kb on - strand, within HMPREF1058_RS07250 at 279.714 kb on - strand at 279.733 kb on + strand at 279.786 kb on + strand at 279.846 kb on + strand at 279.849 kb on + strand at 280.074 kb on + strand, within HMPREF1058_RS07245 at 280.075 kb on - strand, within HMPREF1058_RS07245 at 280.075 kb on - strand, within HMPREF1058_RS07245 at 280.086 kb on + strand, within HMPREF1058_RS07245 at 280.087 kb on - strand, within HMPREF1058_RS07245 at 280.094 kb on - strand, within HMPREF1058_RS07245 at 280.104 kb on - strand, within HMPREF1058_RS07245 at 281.561 kb on + strand at 281.680 kb on + strand at 281.701 kb on - strand at 281.717 kb on - strand at 281.735 kb on - strand at 281.736 kb on - strand at 282.024 kb on - strand at 282.144 kb on - strand at 282.144 kb on - strand at 282.279 kb on + strand, within HMPREF1058_RS07235 at 282.280 kb on - strand, within HMPREF1058_RS07235 at 282.311 kb on + strand, within HMPREF1058_RS07235 at 282.314 kb on + strand, within HMPREF1058_RS07235 at 282.314 kb on + strand, within HMPREF1058_RS07235 at 282.315 kb on - strand, within HMPREF1058_RS07235 at 282.315 kb on - strand, within HMPREF1058_RS07235 at 282.476 kb on + strand, within HMPREF1058_RS07235 at 282.476 kb on + strand, within HMPREF1058_RS07235
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 278,941 - -0.8 278,956 - -1.3 279,029 + HMPREF1058_RS07250 0.13 +0.1 279,029 + HMPREF1058_RS07250 0.13 +0.1 279,035 - HMPREF1058_RS07250 0.14 -0.8 279,035 - HMPREF1058_RS07250 0.14 +0.9 279,035 - -1.2 279,047 - HMPREF1058_RS07250 0.15 +0.7 279,162 - HMPREF1058_RS07250 0.29 -0.8 279,169 + HMPREF1058_RS07250 0.30 +0.3 279,218 - HMPREF1058_RS07250 0.36 +1.2 279,221 - HMPREF1058_RS07250 0.37 +0.7 279,221 - HMPREF1058_RS07250 0.37 +0.7 279,301 + HMPREF1058_RS07250 0.47 -0.2 279,397 + HMPREF1058_RS07250 0.59 +0.1 279,398 - HMPREF1058_RS07250 0.59 +0.6 279,398 - HMPREF1058_RS07250 0.59 -0.2 279,448 + HMPREF1058_RS07250 0.65 +0.4 279,448 + HMPREF1058_RS07250 0.65 +1.3 279,499 + HMPREF1058_RS07250 0.71 +1.4 279,516 - HMPREF1058_RS07250 0.73 -0.7 279,576 + HMPREF1058_RS07250 0.81 -0.2 279,577 - HMPREF1058_RS07250 0.81 -0.9 279,587 - HMPREF1058_RS07250 0.82 +0.3 279,714 - +1.2 279,733 + -1.3 279,786 + -0.3 279,846 + +0.4 279,849 + +0.7 280,074 + HMPREF1058_RS07245 0.11 +2.1 280,075 - HMPREF1058_RS07245 0.11 +0.9 280,075 - HMPREF1058_RS07245 0.11 +0.9 280,086 + HMPREF1058_RS07245 0.12 +0.4 280,087 - HMPREF1058_RS07245 0.12 +0.9 280,094 - HMPREF1058_RS07245 0.12 -0.3 280,104 - HMPREF1058_RS07245 0.13 +1.3 281,561 + +1.9 281,680 + -0.4 281,701 - -0.3 281,717 - -0.2 281,735 - +0.5 281,736 - -1.0 282,024 - -1.8 282,144 - -2.8 282,144 - -0.3 282,279 + HMPREF1058_RS07235 0.10 +0.0 282,280 - HMPREF1058_RS07235 0.10 -0.1 282,311 + HMPREF1058_RS07235 0.13 +0.5 282,314 + HMPREF1058_RS07235 0.14 -0.6 282,314 + HMPREF1058_RS07235 0.14 -1.6 282,315 - HMPREF1058_RS07235 0.14 +0.8 282,315 - HMPREF1058_RS07235 0.14 +0.5 282,476 + HMPREF1058_RS07235 0.29 +1.0 282,476 + HMPREF1058_RS07235 0.29 +0.2
Or see this region's nucleotide sequence