Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06740 and HMPREF1058_RS06735 overlap by 14 nucleotides HMPREF1058_RS06735 and HMPREF1058_RS06730 are separated by 13 nucleotides HMPREF1058_RS06730 and HMPREF1058_RS06725 are separated by 15 nucleotides HMPREF1058_RS06725 and HMPREF1058_RS06720 are separated by 20 nucleotides
HMPREF1058_RS06740: HMPREF1058_RS06740 - glycosyltransferase, at 407,597 to 408,778
_RS06740
HMPREF1058_RS06735: HMPREF1058_RS06735 - ABC transporter permease, at 408,765 to 409,628
_RS06735
HMPREF1058_RS06730: HMPREF1058_RS06730 - ABC transporter ATP-binding protein, at 409,642 to 410,913
_RS06730
HMPREF1058_RS06725: HMPREF1058_RS06725 - glycosyl transferase, at 410,929 to 411,846
_RS06725
HMPREF1058_RS06720: HMPREF1058_RS06720 - glycosyltransferase, at 411,867 to 412,682
_RS06720
Position (kb) 409
410
411 Strain fitness (log2 ratio) -1
0
1
2
3 at 408.647 kb on + strand, within HMPREF1058_RS06740 at 408.650 kb on - strand, within HMPREF1058_RS06740 at 408.685 kb on + strand at 408.706 kb on + strand at 408.707 kb on - strand at 408.717 kb on + strand at 408.718 kb on - strand at 408.718 kb on - strand at 408.869 kb on - strand, within HMPREF1058_RS06735 at 408.874 kb on - strand, within HMPREF1058_RS06735 at 408.874 kb on - strand, within HMPREF1058_RS06735 at 408.916 kb on + strand, within HMPREF1058_RS06735 at 408.917 kb on - strand, within HMPREF1058_RS06735 at 408.950 kb on + strand, within HMPREF1058_RS06735 at 409.053 kb on + strand, within HMPREF1058_RS06735 at 409.053 kb on + strand, within HMPREF1058_RS06735 at 409.070 kb on - strand, within HMPREF1058_RS06735 at 409.157 kb on + strand, within HMPREF1058_RS06735 at 409.158 kb on - strand, within HMPREF1058_RS06735 at 409.444 kb on - strand, within HMPREF1058_RS06735 at 409.445 kb on + strand, within HMPREF1058_RS06735 at 409.445 kb on + strand, within HMPREF1058_RS06735 at 409.446 kb on - strand, within HMPREF1058_RS06735 at 409.446 kb on - strand, within HMPREF1058_RS06735 at 409.537 kb on + strand, within HMPREF1058_RS06735 at 409.545 kb on - strand at 409.545 kb on - strand at 409.556 kb on + strand at 409.557 kb on - strand at 409.557 kb on - strand at 409.593 kb on - strand at 409.684 kb on + strand at 409.843 kb on - strand, within HMPREF1058_RS06730 at 409.875 kb on + strand, within HMPREF1058_RS06730 at 409.878 kb on + strand, within HMPREF1058_RS06730 at 409.879 kb on - strand, within HMPREF1058_RS06730 at 409.880 kb on + strand, within HMPREF1058_RS06730 at 409.880 kb on + strand, within HMPREF1058_RS06730 at 409.881 kb on - strand, within HMPREF1058_RS06730 at 409.881 kb on - strand, within HMPREF1058_RS06730 at 409.881 kb on - strand, within HMPREF1058_RS06730 at 409.884 kb on + strand, within HMPREF1058_RS06730 at 409.884 kb on + strand, within HMPREF1058_RS06730 at 409.884 kb on + strand, within HMPREF1058_RS06730 at 410.032 kb on - strand, within HMPREF1058_RS06730 at 410.035 kb on + strand, within HMPREF1058_RS06730 at 410.036 kb on - strand, within HMPREF1058_RS06730 at 410.037 kb on + strand, within HMPREF1058_RS06730 at 410.322 kb on + strand, within HMPREF1058_RS06730 at 410.322 kb on + strand, within HMPREF1058_RS06730 at 410.460 kb on - strand, within HMPREF1058_RS06730 at 410.464 kb on + strand, within HMPREF1058_RS06730 at 410.464 kb on + strand, within HMPREF1058_RS06730 at 410.465 kb on - strand, within HMPREF1058_RS06730 at 410.495 kb on + strand, within HMPREF1058_RS06730 at 410.495 kb on + strand, within HMPREF1058_RS06730 at 410.602 kb on + strand, within HMPREF1058_RS06730 at 410.602 kb on + strand, within HMPREF1058_RS06730 at 410.603 kb on - strand, within HMPREF1058_RS06730 at 410.603 kb on - strand, within HMPREF1058_RS06730 at 410.609 kb on + strand, within HMPREF1058_RS06730 at 410.609 kb on + strand, within HMPREF1058_RS06730 at 410.610 kb on - strand, within HMPREF1058_RS06730 at 410.690 kb on + strand, within HMPREF1058_RS06730 at 410.774 kb on + strand, within HMPREF1058_RS06730 at 410.785 kb on - strand, within HMPREF1058_RS06730 at 410.925 kb on + strand at 410.925 kb on + strand at 410.955 kb on - strand at 411.026 kb on - strand, within HMPREF1058_RS06725 at 411.094 kb on + strand at 411.095 kb on - strand, within HMPREF1058_RS06725 at 411.145 kb on - strand, within HMPREF1058_RS06725 at 411.151 kb on + strand, within HMPREF1058_RS06725 at 411.181 kb on - strand, within HMPREF1058_RS06725 at 411.181 kb on - strand, within HMPREF1058_RS06725 at 411.217 kb on - strand, within HMPREF1058_RS06725 at 411.223 kb on + strand, within HMPREF1058_RS06725 at 411.225 kb on + strand, within HMPREF1058_RS06725 at 411.234 kb on + strand, within HMPREF1058_RS06725 at 411.240 kb on - strand, within HMPREF1058_RS06725 at 411.241 kb on + strand, within HMPREF1058_RS06725 at 411.242 kb on - strand, within HMPREF1058_RS06725 at 411.269 kb on + strand, within HMPREF1058_RS06725 at 411.269 kb on + strand, within HMPREF1058_RS06725 at 411.269 kb on + strand, within HMPREF1058_RS06725 at 411.428 kb on + strand, within HMPREF1058_RS06725 at 411.437 kb on + strand, within HMPREF1058_RS06725 at 411.437 kb on + strand, within HMPREF1058_RS06725 at 411.437 kb on + strand, within HMPREF1058_RS06725 at 411.438 kb on - strand, within HMPREF1058_RS06725 at 411.443 kb on + strand, within HMPREF1058_RS06725 at 411.443 kb on + strand, within HMPREF1058_RS06725 at 411.443 kb on + strand, within HMPREF1058_RS06725 at 411.444 kb on - strand, within HMPREF1058_RS06725 at 411.444 kb on - strand, within HMPREF1058_RS06725 at 411.448 kb on - strand, within HMPREF1058_RS06725 at 411.448 kb on - strand, within HMPREF1058_RS06725 at 411.449 kb on + strand, within HMPREF1058_RS06725 at 411.449 kb on + strand, within HMPREF1058_RS06725 at 411.449 kb on + strand, within HMPREF1058_RS06725 at 411.463 kb on - strand, within HMPREF1058_RS06725 at 411.467 kb on + strand, within HMPREF1058_RS06725 at 411.468 kb on - strand, within HMPREF1058_RS06725 at 411.534 kb on + strand, within HMPREF1058_RS06725 at 411.558 kb on + strand, within HMPREF1058_RS06725 at 411.673 kb on - strand, within HMPREF1058_RS06725 at 411.694 kb on + strand, within HMPREF1058_RS06725 at 411.695 kb on - strand, within HMPREF1058_RS06725 at 411.696 kb on + strand, within HMPREF1058_RS06725 at 411.797 kb on - strand at 411.891 kb on - strand at 411.904 kb on - strand at 411.906 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 408,647 + HMPREF1058_RS06740 0.89 +0.8 408,650 - HMPREF1058_RS06740 0.89 +1.1 408,685 + -0.1 408,706 + -0.2 408,707 - +0.7 408,717 + +0.3 408,718 - +0.4 408,718 - +1.0 408,869 - HMPREF1058_RS06735 0.12 +1.8 408,874 - HMPREF1058_RS06735 0.13 +1.0 408,874 - HMPREF1058_RS06735 0.13 +0.2 408,916 + HMPREF1058_RS06735 0.17 +0.5 408,917 - HMPREF1058_RS06735 0.18 +0.4 408,950 + HMPREF1058_RS06735 0.21 -0.6 409,053 + HMPREF1058_RS06735 0.33 +0.8 409,053 + HMPREF1058_RS06735 0.33 +1.6 409,070 - HMPREF1058_RS06735 0.35 +2.5 409,157 + HMPREF1058_RS06735 0.45 -1.7 409,158 - HMPREF1058_RS06735 0.45 +1.2 409,444 - HMPREF1058_RS06735 0.79 -0.1 409,445 + HMPREF1058_RS06735 0.79 +0.1 409,445 + HMPREF1058_RS06735 0.79 +0.3 409,446 - HMPREF1058_RS06735 0.79 +0.0 409,446 - HMPREF1058_RS06735 0.79 -0.5 409,537 + HMPREF1058_RS06735 0.89 +2.5 409,545 - +0.5 409,545 - +0.4 409,556 + +0.6 409,557 - +3.0 409,557 - +1.4 409,593 - +1.7 409,684 + +0.3 409,843 - HMPREF1058_RS06730 0.16 -0.4 409,875 + HMPREF1058_RS06730 0.18 +1.9 409,878 + HMPREF1058_RS06730 0.19 +1.0 409,879 - HMPREF1058_RS06730 0.19 +1.8 409,880 + HMPREF1058_RS06730 0.19 +0.2 409,880 + HMPREF1058_RS06730 0.19 -1.1 409,881 - HMPREF1058_RS06730 0.19 +0.1 409,881 - HMPREF1058_RS06730 0.19 +0.2 409,881 - HMPREF1058_RS06730 0.19 -0.7 409,884 + HMPREF1058_RS06730 0.19 +0.1 409,884 + HMPREF1058_RS06730 0.19 +0.3 409,884 + HMPREF1058_RS06730 0.19 +2.0 410,032 - HMPREF1058_RS06730 0.31 +1.0 410,035 + HMPREF1058_RS06730 0.31 +0.2 410,036 - HMPREF1058_RS06730 0.31 +0.2 410,037 + HMPREF1058_RS06730 0.31 +1.2 410,322 + HMPREF1058_RS06730 0.53 +1.3 410,322 + HMPREF1058_RS06730 0.53 +0.8 410,460 - HMPREF1058_RS06730 0.64 +1.7 410,464 + HMPREF1058_RS06730 0.65 +1.2 410,464 + HMPREF1058_RS06730 0.65 -1.5 410,465 - HMPREF1058_RS06730 0.65 +0.5 410,495 + HMPREF1058_RS06730 0.67 -1.0 410,495 + HMPREF1058_RS06730 0.67 +2.6 410,602 + HMPREF1058_RS06730 0.75 +0.5 410,602 + HMPREF1058_RS06730 0.75 -0.0 410,603 - HMPREF1058_RS06730 0.76 +1.8 410,603 - HMPREF1058_RS06730 0.76 -1.3 410,609 + HMPREF1058_RS06730 0.76 +1.4 410,609 + HMPREF1058_RS06730 0.76 +0.2 410,610 - HMPREF1058_RS06730 0.76 +1.3 410,690 + HMPREF1058_RS06730 0.82 +0.2 410,774 + HMPREF1058_RS06730 0.89 -0.3 410,785 - HMPREF1058_RS06730 0.90 +0.1 410,925 + +0.3 410,925 + -0.4 410,955 - -0.9 411,026 - HMPREF1058_RS06725 0.11 +1.0 411,094 + -0.5 411,095 - HMPREF1058_RS06725 0.18 -1.2 411,145 - HMPREF1058_RS06725 0.24 +3.0 411,151 + HMPREF1058_RS06725 0.24 +0.5 411,181 - HMPREF1058_RS06725 0.27 -1.0 411,181 - HMPREF1058_RS06725 0.27 -0.1 411,217 - HMPREF1058_RS06725 0.31 -0.5 411,223 + HMPREF1058_RS06725 0.32 +2.0 411,225 + HMPREF1058_RS06725 0.32 +0.7 411,234 + HMPREF1058_RS06725 0.33 +1.1 411,240 - HMPREF1058_RS06725 0.34 +0.0 411,241 + HMPREF1058_RS06725 0.34 -1.1 411,242 - HMPREF1058_RS06725 0.34 -0.3 411,269 + HMPREF1058_RS06725 0.37 -0.3 411,269 + HMPREF1058_RS06725 0.37 +0.5 411,269 + HMPREF1058_RS06725 0.37 +0.6 411,428 + HMPREF1058_RS06725 0.54 -1.1 411,437 + HMPREF1058_RS06725 0.55 +1.6 411,437 + HMPREF1058_RS06725 0.55 +0.8 411,437 + HMPREF1058_RS06725 0.55 -1.0 411,438 - HMPREF1058_RS06725 0.55 +0.8 411,443 + HMPREF1058_RS06725 0.56 -1.1 411,443 + HMPREF1058_RS06725 0.56 -1.3 411,443 + HMPREF1058_RS06725 0.56 +1.5 411,444 - HMPREF1058_RS06725 0.56 +1.0 411,444 - HMPREF1058_RS06725 0.56 +2.9 411,448 - HMPREF1058_RS06725 0.57 -0.2 411,448 - HMPREF1058_RS06725 0.57 +0.3 411,449 + HMPREF1058_RS06725 0.57 -0.2 411,449 + HMPREF1058_RS06725 0.57 -1.4 411,449 + HMPREF1058_RS06725 0.57 +0.1 411,463 - HMPREF1058_RS06725 0.58 -0.4 411,467 + HMPREF1058_RS06725 0.59 +0.0 411,468 - HMPREF1058_RS06725 0.59 -0.1 411,534 + HMPREF1058_RS06725 0.66 +1.3 411,558 + HMPREF1058_RS06725 0.69 -0.4 411,673 - HMPREF1058_RS06725 0.81 +0.5 411,694 + HMPREF1058_RS06725 0.83 +0.1 411,695 - HMPREF1058_RS06725 0.83 +0.1 411,696 + HMPREF1058_RS06725 0.84 +0.7 411,797 - -0.1 411,891 - +1.2 411,904 - -0.8 411,906 - +1.4
Or see this region's nucleotide sequence