Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS06335 and HMPREF1058_RS06330 overlap by 4 nucleotides HMPREF1058_RS06330 and HMPREF1058_RS06325 are separated by 14 nucleotides HMPREF1058_RS06325 and HMPREF1058_RS06320 are separated by 18 nucleotides HMPREF1058_RS06320 and HMPREF1058_RS06315 are separated by 141 nucleotides
HMPREF1058_RS06335: HMPREF1058_RS06335 - RnfABCDGE type electron transport complex subunit D, at 504,236 to 505,225
_RS06335
HMPREF1058_RS06330: HMPREF1058_RS06330 - RnfABCDGE type electron transport complex subunit G, at 505,222 to 506,016
_RS06330
HMPREF1058_RS06325: HMPREF1058_RS06325 - electron transport complex subunit E, at 506,031 to 506,615
_RS06325
HMPREF1058_RS06320: HMPREF1058_RS06320 - electron transport complex subunit RsxA, at 506,634 to 507,236
_RS06320
HMPREF1058_RS06315: HMPREF1058_RS06315 - hypothetical protein, at 507,378 to 508,274
_RS06315
Position (kb) 506
507 Strain fitness (log2 ratio) -2
-1
0
1
2 at 505.031 kb on + strand, within HMPREF1058_RS06335 at 505.031 kb on + strand, within HMPREF1058_RS06335 at 505.036 kb on + strand, within HMPREF1058_RS06335 at 505.036 kb on + strand, within HMPREF1058_RS06335 at 505.036 kb on + strand, within HMPREF1058_RS06335 at 505.037 kb on - strand, within HMPREF1058_RS06335 at 505.037 kb on - strand, within HMPREF1058_RS06335 at 505.054 kb on + strand, within HMPREF1058_RS06335 at 505.067 kb on - strand, within HMPREF1058_RS06335 at 505.067 kb on - strand, within HMPREF1058_RS06335 at 505.133 kb on - strand at 505.147 kb on - strand at 505.184 kb on + strand at 505.189 kb on + strand at 505.195 kb on + strand at 505.443 kb on + strand, within HMPREF1058_RS06330 at 505.444 kb on - strand, within HMPREF1058_RS06330 at 505.444 kb on - strand, within HMPREF1058_RS06330 at 505.452 kb on + strand, within HMPREF1058_RS06330 at 505.557 kb on + strand, within HMPREF1058_RS06330 at 505.558 kb on - strand, within HMPREF1058_RS06330 at 505.568 kb on - strand, within HMPREF1058_RS06330 at 505.568 kb on - strand, within HMPREF1058_RS06330 at 505.627 kb on - strand, within HMPREF1058_RS06330 at 505.656 kb on + strand, within HMPREF1058_RS06330 at 505.685 kb on + strand, within HMPREF1058_RS06330 at 505.779 kb on + strand, within HMPREF1058_RS06330 at 505.779 kb on + strand, within HMPREF1058_RS06330 at 505.780 kb on - strand, within HMPREF1058_RS06330 at 505.972 kb on - strand at 506.030 kb on + strand at 506.108 kb on + strand, within HMPREF1058_RS06325 at 506.191 kb on + strand, within HMPREF1058_RS06325 at 506.201 kb on + strand, within HMPREF1058_RS06325 at 506.231 kb on + strand, within HMPREF1058_RS06325 at 506.232 kb on - strand, within HMPREF1058_RS06325 at 506.295 kb on + strand, within HMPREF1058_RS06325 at 506.330 kb on + strand, within HMPREF1058_RS06325 at 506.470 kb on + strand, within HMPREF1058_RS06325 at 506.471 kb on - strand, within HMPREF1058_RS06325 at 506.598 kb on - strand at 506.641 kb on - strand at 506.641 kb on - strand at 506.643 kb on - strand at 506.644 kb on + strand at 506.644 kb on + strand at 506.651 kb on - strand at 506.655 kb on - strand at 506.744 kb on + strand, within HMPREF1058_RS06320 at 506.795 kb on + strand, within HMPREF1058_RS06320 at 506.799 kb on + strand, within HMPREF1058_RS06320 at 506.799 kb on + strand, within HMPREF1058_RS06320 at 506.799 kb on + strand, within HMPREF1058_RS06320 at 506.800 kb on - strand, within HMPREF1058_RS06320 at 506.805 kb on - strand, within HMPREF1058_RS06320 at 506.885 kb on - strand, within HMPREF1058_RS06320 at 506.914 kb on + strand, within HMPREF1058_RS06320 at 506.915 kb on - strand, within HMPREF1058_RS06320 at 507.036 kb on + strand, within HMPREF1058_RS06320 at 507.036 kb on + strand at 507.047 kb on + strand, within HMPREF1058_RS06320 at 507.103 kb on + strand, within HMPREF1058_RS06320 at 507.117 kb on - strand, within HMPREF1058_RS06320 at 507.118 kb on + strand, within HMPREF1058_RS06320 at 507.118 kb on + strand, within HMPREF1058_RS06320 at 507.119 kb on - strand, within HMPREF1058_RS06320 at 507.122 kb on + strand at 507.199 kb on + strand at 507.301 kb on - strand at 507.358 kb on - strand at 507.397 kb on + strand at 507.423 kb on + strand at 507.423 kb on + strand at 507.489 kb on + strand, within HMPREF1058_RS06315 at 507.489 kb on + strand, within HMPREF1058_RS06315 at 507.489 kb on + strand, within HMPREF1058_RS06315 at 507.489 kb on + strand, within HMPREF1058_RS06315 at 507.490 kb on - strand, within HMPREF1058_RS06315 at 507.490 kb on - strand, within HMPREF1058_RS06315 at 507.490 kb on - strand, within HMPREF1058_RS06315 at 507.490 kb on - strand, within HMPREF1058_RS06315 at 507.490 kb on - strand, within HMPREF1058_RS06315 at 507.490 kb on - strand, within HMPREF1058_RS06315 at 507.532 kb on + strand, within HMPREF1058_RS06315 at 507.579 kb on + strand, within HMPREF1058_RS06315 at 507.580 kb on - strand, within HMPREF1058_RS06315 at 507.603 kb on + strand, within HMPREF1058_RS06315 at 507.603 kb on + strand, within HMPREF1058_RS06315
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 505,031 + HMPREF1058_RS06335 0.80 +0.7 505,031 + HMPREF1058_RS06335 0.80 -1.1 505,036 + HMPREF1058_RS06335 0.81 +0.0 505,036 + HMPREF1058_RS06335 0.81 -0.4 505,036 + HMPREF1058_RS06335 0.81 -1.1 505,037 - HMPREF1058_RS06335 0.81 -1.7 505,037 - HMPREF1058_RS06335 0.81 +0.8 505,054 + HMPREF1058_RS06335 0.83 -0.4 505,067 - HMPREF1058_RS06335 0.84 +0.0 505,067 - HMPREF1058_RS06335 0.84 -0.8 505,133 - -0.5 505,147 - -0.3 505,184 + -0.4 505,189 + -0.3 505,195 + -0.7 505,443 + HMPREF1058_RS06330 0.28 +0.2 505,444 - HMPREF1058_RS06330 0.28 -0.7 505,444 - HMPREF1058_RS06330 0.28 +0.2 505,452 + HMPREF1058_RS06330 0.29 -0.2 505,557 + HMPREF1058_RS06330 0.42 -0.4 505,558 - HMPREF1058_RS06330 0.42 -0.5 505,568 - HMPREF1058_RS06330 0.44 +0.6 505,568 - HMPREF1058_RS06330 0.44 +0.3 505,627 - HMPREF1058_RS06330 0.51 +0.2 505,656 + HMPREF1058_RS06330 0.55 +0.0 505,685 + HMPREF1058_RS06330 0.58 -1.0 505,779 + HMPREF1058_RS06330 0.70 +0.3 505,779 + HMPREF1058_RS06330 0.70 -1.7 505,780 - HMPREF1058_RS06330 0.70 +0.5 505,972 - -1.1 506,030 + +0.5 506,108 + HMPREF1058_RS06325 0.13 -0.3 506,191 + HMPREF1058_RS06325 0.27 +1.2 506,201 + HMPREF1058_RS06325 0.29 +1.3 506,231 + HMPREF1058_RS06325 0.34 +0.6 506,232 - HMPREF1058_RS06325 0.34 +1.2 506,295 + HMPREF1058_RS06325 0.45 +0.8 506,330 + HMPREF1058_RS06325 0.51 -0.7 506,470 + HMPREF1058_RS06325 0.75 +1.1 506,471 - HMPREF1058_RS06325 0.75 +1.5 506,598 - -1.0 506,641 - -1.0 506,641 - +0.7 506,643 - -0.2 506,644 + +0.7 506,644 + +1.5 506,651 - +0.1 506,655 - -0.7 506,744 + HMPREF1058_RS06320 0.18 -1.0 506,795 + HMPREF1058_RS06320 0.27 +0.8 506,799 + HMPREF1058_RS06320 0.27 +0.9 506,799 + HMPREF1058_RS06320 0.27 -0.3 506,799 + HMPREF1058_RS06320 0.27 -0.2 506,800 - HMPREF1058_RS06320 0.28 +1.3 506,805 - HMPREF1058_RS06320 0.28 -0.1 506,885 - HMPREF1058_RS06320 0.42 -0.1 506,914 + HMPREF1058_RS06320 0.46 -0.1 506,915 - HMPREF1058_RS06320 0.47 -0.4 507,036 + HMPREF1058_RS06320 0.67 -0.1 507,036 + +0.0 507,047 + HMPREF1058_RS06320 0.68 +2.0 507,103 + HMPREF1058_RS06320 0.78 +0.5 507,117 - HMPREF1058_RS06320 0.80 +1.0 507,118 + HMPREF1058_RS06320 0.80 +1.7 507,118 + HMPREF1058_RS06320 0.80 +0.8 507,119 - HMPREF1058_RS06320 0.80 -1.1 507,122 + -1.4 507,199 + -1.8 507,301 - -0.6 507,358 - -1.3 507,397 + -0.0 507,423 + -1.5 507,423 + -0.5 507,489 + HMPREF1058_RS06315 0.12 -0.8 507,489 + HMPREF1058_RS06315 0.12 -0.4 507,489 + HMPREF1058_RS06315 0.12 -0.5 507,489 + HMPREF1058_RS06315 0.12 -0.7 507,490 - HMPREF1058_RS06315 0.12 -1.5 507,490 - HMPREF1058_RS06315 0.12 +0.7 507,490 - HMPREF1058_RS06315 0.12 -2.0 507,490 - HMPREF1058_RS06315 0.12 +0.0 507,490 - HMPREF1058_RS06315 0.12 -0.5 507,490 - HMPREF1058_RS06315 0.12 -0.5 507,532 + HMPREF1058_RS06315 0.17 +0.7 507,579 + HMPREF1058_RS06315 0.22 -0.8 507,580 - HMPREF1058_RS06315 0.23 -2.0 507,603 + HMPREF1058_RS06315 0.25 -1.2 507,603 + HMPREF1058_RS06315 0.25 +0.5
Or see this region's nucleotide sequence