Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS07160 and HMPREF1058_RS07155 are separated by 10 nucleotides HMPREF1058_RS07155 and HMPREF1058_RS07150 are separated by 88 nucleotides
HMPREF1058_RS07160: HMPREF1058_RS07160 - DUF308 domain-containing protein, at 297,715 to 298,281
_RS07160
HMPREF1058_RS07155: HMPREF1058_RS07155 - DUF4891 domain-containing protein, at 298,292 to 298,690
_RS07155
HMPREF1058_RS07150: HMPREF1058_RS07150 - S9 family peptidase, at 298,779 to 301,229
_RS07150
Position (kb) 298
299 Strain fitness (log2 ratio) -1
0
1
2 at 297.307 kb on - strand at 297.327 kb on - strand at 297.352 kb on + strand at 297.353 kb on - strand at 297.454 kb on + strand at 297.509 kb on + strand at 297.510 kb on - strand at 297.528 kb on + strand at 297.529 kb on - strand at 297.544 kb on - strand at 297.550 kb on + strand at 297.560 kb on + strand at 297.561 kb on - strand at 297.566 kb on + strand at 297.639 kb on + strand at 297.679 kb on - strand at 297.681 kb on - strand at 297.735 kb on + strand at 297.747 kb on + strand at 297.816 kb on + strand, within HMPREF1058_RS07160 at 297.817 kb on - strand, within HMPREF1058_RS07160 at 297.979 kb on + strand, within HMPREF1058_RS07160 at 297.980 kb on - strand, within HMPREF1058_RS07160 at 297.980 kb on - strand, within HMPREF1058_RS07160 at 297.986 kb on + strand, within HMPREF1058_RS07160 at 298.031 kb on + strand, within HMPREF1058_RS07160 at 298.104 kb on + strand, within HMPREF1058_RS07160 at 298.113 kb on - strand at 298.119 kb on + strand, within HMPREF1058_RS07160 at 298.120 kb on - strand, within HMPREF1058_RS07160 at 298.175 kb on + strand, within HMPREF1058_RS07160 at 298.175 kb on + strand, within HMPREF1058_RS07160 at 298.263 kb on - strand at 298.332 kb on + strand, within HMPREF1058_RS07155 at 298.344 kb on + strand, within HMPREF1058_RS07155 at 298.345 kb on - strand, within HMPREF1058_RS07155 at 298.395 kb on - strand, within HMPREF1058_RS07155 at 298.429 kb on + strand, within HMPREF1058_RS07155 at 298.429 kb on + strand, within HMPREF1058_RS07155 at 298.430 kb on - strand, within HMPREF1058_RS07155 at 298.448 kb on - strand, within HMPREF1058_RS07155 at 298.459 kb on + strand, within HMPREF1058_RS07155 at 298.459 kb on + strand, within HMPREF1058_RS07155 at 298.460 kb on - strand, within HMPREF1058_RS07155 at 298.575 kb on - strand, within HMPREF1058_RS07155 at 298.618 kb on - strand, within HMPREF1058_RS07155 at 298.668 kb on - strand at 298.688 kb on + strand at 298.688 kb on + strand at 298.689 kb on - strand at 298.691 kb on + strand at 298.699 kb on - strand at 298.779 kb on - strand at 298.853 kb on + strand at 298.875 kb on + strand at 298.883 kb on - strand at 298.972 kb on + strand at 298.973 kb on - strand at 298.991 kb on - strand at 299.118 kb on + strand, within HMPREF1058_RS07150 at 299.122 kb on + strand, within HMPREF1058_RS07150 at 299.180 kb on - strand, within HMPREF1058_RS07150 at 299.186 kb on + strand, within HMPREF1058_RS07150 at 299.186 kb on + strand, within HMPREF1058_RS07150 at 299.284 kb on + strand, within HMPREF1058_RS07150 at 299.285 kb on - strand, within HMPREF1058_RS07150 at 299.352 kb on + strand, within HMPREF1058_RS07150 at 299.353 kb on - strand, within HMPREF1058_RS07150 at 299.372 kb on + strand, within HMPREF1058_RS07150 at 299.379 kb on + strand, within HMPREF1058_RS07150 at 299.379 kb on + strand, within HMPREF1058_RS07150 at 299.380 kb on - strand at 299.383 kb on + strand, within HMPREF1058_RS07150 at 299.403 kb on - strand, within HMPREF1058_RS07150 at 299.459 kb on + strand, within HMPREF1058_RS07150 at 299.490 kb on + strand, within HMPREF1058_RS07150 at 299.490 kb on + strand, within HMPREF1058_RS07150 at 299.491 kb on - strand, within HMPREF1058_RS07150
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 297,307 - +0.9 297,327 - -0.9 297,352 + -0.6 297,353 - -0.6 297,454 + -0.2 297,509 + -1.0 297,510 - +0.9 297,528 + -0.3 297,529 - -0.1 297,544 - +1.5 297,550 + +1.2 297,560 + -0.1 297,561 - +1.0 297,566 + -0.5 297,639 + -0.1 297,679 - -0.8 297,681 - +0.0 297,735 + -0.3 297,747 + -0.5 297,816 + HMPREF1058_RS07160 0.18 +0.2 297,817 - HMPREF1058_RS07160 0.18 +0.8 297,979 + HMPREF1058_RS07160 0.47 +1.8 297,980 - HMPREF1058_RS07160 0.47 +0.8 297,980 - HMPREF1058_RS07160 0.47 -0.5 297,986 + HMPREF1058_RS07160 0.48 +1.1 298,031 + HMPREF1058_RS07160 0.56 -0.4 298,104 + HMPREF1058_RS07160 0.69 -1.1 298,113 - +1.6 298,119 + HMPREF1058_RS07160 0.71 +0.7 298,120 - HMPREF1058_RS07160 0.71 -0.4 298,175 + HMPREF1058_RS07160 0.81 -0.2 298,175 + HMPREF1058_RS07160 0.81 -0.7 298,263 - -1.7 298,332 + HMPREF1058_RS07155 0.10 -0.2 298,344 + HMPREF1058_RS07155 0.13 +0.0 298,345 - HMPREF1058_RS07155 0.13 -0.7 298,395 - HMPREF1058_RS07155 0.26 +0.9 298,429 + HMPREF1058_RS07155 0.34 -0.1 298,429 + HMPREF1058_RS07155 0.34 +0.5 298,430 - HMPREF1058_RS07155 0.35 +0.8 298,448 - HMPREF1058_RS07155 0.39 +0.6 298,459 + HMPREF1058_RS07155 0.42 +2.2 298,459 + HMPREF1058_RS07155 0.42 -0.3 298,460 - HMPREF1058_RS07155 0.42 +1.7 298,575 - HMPREF1058_RS07155 0.71 +0.9 298,618 - HMPREF1058_RS07155 0.82 -0.2 298,668 - +1.3 298,688 + +0.7 298,688 + -0.5 298,689 - +0.6 298,691 + -1.1 298,699 - +0.6 298,779 - -0.6 298,853 + -0.1 298,875 + -0.4 298,883 - +0.5 298,972 + -0.5 298,973 - +0.7 298,991 - +0.5 299,118 + HMPREF1058_RS07150 0.14 +2.0 299,122 + HMPREF1058_RS07150 0.14 -0.1 299,180 - HMPREF1058_RS07150 0.16 -0.4 299,186 + HMPREF1058_RS07150 0.17 +0.5 299,186 + HMPREF1058_RS07150 0.17 -1.0 299,284 + HMPREF1058_RS07150 0.21 -0.9 299,285 - HMPREF1058_RS07150 0.21 -0.1 299,352 + HMPREF1058_RS07150 0.23 +1.2 299,353 - HMPREF1058_RS07150 0.23 +1.0 299,372 + HMPREF1058_RS07150 0.24 +0.1 299,379 + HMPREF1058_RS07150 0.24 +0.0 299,379 + HMPREF1058_RS07150 0.24 -0.2 299,380 - +0.0 299,383 + HMPREF1058_RS07150 0.25 -0.3 299,403 - HMPREF1058_RS07150 0.25 -1.0 299,459 + HMPREF1058_RS07150 0.28 +1.2 299,490 + HMPREF1058_RS07150 0.29 +0.3 299,490 + HMPREF1058_RS07150 0.29 +0.6 299,491 - HMPREF1058_RS07150 0.29 +1.2
Or see this region's nucleotide sequence