Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06490 and HMPREF1058_RS06485 are separated by 189 nucleotides HMPREF1058_RS06485 and HMPREF1058_RS06480 are separated by 5 nucleotides HMPREF1058_RS06480 and HMPREF1058_RS21465 are separated by 170 nucleotides HMPREF1058_RS21465 and HMPREF1058_RS06475 are separated by 248 nucleotides
HMPREF1058_RS06490: HMPREF1058_RS06490 - YjbH domain-containing protein, at 466,441 to 467,304
_RS06490
HMPREF1058_RS06485: HMPREF1058_RS06485 - hypothetical protein, at 467,494 to 467,709
_RS06485
HMPREF1058_RS06480: HMPREF1058_RS06480 - putative toxin-antitoxin system toxin component, PIN family, at 467,715 to 468,131
_RS06480
HMPREF1058_RS21465: HMPREF1058_RS21465 - hypothetical protein, at 468,302 to 468,481
_RS21465
HMPREF1058_RS06475: HMPREF1058_RS06475 - DUF4373 domain-containing protein, at 468,730 to 470,214
_RS06475
Position (kb) 467
468
469 Strain fitness (log2 ratio) -2
-1
0
1
2 at 466.738 kb on - strand, within HMPREF1058_RS06490 at 466.738 kb on - strand, within HMPREF1058_RS06490 at 466.738 kb on - strand, within HMPREF1058_RS06490 at 466.738 kb on - strand, within HMPREF1058_RS06490 at 466.771 kb on - strand, within HMPREF1058_RS06490 at 466.934 kb on + strand, within HMPREF1058_RS06490 at 466.934 kb on + strand, within HMPREF1058_RS06490 at 466.935 kb on - strand, within HMPREF1058_RS06490 at 466.935 kb on - strand, within HMPREF1058_RS06490 at 466.938 kb on + strand, within HMPREF1058_RS06490 at 466.939 kb on - strand, within HMPREF1058_RS06490 at 466.939 kb on - strand, within HMPREF1058_RS06490 at 466.982 kb on - strand, within HMPREF1058_RS06490 at 467.004 kb on + strand, within HMPREF1058_RS06490 at 467.048 kb on + strand, within HMPREF1058_RS06490 at 467.049 kb on - strand, within HMPREF1058_RS06490 at 467.051 kb on + strand, within HMPREF1058_RS06490 at 467.056 kb on - strand, within HMPREF1058_RS06490 at 467.091 kb on + strand, within HMPREF1058_RS06490 at 467.093 kb on + strand, within HMPREF1058_RS06490 at 467.094 kb on - strand, within HMPREF1058_RS06490 at 467.264 kb on - strand at 467.282 kb on - strand at 467.381 kb on + strand at 467.414 kb on - strand at 467.708 kb on - strand at 467.748 kb on - strand at 467.848 kb on - strand, within HMPREF1058_RS06480 at 467.849 kb on + strand, within HMPREF1058_RS06480 at 467.892 kb on + strand, within HMPREF1058_RS06480 at 467.893 kb on - strand, within HMPREF1058_RS06480 at 467.936 kb on - strand, within HMPREF1058_RS06480 at 467.963 kb on + strand, within HMPREF1058_RS06480 at 467.984 kb on + strand, within HMPREF1058_RS06480 at 467.985 kb on - strand, within HMPREF1058_RS06480 at 468.022 kb on - strand, within HMPREF1058_RS06480 at 468.029 kb on + strand, within HMPREF1058_RS06480 at 468.046 kb on - strand, within HMPREF1058_RS06480 at 468.065 kb on - strand, within HMPREF1058_RS06480 at 468.092 kb on + strand at 468.112 kb on - strand at 468.154 kb on + strand at 468.156 kb on + strand at 468.172 kb on - strand at 468.175 kb on + strand at 468.176 kb on - strand at 468.178 kb on - strand at 468.707 kb on - strand at 468.715 kb on + strand at 468.833 kb on - strand at 468.833 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 466,738 - HMPREF1058_RS06490 0.34 -0.0 466,738 - HMPREF1058_RS06490 0.34 -0.3 466,738 - HMPREF1058_RS06490 0.34 -0.5 466,738 - HMPREF1058_RS06490 0.34 -2.5 466,771 - HMPREF1058_RS06490 0.38 -0.1 466,934 + HMPREF1058_RS06490 0.57 +0.2 466,934 + HMPREF1058_RS06490 0.57 -2.2 466,935 - HMPREF1058_RS06490 0.57 +0.2 466,935 - HMPREF1058_RS06490 0.57 +2.4 466,938 + HMPREF1058_RS06490 0.58 -0.2 466,939 - HMPREF1058_RS06490 0.58 +0.7 466,939 - HMPREF1058_RS06490 0.58 -0.6 466,982 - HMPREF1058_RS06490 0.63 -0.5 467,004 + HMPREF1058_RS06490 0.65 -1.1 467,048 + HMPREF1058_RS06490 0.70 -0.5 467,049 - HMPREF1058_RS06490 0.70 -1.2 467,051 + HMPREF1058_RS06490 0.71 +0.6 467,056 - HMPREF1058_RS06490 0.71 -0.6 467,091 + HMPREF1058_RS06490 0.75 -0.8 467,093 + HMPREF1058_RS06490 0.75 -2.3 467,094 - HMPREF1058_RS06490 0.76 +0.2 467,264 - -2.4 467,282 - -0.1 467,381 + -0.1 467,414 - -0.1 467,708 - +0.6 467,748 - +1.0 467,848 - HMPREF1058_RS06480 0.32 +0.9 467,849 + HMPREF1058_RS06480 0.32 -0.1 467,892 + HMPREF1058_RS06480 0.42 +0.1 467,893 - HMPREF1058_RS06480 0.43 +1.3 467,936 - HMPREF1058_RS06480 0.53 +0.5 467,963 + HMPREF1058_RS06480 0.59 -0.2 467,984 + HMPREF1058_RS06480 0.65 +1.3 467,985 - HMPREF1058_RS06480 0.65 -0.1 468,022 - HMPREF1058_RS06480 0.74 +2.2 468,029 + HMPREF1058_RS06480 0.75 -0.3 468,046 - HMPREF1058_RS06480 0.79 +0.6 468,065 - HMPREF1058_RS06480 0.84 -0.6 468,092 + +0.6 468,112 - -0.2 468,154 + -1.6 468,156 + +0.3 468,172 - +0.3 468,175 + +0.7 468,176 - +1.6 468,178 - +0.0 468,707 - +0.0 468,715 + -0.7 468,833 - -0.4 468,833 - -0.4
Or see this region's nucleotide sequence