Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS07130

Experiment: Xylan from corn core 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS07135 and HMPREF1058_RS07130 are separated by 6 nucleotidesHMPREF1058_RS07130 and HMPREF1058_RS07125 are separated by 163 nucleotides HMPREF1058_RS07135: HMPREF1058_RS07135 - hypothetical protein, at 303,683 to 305,848 _RS07135 HMPREF1058_RS07130: HMPREF1058_RS07130 - helix-turn-helix transcriptional regulator, at 305,855 to 306,700 _RS07130 HMPREF1058_RS07125: HMPREF1058_RS07125 - efflux RND transporter periplasmic adaptor subunit, at 306,864 to 307,919 _RS07125 Position (kb) 305 306 307Strain fitness (log2 ratio) -2 -1 0 1 2at 304.978 kb on - strand, within HMPREF1058_RS07135at 305.016 kb on - strand, within HMPREF1058_RS07135at 305.025 kb on + strand, within HMPREF1058_RS07135at 305.037 kb on - strand, within HMPREF1058_RS07135at 305.037 kb on - strand, within HMPREF1058_RS07135at 305.044 kb on - strand, within HMPREF1058_RS07135at 305.053 kb on + strand, within HMPREF1058_RS07135at 305.053 kb on + strand, within HMPREF1058_RS07135at 305.119 kb on + strand, within HMPREF1058_RS07135at 305.119 kb on + strand, within HMPREF1058_RS07135at 305.119 kb on + strand, within HMPREF1058_RS07135at 305.122 kb on + strand, within HMPREF1058_RS07135at 305.277 kb on + strand, within HMPREF1058_RS07135at 305.277 kb on + strand, within HMPREF1058_RS07135at 305.277 kb on + strand, within HMPREF1058_RS07135at 305.280 kb on + strand, within HMPREF1058_RS07135at 305.281 kb on - strand, within HMPREF1058_RS07135at 305.282 kb on + strand, within HMPREF1058_RS07135at 305.283 kb on - strand, within HMPREF1058_RS07135at 305.286 kb on + strand, within HMPREF1058_RS07135at 305.286 kb on + strand, within HMPREF1058_RS07135at 305.287 kb on - strand, within HMPREF1058_RS07135at 305.291 kb on + strand, within HMPREF1058_RS07135at 305.381 kb on + strand, within HMPREF1058_RS07135at 305.397 kb on + strand, within HMPREF1058_RS07135at 305.448 kb on - strand, within HMPREF1058_RS07135at 305.488 kb on + strand, within HMPREF1058_RS07135at 305.489 kb on - strand, within HMPREF1058_RS07135at 305.509 kb on + strand, within HMPREF1058_RS07135at 305.509 kb on + strand, within HMPREF1058_RS07135at 305.512 kb on + strand, within HMPREF1058_RS07135at 305.528 kb on - strand, within HMPREF1058_RS07135at 305.578 kb on - strand, within HMPREF1058_RS07135at 305.578 kb on - strand, within HMPREF1058_RS07135at 305.578 kb on - strand, within HMPREF1058_RS07135at 305.578 kb on - strand, within HMPREF1058_RS07135at 305.579 kb on + strand, within HMPREF1058_RS07135at 305.593 kb on - strand, within HMPREF1058_RS07135at 305.623 kb on - strand, within HMPREF1058_RS07135at 305.672 kb on + strandat 305.672 kb on + strandat 305.688 kb on + strandat 305.688 kb on + strandat 305.708 kb on - strandat 305.708 kb on - strandat 305.759 kb on - strandat 305.759 kb on - strandat 305.856 kb on + strandat 305.856 kb on + strandat 305.857 kb on - strandat 305.894 kb on - strandat 305.902 kb on + strandat 306.002 kb on + strand, within HMPREF1058_RS07130at 306.082 kb on + strand, within HMPREF1058_RS07130at 306.083 kb on - strand, within HMPREF1058_RS07130at 306.125 kb on - strand, within HMPREF1058_RS07130at 306.142 kb on - strand, within HMPREF1058_RS07130at 306.185 kb on - strand, within HMPREF1058_RS07130at 306.185 kb on - strand, within HMPREF1058_RS07130at 306.194 kb on + strand, within HMPREF1058_RS07130at 306.234 kb on - strand, within HMPREF1058_RS07130at 306.283 kb on + strand, within HMPREF1058_RS07130at 306.312 kb on + strand, within HMPREF1058_RS07130at 306.313 kb on - strand, within HMPREF1058_RS07130at 306.408 kb on - strand, within HMPREF1058_RS07130at 306.479 kb on + strand, within HMPREF1058_RS07130at 306.479 kb on + strand, within HMPREF1058_RS07130at 306.479 kb on + strand, within HMPREF1058_RS07130at 306.613 kb on - strand, within HMPREF1058_RS07130at 306.670 kb on + strandat 306.674 kb on + strandat 306.675 kb on - strandat 306.675 kb on - strandat 306.693 kb on + strandat 306.735 kb on + strandat 306.756 kb on - strandat 306.782 kb on + strandat 306.785 kb on + strandat 306.786 kb on - strandat 306.844 kb on + strandat 306.864 kb on - strandat 306.888 kb on - strandat 307.047 kb on - strand, within HMPREF1058_RS07125at 307.266 kb on - strand, within HMPREF1058_RS07125at 307.379 kb on - strand, within HMPREF1058_RS07125at 307.455 kb on - strand, within HMPREF1058_RS07125at 307.482 kb on - strand, within HMPREF1058_RS07125at 307.503 kb on + strand, within HMPREF1058_RS07125at 307.531 kb on + strand, within HMPREF1058_RS07125at 307.540 kb on - strand, within HMPREF1058_RS07125at 307.543 kb on + strand, within HMPREF1058_RS07125at 307.544 kb on - strand, within HMPREF1058_RS07125at 307.688 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C)
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304,978 - HMPREF1058_RS07135 0.60 +0.9
305,016 - HMPREF1058_RS07135 0.62 +1.4
305,025 + HMPREF1058_RS07135 0.62 -1.4
305,037 - HMPREF1058_RS07135 0.63 -0.6
305,037 - HMPREF1058_RS07135 0.63 +0.0
305,044 - HMPREF1058_RS07135 0.63 -0.4
305,053 + HMPREF1058_RS07135 0.63 +1.6
305,053 + HMPREF1058_RS07135 0.63 -0.1
305,119 + HMPREF1058_RS07135 0.66 -0.2
305,119 + HMPREF1058_RS07135 0.66 -0.3
305,119 + HMPREF1058_RS07135 0.66 -0.1
305,122 + HMPREF1058_RS07135 0.66 -0.7
305,277 + HMPREF1058_RS07135 0.74 -0.7
305,277 + HMPREF1058_RS07135 0.74 -0.4
305,277 + HMPREF1058_RS07135 0.74 +0.1
305,280 + HMPREF1058_RS07135 0.74 +1.0
305,281 - HMPREF1058_RS07135 0.74 -0.8
305,282 + HMPREF1058_RS07135 0.74 -0.5
305,283 - HMPREF1058_RS07135 0.74 -1.1
305,286 + HMPREF1058_RS07135 0.74 -0.6
305,286 + HMPREF1058_RS07135 0.74 +0.9
305,287 - HMPREF1058_RS07135 0.74 +0.9
305,291 + HMPREF1058_RS07135 0.74 +0.0
305,381 + HMPREF1058_RS07135 0.78 +0.5
305,397 + HMPREF1058_RS07135 0.79 -1.4
305,448 - HMPREF1058_RS07135 0.81 -1.7
305,488 + HMPREF1058_RS07135 0.83 +0.3
305,489 - HMPREF1058_RS07135 0.83 +0.0
305,509 + HMPREF1058_RS07135 0.84 +0.7
305,509 + HMPREF1058_RS07135 0.84 -0.5
305,512 + HMPREF1058_RS07135 0.84 +0.4
305,528 - HMPREF1058_RS07135 0.85 -0.6
305,578 - HMPREF1058_RS07135 0.87 +1.6
305,578 - HMPREF1058_RS07135 0.87 -0.3
305,578 - HMPREF1058_RS07135 0.87 -0.1
305,578 - HMPREF1058_RS07135 0.87 -0.4
305,579 + HMPREF1058_RS07135 0.88 +1.5
305,593 - HMPREF1058_RS07135 0.88 +0.9
305,623 - HMPREF1058_RS07135 0.90 -0.1
305,672 + +1.2
305,672 + +0.5
305,688 + +0.8
305,688 + +0.4
305,708 - +0.7
305,708 - +1.0
305,759 - -1.0
305,759 - -0.4
305,856 + -0.2
305,856 + +0.0
305,857 - +0.4
305,894 - -0.1
305,902 + +0.5
306,002 + HMPREF1058_RS07130 0.17 +1.2
306,082 + HMPREF1058_RS07130 0.27 +0.7
306,083 - HMPREF1058_RS07130 0.27 +1.9
306,125 - HMPREF1058_RS07130 0.32 -0.1
306,142 - HMPREF1058_RS07130 0.34 +0.2
306,185 - HMPREF1058_RS07130 0.39 +1.9
306,185 - HMPREF1058_RS07130 0.39 +1.1
306,194 + HMPREF1058_RS07130 0.40 -0.9
306,234 - HMPREF1058_RS07130 0.45 +0.7
306,283 + HMPREF1058_RS07130 0.51 +1.0
306,312 + HMPREF1058_RS07130 0.54 +0.9
306,313 - HMPREF1058_RS07130 0.54 +0.2
306,408 - HMPREF1058_RS07130 0.65 +1.4
306,479 + HMPREF1058_RS07130 0.74 +0.2
306,479 + HMPREF1058_RS07130 0.74 -0.2
306,479 + HMPREF1058_RS07130 0.74 +1.0
306,613 - HMPREF1058_RS07130 0.90 +0.7
306,670 + -0.3
306,674 + +1.3
306,675 - +0.5
306,675 - -0.5
306,693 + +0.2
306,735 + +0.5
306,756 - -0.3
306,782 + +1.8
306,785 + +0.4
306,786 - +1.0
306,844 + -0.8
306,864 - -0.7
306,888 - -0.3
307,047 - HMPREF1058_RS07125 0.17 -0.0
307,266 - HMPREF1058_RS07125 0.38 -0.3
307,379 - HMPREF1058_RS07125 0.49 +0.1
307,455 - HMPREF1058_RS07125 0.56 -1.4
307,482 - HMPREF1058_RS07125 0.59 +0.2
307,503 + HMPREF1058_RS07125 0.61 +0.3
307,531 + HMPREF1058_RS07125 0.63 -0.5
307,540 - HMPREF1058_RS07125 0.64 -2.0
307,543 + HMPREF1058_RS07125 0.64 +0.5
307,544 - HMPREF1058_RS07125 0.64 -2.5
307,688 + +1.7

Or see this region's nucleotide sequence