Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06730 and HMPREF1058_RS06725 are separated by 15 nucleotides HMPREF1058_RS06725 and HMPREF1058_RS06720 are separated by 20 nucleotides HMPREF1058_RS06720 and HMPREF1058_RS06715 are separated by 17 nucleotides HMPREF1058_RS06715 and HMPREF1058_RS06710 are separated by 3 nucleotides
HMPREF1058_RS06730: HMPREF1058_RS06730 - ABC transporter ATP-binding protein, at 409,642 to 410,913
_RS06730
HMPREF1058_RS06725: HMPREF1058_RS06725 - glycosyl transferase, at 410,929 to 411,846
_RS06725
HMPREF1058_RS06720: HMPREF1058_RS06720 - glycosyltransferase, at 411,867 to 412,682
_RS06720
HMPREF1058_RS06715: HMPREF1058_RS06715 - glycosyltransferase, at 412,700 to 413,647
_RS06715
HMPREF1058_RS06710: HMPREF1058_RS06710 - DUF4422 domain-containing protein, at 413,651 to 414,475
_RS06710
Position (kb) 411
412
413 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 410.925 kb on + strand at 410.925 kb on + strand at 410.955 kb on - strand at 411.026 kb on - strand, within HMPREF1058_RS06725 at 411.094 kb on + strand at 411.095 kb on - strand, within HMPREF1058_RS06725 at 411.145 kb on - strand, within HMPREF1058_RS06725 at 411.151 kb on + strand, within HMPREF1058_RS06725 at 411.181 kb on - strand, within HMPREF1058_RS06725 at 411.181 kb on - strand, within HMPREF1058_RS06725 at 411.217 kb on - strand, within HMPREF1058_RS06725 at 411.223 kb on + strand, within HMPREF1058_RS06725 at 411.225 kb on + strand, within HMPREF1058_RS06725 at 411.234 kb on + strand, within HMPREF1058_RS06725 at 411.240 kb on - strand, within HMPREF1058_RS06725 at 411.241 kb on + strand, within HMPREF1058_RS06725 at 411.242 kb on - strand, within HMPREF1058_RS06725 at 411.269 kb on + strand, within HMPREF1058_RS06725 at 411.269 kb on + strand, within HMPREF1058_RS06725 at 411.269 kb on + strand, within HMPREF1058_RS06725 at 411.428 kb on + strand, within HMPREF1058_RS06725 at 411.437 kb on + strand, within HMPREF1058_RS06725 at 411.437 kb on + strand, within HMPREF1058_RS06725 at 411.437 kb on + strand, within HMPREF1058_RS06725 at 411.438 kb on - strand, within HMPREF1058_RS06725 at 411.443 kb on + strand, within HMPREF1058_RS06725 at 411.443 kb on + strand, within HMPREF1058_RS06725 at 411.443 kb on + strand, within HMPREF1058_RS06725 at 411.444 kb on - strand, within HMPREF1058_RS06725 at 411.444 kb on - strand, within HMPREF1058_RS06725 at 411.448 kb on - strand, within HMPREF1058_RS06725 at 411.448 kb on - strand, within HMPREF1058_RS06725 at 411.449 kb on + strand, within HMPREF1058_RS06725 at 411.449 kb on + strand, within HMPREF1058_RS06725 at 411.449 kb on + strand, within HMPREF1058_RS06725 at 411.463 kb on - strand, within HMPREF1058_RS06725 at 411.467 kb on + strand, within HMPREF1058_RS06725 at 411.468 kb on - strand, within HMPREF1058_RS06725 at 411.534 kb on + strand, within HMPREF1058_RS06725 at 411.558 kb on + strand, within HMPREF1058_RS06725 at 411.673 kb on - strand, within HMPREF1058_RS06725 at 411.694 kb on + strand, within HMPREF1058_RS06725 at 411.695 kb on - strand, within HMPREF1058_RS06725 at 411.696 kb on + strand, within HMPREF1058_RS06725 at 411.797 kb on - strand at 411.891 kb on - strand at 411.904 kb on - strand at 411.906 kb on - strand at 411.974 kb on + strand, within HMPREF1058_RS06720 at 412.026 kb on + strand, within HMPREF1058_RS06720 at 412.074 kb on + strand, within HMPREF1058_RS06720 at 412.074 kb on + strand, within HMPREF1058_RS06720 at 412.074 kb on + strand, within HMPREF1058_RS06720 at 412.075 kb on - strand, within HMPREF1058_RS06720 at 412.075 kb on - strand, within HMPREF1058_RS06720 at 412.075 kb on - strand, within HMPREF1058_RS06720 at 412.150 kb on - strand, within HMPREF1058_RS06720 at 412.255 kb on + strand, within HMPREF1058_RS06720 at 412.374 kb on + strand, within HMPREF1058_RS06720 at 412.415 kb on + strand, within HMPREF1058_RS06720 at 412.500 kb on + strand, within HMPREF1058_RS06720 at 412.500 kb on + strand at 412.501 kb on - strand, within HMPREF1058_RS06720 at 412.536 kb on + strand, within HMPREF1058_RS06720 at 412.536 kb on + strand, within HMPREF1058_RS06720 at 412.537 kb on - strand, within HMPREF1058_RS06720 at 412.539 kb on - strand, within HMPREF1058_RS06720 at 412.541 kb on - strand, within HMPREF1058_RS06720 at 412.620 kb on + strand at 412.661 kb on - strand at 412.680 kb on + strand at 412.723 kb on + strand at 412.739 kb on + strand at 412.751 kb on + strand at 412.775 kb on + strand at 412.776 kb on - strand at 412.776 kb on - strand at 412.776 kb on - strand at 412.776 kb on - strand at 412.777 kb on + strand at 412.779 kb on + strand at 412.852 kb on - strand, within HMPREF1058_RS06715 at 412.852 kb on - strand, within HMPREF1058_RS06715 at 412.895 kb on + strand, within HMPREF1058_RS06715 at 412.900 kb on + strand, within HMPREF1058_RS06715 at 412.901 kb on - strand, within HMPREF1058_RS06715 at 412.903 kb on - strand, within HMPREF1058_RS06715 at 412.974 kb on + strand, within HMPREF1058_RS06715 at 413.044 kb on - strand, within HMPREF1058_RS06715 at 413.103 kb on + strand, within HMPREF1058_RS06715 at 413.154 kb on + strand, within HMPREF1058_RS06715 at 413.395 kb on + strand, within HMPREF1058_RS06715 at 413.395 kb on + strand, within HMPREF1058_RS06715 at 413.395 kb on + strand, within HMPREF1058_RS06715 at 413.396 kb on - strand, within HMPREF1058_RS06715 at 413.397 kb on + strand, within HMPREF1058_RS06715 at 413.398 kb on - strand, within HMPREF1058_RS06715 at 413.462 kb on + strand, within HMPREF1058_RS06715 at 413.463 kb on - strand, within HMPREF1058_RS06715 at 413.463 kb on - strand, within HMPREF1058_RS06715 at 413.472 kb on - strand, within HMPREF1058_RS06715 at 413.611 kb on + strand at 413.616 kb on + strand at 413.616 kb on + strand at 413.617 kb on - strand at 413.617 kb on - strand at 413.617 kb on - strand at 413.617 kb on - strand at 413.617 kb on - strand at 413.617 kb on - strand at 413.647 kb on + strand at 413.675 kb on - strand at 413.675 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 410,925 + +0.3 410,925 + -0.4 410,955 - -0.9 411,026 - HMPREF1058_RS06725 0.11 +1.0 411,094 + -0.5 411,095 - HMPREF1058_RS06725 0.18 -1.2 411,145 - HMPREF1058_RS06725 0.24 +3.0 411,151 + HMPREF1058_RS06725 0.24 +0.5 411,181 - HMPREF1058_RS06725 0.27 -1.0 411,181 - HMPREF1058_RS06725 0.27 -0.1 411,217 - HMPREF1058_RS06725 0.31 -0.5 411,223 + HMPREF1058_RS06725 0.32 +2.0 411,225 + HMPREF1058_RS06725 0.32 +0.7 411,234 + HMPREF1058_RS06725 0.33 +1.1 411,240 - HMPREF1058_RS06725 0.34 +0.0 411,241 + HMPREF1058_RS06725 0.34 -1.1 411,242 - HMPREF1058_RS06725 0.34 -0.3 411,269 + HMPREF1058_RS06725 0.37 -0.3 411,269 + HMPREF1058_RS06725 0.37 +0.5 411,269 + HMPREF1058_RS06725 0.37 +0.6 411,428 + HMPREF1058_RS06725 0.54 -1.1 411,437 + HMPREF1058_RS06725 0.55 +1.6 411,437 + HMPREF1058_RS06725 0.55 +0.8 411,437 + HMPREF1058_RS06725 0.55 -1.0 411,438 - HMPREF1058_RS06725 0.55 +0.8 411,443 + HMPREF1058_RS06725 0.56 -1.1 411,443 + HMPREF1058_RS06725 0.56 -1.3 411,443 + HMPREF1058_RS06725 0.56 +1.5 411,444 - HMPREF1058_RS06725 0.56 +1.0 411,444 - HMPREF1058_RS06725 0.56 +2.9 411,448 - HMPREF1058_RS06725 0.57 -0.2 411,448 - HMPREF1058_RS06725 0.57 +0.3 411,449 + HMPREF1058_RS06725 0.57 -0.2 411,449 + HMPREF1058_RS06725 0.57 -1.4 411,449 + HMPREF1058_RS06725 0.57 +0.1 411,463 - HMPREF1058_RS06725 0.58 -0.4 411,467 + HMPREF1058_RS06725 0.59 +0.0 411,468 - HMPREF1058_RS06725 0.59 -0.1 411,534 + HMPREF1058_RS06725 0.66 +1.3 411,558 + HMPREF1058_RS06725 0.69 -0.4 411,673 - HMPREF1058_RS06725 0.81 +0.5 411,694 + HMPREF1058_RS06725 0.83 +0.1 411,695 - HMPREF1058_RS06725 0.83 +0.1 411,696 + HMPREF1058_RS06725 0.84 +0.7 411,797 - -0.1 411,891 - +1.2 411,904 - -0.8 411,906 - +1.4 411,974 + HMPREF1058_RS06720 0.13 +1.0 412,026 + HMPREF1058_RS06720 0.19 +0.8 412,074 + HMPREF1058_RS06720 0.25 -0.2 412,074 + HMPREF1058_RS06720 0.25 -0.1 412,074 + HMPREF1058_RS06720 0.25 +3.0 412,075 - HMPREF1058_RS06720 0.25 -1.3 412,075 - HMPREF1058_RS06720 0.25 +1.5 412,075 - HMPREF1058_RS06720 0.25 +0.7 412,150 - HMPREF1058_RS06720 0.35 +1.9 412,255 + HMPREF1058_RS06720 0.48 +0.7 412,374 + HMPREF1058_RS06720 0.62 -0.7 412,415 + HMPREF1058_RS06720 0.67 +2.0 412,500 + HMPREF1058_RS06720 0.78 +0.1 412,500 + -0.8 412,501 - HMPREF1058_RS06720 0.78 +1.0 412,536 + HMPREF1058_RS06720 0.82 +0.1 412,536 + HMPREF1058_RS06720 0.82 +1.5 412,537 - HMPREF1058_RS06720 0.82 +2.4 412,539 - HMPREF1058_RS06720 0.82 -0.0 412,541 - HMPREF1058_RS06720 0.83 +1.0 412,620 + +0.8 412,661 - -0.1 412,680 + +1.3 412,723 + -0.8 412,739 + -0.3 412,751 + +1.3 412,775 + +0.2 412,776 - -1.1 412,776 - +0.2 412,776 - -0.4 412,776 - +0.3 412,777 + +1.3 412,779 + +1.6 412,852 - HMPREF1058_RS06715 0.16 +0.2 412,852 - HMPREF1058_RS06715 0.16 +2.2 412,895 + HMPREF1058_RS06715 0.21 -0.4 412,900 + HMPREF1058_RS06715 0.21 +0.2 412,901 - HMPREF1058_RS06715 0.21 +0.7 412,903 - HMPREF1058_RS06715 0.21 -1.2 412,974 + HMPREF1058_RS06715 0.29 +0.9 413,044 - HMPREF1058_RS06715 0.36 +0.2 413,103 + HMPREF1058_RS06715 0.43 -0.4 413,154 + HMPREF1058_RS06715 0.48 -0.4 413,395 + HMPREF1058_RS06715 0.73 +1.0 413,395 + HMPREF1058_RS06715 0.73 +0.2 413,395 + HMPREF1058_RS06715 0.73 +0.7 413,396 - HMPREF1058_RS06715 0.73 +0.5 413,397 + HMPREF1058_RS06715 0.74 -1.9 413,398 - HMPREF1058_RS06715 0.74 +0.6 413,462 + HMPREF1058_RS06715 0.80 +0.6 413,463 - HMPREF1058_RS06715 0.80 +1.1 413,463 - HMPREF1058_RS06715 0.80 -0.3 413,472 - HMPREF1058_RS06715 0.81 +0.2 413,611 + -0.9 413,616 + +0.3 413,616 + +1.5 413,617 - +1.2 413,617 - -1.3 413,617 - -0.1 413,617 - +0.3 413,617 - +1.0 413,617 - +1.4 413,647 + +1.2 413,675 - -0.7 413,675 - +0.2
Or see this region's nucleotide sequence