Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06740 and HMPREF1058_RS06735 overlap by 14 nucleotides HMPREF1058_RS06735 and HMPREF1058_RS06730 are separated by 13 nucleotides
HMPREF1058_RS06740: HMPREF1058_RS06740 - glycosyltransferase, at 407,597 to 408,778
_RS06740
HMPREF1058_RS06735: HMPREF1058_RS06735 - ABC transporter permease, at 408,765 to 409,628
_RS06735
HMPREF1058_RS06730: HMPREF1058_RS06730 - ABC transporter ATP-binding protein, at 409,642 to 410,913
_RS06730
Position (kb) 408
409
410 Strain fitness (log2 ratio) -1
0
1
2
3 at 407.833 kb on + strand, within HMPREF1058_RS06740 at 407.833 kb on + strand, within HMPREF1058_RS06740 at 407.833 kb on + strand, within HMPREF1058_RS06740 at 407.834 kb on - strand, within HMPREF1058_RS06740 at 407.874 kb on - strand, within HMPREF1058_RS06740 at 407.925 kb on + strand, within HMPREF1058_RS06740 at 407.946 kb on + strand, within HMPREF1058_RS06740 at 407.947 kb on - strand, within HMPREF1058_RS06740 at 408.039 kb on - strand, within HMPREF1058_RS06740 at 408.068 kb on + strand, within HMPREF1058_RS06740 at 408.069 kb on - strand, within HMPREF1058_RS06740 at 408.132 kb on + strand, within HMPREF1058_RS06740 at 408.133 kb on - strand, within HMPREF1058_RS06740 at 408.192 kb on - strand, within HMPREF1058_RS06740 at 408.192 kb on - strand, within HMPREF1058_RS06740 at 408.192 kb on - strand, within HMPREF1058_RS06740 at 408.399 kb on - strand, within HMPREF1058_RS06740 at 408.455 kb on + strand, within HMPREF1058_RS06740 at 408.473 kb on + strand, within HMPREF1058_RS06740 at 408.473 kb on + strand, within HMPREF1058_RS06740 at 408.622 kb on - strand, within HMPREF1058_RS06740 at 408.647 kb on + strand, within HMPREF1058_RS06740 at 408.650 kb on - strand, within HMPREF1058_RS06740 at 408.685 kb on + strand at 408.706 kb on + strand at 408.707 kb on - strand at 408.717 kb on + strand at 408.718 kb on - strand at 408.718 kb on - strand at 408.869 kb on - strand, within HMPREF1058_RS06735 at 408.874 kb on - strand, within HMPREF1058_RS06735 at 408.874 kb on - strand, within HMPREF1058_RS06735 at 408.916 kb on + strand, within HMPREF1058_RS06735 at 408.917 kb on - strand, within HMPREF1058_RS06735 at 408.950 kb on + strand, within HMPREF1058_RS06735 at 409.053 kb on + strand, within HMPREF1058_RS06735 at 409.053 kb on + strand, within HMPREF1058_RS06735 at 409.070 kb on - strand, within HMPREF1058_RS06735 at 409.157 kb on + strand, within HMPREF1058_RS06735 at 409.158 kb on - strand, within HMPREF1058_RS06735 at 409.444 kb on - strand, within HMPREF1058_RS06735 at 409.445 kb on + strand, within HMPREF1058_RS06735 at 409.445 kb on + strand, within HMPREF1058_RS06735 at 409.446 kb on - strand, within HMPREF1058_RS06735 at 409.446 kb on - strand, within HMPREF1058_RS06735 at 409.537 kb on + strand, within HMPREF1058_RS06735 at 409.545 kb on - strand at 409.545 kb on - strand at 409.556 kb on + strand at 409.557 kb on - strand at 409.557 kb on - strand at 409.593 kb on - strand at 409.684 kb on + strand at 409.843 kb on - strand, within HMPREF1058_RS06730 at 409.875 kb on + strand, within HMPREF1058_RS06730 at 409.878 kb on + strand, within HMPREF1058_RS06730 at 409.879 kb on - strand, within HMPREF1058_RS06730 at 409.880 kb on + strand, within HMPREF1058_RS06730 at 409.880 kb on + strand, within HMPREF1058_RS06730 at 409.881 kb on - strand, within HMPREF1058_RS06730 at 409.881 kb on - strand, within HMPREF1058_RS06730 at 409.881 kb on - strand, within HMPREF1058_RS06730 at 409.884 kb on + strand, within HMPREF1058_RS06730 at 409.884 kb on + strand, within HMPREF1058_RS06730 at 409.884 kb on + strand, within HMPREF1058_RS06730 at 410.032 kb on - strand, within HMPREF1058_RS06730 at 410.035 kb on + strand, within HMPREF1058_RS06730 at 410.036 kb on - strand, within HMPREF1058_RS06730 at 410.037 kb on + strand, within HMPREF1058_RS06730 at 410.322 kb on + strand, within HMPREF1058_RS06730 at 410.322 kb on + strand, within HMPREF1058_RS06730 at 410.460 kb on - strand, within HMPREF1058_RS06730 at 410.464 kb on + strand, within HMPREF1058_RS06730 at 410.464 kb on + strand, within HMPREF1058_RS06730 at 410.465 kb on - strand, within HMPREF1058_RS06730 at 410.495 kb on + strand, within HMPREF1058_RS06730 at 410.495 kb on + strand, within HMPREF1058_RS06730 at 410.602 kb on + strand, within HMPREF1058_RS06730 at 410.602 kb on + strand, within HMPREF1058_RS06730 at 410.603 kb on - strand, within HMPREF1058_RS06730 at 410.603 kb on - strand, within HMPREF1058_RS06730 at 410.609 kb on + strand, within HMPREF1058_RS06730 at 410.609 kb on + strand, within HMPREF1058_RS06730 at 410.610 kb on - strand, within HMPREF1058_RS06730
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 407,833 + HMPREF1058_RS06740 0.20 +0.8 407,833 + HMPREF1058_RS06740 0.20 +0.7 407,833 + HMPREF1058_RS06740 0.20 -0.6 407,834 - HMPREF1058_RS06740 0.20 -0.3 407,874 - HMPREF1058_RS06740 0.23 -0.5 407,925 + HMPREF1058_RS06740 0.28 +1.4 407,946 + HMPREF1058_RS06740 0.30 -0.1 407,947 - HMPREF1058_RS06740 0.30 +1.2 408,039 - HMPREF1058_RS06740 0.37 -0.1 408,068 + HMPREF1058_RS06740 0.40 +1.5 408,069 - HMPREF1058_RS06740 0.40 +0.0 408,132 + HMPREF1058_RS06740 0.45 +0.1 408,133 - HMPREF1058_RS06740 0.45 +0.3 408,192 - HMPREF1058_RS06740 0.50 +0.5 408,192 - HMPREF1058_RS06740 0.50 +1.0 408,192 - HMPREF1058_RS06740 0.50 +0.1 408,399 - HMPREF1058_RS06740 0.68 -0.0 408,455 + HMPREF1058_RS06740 0.73 +0.9 408,473 + HMPREF1058_RS06740 0.74 +1.3 408,473 + HMPREF1058_RS06740 0.74 +1.1 408,622 - HMPREF1058_RS06740 0.87 +1.0 408,647 + HMPREF1058_RS06740 0.89 +0.8 408,650 - HMPREF1058_RS06740 0.89 +1.1 408,685 + -0.1 408,706 + -0.2 408,707 - +0.7 408,717 + +0.3 408,718 - +0.4 408,718 - +1.0 408,869 - HMPREF1058_RS06735 0.12 +1.8 408,874 - HMPREF1058_RS06735 0.13 +1.0 408,874 - HMPREF1058_RS06735 0.13 +0.2 408,916 + HMPREF1058_RS06735 0.17 +0.5 408,917 - HMPREF1058_RS06735 0.18 +0.4 408,950 + HMPREF1058_RS06735 0.21 -0.6 409,053 + HMPREF1058_RS06735 0.33 +0.8 409,053 + HMPREF1058_RS06735 0.33 +1.6 409,070 - HMPREF1058_RS06735 0.35 +2.5 409,157 + HMPREF1058_RS06735 0.45 -1.7 409,158 - HMPREF1058_RS06735 0.45 +1.2 409,444 - HMPREF1058_RS06735 0.79 -0.1 409,445 + HMPREF1058_RS06735 0.79 +0.1 409,445 + HMPREF1058_RS06735 0.79 +0.3 409,446 - HMPREF1058_RS06735 0.79 +0.0 409,446 - HMPREF1058_RS06735 0.79 -0.5 409,537 + HMPREF1058_RS06735 0.89 +2.5 409,545 - +0.5 409,545 - +0.4 409,556 + +0.6 409,557 - +3.0 409,557 - +1.4 409,593 - +1.7 409,684 + +0.3 409,843 - HMPREF1058_RS06730 0.16 -0.4 409,875 + HMPREF1058_RS06730 0.18 +1.9 409,878 + HMPREF1058_RS06730 0.19 +1.0 409,879 - HMPREF1058_RS06730 0.19 +1.8 409,880 + HMPREF1058_RS06730 0.19 +0.2 409,880 + HMPREF1058_RS06730 0.19 -1.1 409,881 - HMPREF1058_RS06730 0.19 +0.1 409,881 - HMPREF1058_RS06730 0.19 +0.2 409,881 - HMPREF1058_RS06730 0.19 -0.7 409,884 + HMPREF1058_RS06730 0.19 +0.1 409,884 + HMPREF1058_RS06730 0.19 +0.3 409,884 + HMPREF1058_RS06730 0.19 +2.0 410,032 - HMPREF1058_RS06730 0.31 +1.0 410,035 + HMPREF1058_RS06730 0.31 +0.2 410,036 - HMPREF1058_RS06730 0.31 +0.2 410,037 + HMPREF1058_RS06730 0.31 +1.2 410,322 + HMPREF1058_RS06730 0.53 +1.3 410,322 + HMPREF1058_RS06730 0.53 +0.8 410,460 - HMPREF1058_RS06730 0.64 +1.7 410,464 + HMPREF1058_RS06730 0.65 +1.2 410,464 + HMPREF1058_RS06730 0.65 -1.5 410,465 - HMPREF1058_RS06730 0.65 +0.5 410,495 + HMPREF1058_RS06730 0.67 -1.0 410,495 + HMPREF1058_RS06730 0.67 +2.6 410,602 + HMPREF1058_RS06730 0.75 +0.5 410,602 + HMPREF1058_RS06730 0.75 -0.0 410,603 - HMPREF1058_RS06730 0.76 +1.8 410,603 - HMPREF1058_RS06730 0.76 -1.3 410,609 + HMPREF1058_RS06730 0.76 +1.4 410,609 + HMPREF1058_RS06730 0.76 +0.2 410,610 - HMPREF1058_RS06730 0.76 +1.3
Or see this region's nucleotide sequence