Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS20270 and HMPREF1058_RS06950 are separated by 155 nucleotides HMPREF1058_RS06950 and HMPREF1058_RS06945 are separated by 361 nucleotides HMPREF1058_RS06945 and HMPREF1058_RS06940 are separated by 27 nucleotides
HMPREF1058_RS20270: HMPREF1058_RS20270 - AAA family ATPase, at 348,467 to 349,631
_RS20270
HMPREF1058_RS06950: HMPREF1058_RS06950 - hypothetical protein, at 349,787 to 350,758
_RS06950
HMPREF1058_RS06945: HMPREF1058_RS06945 - tRNA-Thr, at 351,120 to 351,192
_RS06945
HMPREF1058_RS06940: HMPREF1058_RS06940 - carboxypeptidase regulatory-like domain-containing protein, at 351,220 to 352,044
_RS06940
Position (kb) 349
350
351 Strain fitness (log2 ratio) -1
0
1 at 348.976 kb on - strand, within HMPREF1058_RS20270 at 349.042 kb on + strand, within HMPREF1058_RS20270 at 349.042 kb on + strand, within HMPREF1058_RS20270 at 349.043 kb on - strand, within HMPREF1058_RS20270 at 349.046 kb on + strand, within HMPREF1058_RS20270 at 349.046 kb on + strand, within HMPREF1058_RS20270 at 349.047 kb on - strand, within HMPREF1058_RS20270 at 349.047 kb on - strand, within HMPREF1058_RS20270 at 349.047 kb on - strand, within HMPREF1058_RS20270 at 349.047 kb on - strand, within HMPREF1058_RS20270 at 349.112 kb on - strand, within HMPREF1058_RS20270 at 349.179 kb on - strand, within HMPREF1058_RS20270 at 349.202 kb on - strand, within HMPREF1058_RS20270 at 349.323 kb on + strand, within HMPREF1058_RS20270 at 349.363 kb on - strand, within HMPREF1058_RS20270 at 349.378 kb on + strand, within HMPREF1058_RS20270 at 349.463 kb on - strand, within HMPREF1058_RS20270 at 349.485 kb on + strand, within HMPREF1058_RS20270 at 349.554 kb on + strand at 349.555 kb on - strand at 349.555 kb on - strand at 349.809 kb on + strand at 350.312 kb on + strand, within HMPREF1058_RS06950 at 350.312 kb on + strand, within HMPREF1058_RS06950 at 350.675 kb on - strand at 350.964 kb on + strand at 351.005 kb on + strand at 351.006 kb on - strand at 351.067 kb on + strand at 351.067 kb on + strand at 351.068 kb on - strand at 351.069 kb on + strand at 351.070 kb on - strand at 351.155 kb on + strand, within HMPREF1058_RS06945 at 351.231 kb on - strand at 351.248 kb on + strand at 351.248 kb on + strand at 351.248 kb on + strand at 351.248 kb on + strand at 351.249 kb on - strand at 351.251 kb on + strand at 351.295 kb on + strand at 351.296 kb on - strand at 351.305 kb on - strand, within HMPREF1058_RS06940 at 351.359 kb on + strand, within HMPREF1058_RS06940 at 351.397 kb on + strand, within HMPREF1058_RS06940 at 351.455 kb on - strand, within HMPREF1058_RS06940 at 351.541 kb on + strand, within HMPREF1058_RS06940 at 351.605 kb on + strand, within HMPREF1058_RS06940 at 351.606 kb on - strand, within HMPREF1058_RS06940 at 351.608 kb on - strand, within HMPREF1058_RS06940 at 351.608 kb on - strand, within HMPREF1058_RS06940 at 351.608 kb on - strand, within HMPREF1058_RS06940 at 351.646 kb on - strand, within HMPREF1058_RS06940 at 351.646 kb on - strand, within HMPREF1058_RS06940 at 351.667 kb on - strand, within HMPREF1058_RS06940
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 348,976 - HMPREF1058_RS20270 0.44 +0.7 349,042 + HMPREF1058_RS20270 0.49 -1.3 349,042 + HMPREF1058_RS20270 0.49 -1.0 349,043 - HMPREF1058_RS20270 0.49 +0.4 349,046 + HMPREF1058_RS20270 0.50 -1.5 349,046 + HMPREF1058_RS20270 0.50 +1.7 349,047 - HMPREF1058_RS20270 0.50 -1.5 349,047 - HMPREF1058_RS20270 0.50 -0.8 349,047 - HMPREF1058_RS20270 0.50 +0.1 349,047 - HMPREF1058_RS20270 0.50 -0.2 349,112 - HMPREF1058_RS20270 0.55 +1.1 349,179 - HMPREF1058_RS20270 0.61 +1.6 349,202 - HMPREF1058_RS20270 0.63 -0.4 349,323 + HMPREF1058_RS20270 0.73 +0.2 349,363 - HMPREF1058_RS20270 0.77 -0.4 349,378 + HMPREF1058_RS20270 0.78 -1.1 349,463 - HMPREF1058_RS20270 0.85 +0.2 349,485 + HMPREF1058_RS20270 0.87 +0.6 349,554 + +0.6 349,555 - +0.5 349,555 - +0.9 349,809 + -0.7 350,312 + HMPREF1058_RS06950 0.54 +0.3 350,312 + HMPREF1058_RS06950 0.54 +0.6 350,675 - +0.1 350,964 + +0.2 351,005 + -0.1 351,006 - +0.1 351,067 + -0.8 351,067 + -0.1 351,068 - -0.8 351,069 + +0.1 351,070 - +0.8 351,155 + HMPREF1058_RS06945 0.48 +0.7 351,231 - +0.1 351,248 + -0.9 351,248 + +0.4 351,248 + -0.5 351,248 + -0.4 351,249 - +1.2 351,251 + +1.3 351,295 + +0.4 351,296 - -0.2 351,305 - HMPREF1058_RS06940 0.10 +0.4 351,359 + HMPREF1058_RS06940 0.17 -1.5 351,397 + HMPREF1058_RS06940 0.21 +0.9 351,455 - HMPREF1058_RS06940 0.28 +0.5 351,541 + HMPREF1058_RS06940 0.39 +0.0 351,605 + HMPREF1058_RS06940 0.47 -0.8 351,606 - HMPREF1058_RS06940 0.47 -1.0 351,608 - HMPREF1058_RS06940 0.47 -0.1 351,608 - HMPREF1058_RS06940 0.47 +1.3 351,608 - HMPREF1058_RS06940 0.47 +0.6 351,646 - HMPREF1058_RS06940 0.52 -1.4 351,646 - HMPREF1058_RS06940 0.52 +0.7 351,667 - HMPREF1058_RS06940 0.54 -1.4
Or see this region's nucleotide sequence