Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05965 and HMPREF1058_RS05960 are separated by 401 nucleotides HMPREF1058_RS05960 and HMPREF1058_RS05955 are separated by 8 nucleotides HMPREF1058_RS05955 and HMPREF1058_RS05950 overlap by 4 nucleotides HMPREF1058_RS05950 and HMPREF1058_RS05945 overlap by 4 nucleotides
HMPREF1058_RS05965: HMPREF1058_RS05965 - hypothetical protein, at 40,682 to 41,287
_RS05965
HMPREF1058_RS05960: HMPREF1058_RS05960 - YjbQ family protein, at 41,689 to 42,102
_RS05960
HMPREF1058_RS05955: HMPREF1058_RS05955 - hypothetical protein, at 42,111 to 43,313
_RS05955
HMPREF1058_RS05950: HMPREF1058_RS05950 - ATP-binding cassette domain-containing protein, at 43,310 to 43,954
_RS05950
HMPREF1058_RS05945: HMPREF1058_RS05945 - DUF4836 family protein, at 43,951 to 45,483
_RS05945
Position (kb) 42
43
44 Strain fitness (log2 ratio) -1
0
1
2
3 at 41.113 kb on - strand, within HMPREF1058_RS05965 at 41.160 kb on - strand, within HMPREF1058_RS05965 at 41.237 kb on - strand at 41.258 kb on - strand at 41.354 kb on + strand at 41.372 kb on - strand at 41.433 kb on + strand at 41.433 kb on + strand at 41.434 kb on - strand at 41.481 kb on - strand at 41.481 kb on - strand at 41.536 kb on - strand at 41.549 kb on + strand at 41.549 kb on + strand at 41.550 kb on - strand at 41.550 kb on - strand at 41.550 kb on - strand at 41.550 kb on - strand at 41.550 kb on - strand at 41.551 kb on + strand at 41.554 kb on - strand at 41.706 kb on + strand at 41.754 kb on - strand, within HMPREF1058_RS05960 at 41.864 kb on - strand, within HMPREF1058_RS05960 at 41.864 kb on - strand, within HMPREF1058_RS05960 at 41.868 kb on + strand, within HMPREF1058_RS05960 at 41.868 kb on + strand, within HMPREF1058_RS05960 at 41.879 kb on + strand, within HMPREF1058_RS05960 at 41.880 kb on - strand, within HMPREF1058_RS05960 at 41.880 kb on - strand, within HMPREF1058_RS05960 at 41.973 kb on + strand, within HMPREF1058_RS05960 at 42.045 kb on + strand, within HMPREF1058_RS05960 at 42.106 kb on + strand at 42.107 kb on - strand at 42.120 kb on - strand at 42.129 kb on + strand at 42.131 kb on + strand at 42.131 kb on + strand at 42.131 kb on + strand at 42.132 kb on - strand at 42.132 kb on - strand at 42.132 kb on - strand at 42.144 kb on - strand at 42.151 kb on - strand at 42.165 kb on - strand at 42.174 kb on + strand at 42.199 kb on - strand at 42.257 kb on + strand, within HMPREF1058_RS05955 at 42.263 kb on + strand, within HMPREF1058_RS05955 at 42.265 kb on + strand, within HMPREF1058_RS05955 at 42.266 kb on - strand, within HMPREF1058_RS05955 at 42.371 kb on - strand, within HMPREF1058_RS05955 at 42.371 kb on - strand, within HMPREF1058_RS05955 at 42.376 kb on - strand, within HMPREF1058_RS05955 at 42.424 kb on + strand, within HMPREF1058_RS05955 at 42.443 kb on + strand, within HMPREF1058_RS05955 at 42.443 kb on + strand, within HMPREF1058_RS05955 at 42.475 kb on - strand, within HMPREF1058_RS05955 at 42.762 kb on - strand, within HMPREF1058_RS05955 at 42.762 kb on - strand, within HMPREF1058_RS05955 at 42.765 kb on + strand, within HMPREF1058_RS05955 at 42.765 kb on + strand, within HMPREF1058_RS05955 at 42.765 kb on + strand, within HMPREF1058_RS05955 at 42.766 kb on - strand, within HMPREF1058_RS05955 at 42.776 kb on + strand, within HMPREF1058_RS05955 at 42.853 kb on + strand, within HMPREF1058_RS05955 at 42.962 kb on + strand, within HMPREF1058_RS05955 at 43.141 kb on - strand, within HMPREF1058_RS05955 at 43.148 kb on - strand, within HMPREF1058_RS05955 at 43.314 kb on - strand at 43.332 kb on + strand at 43.417 kb on + strand, within HMPREF1058_RS05950 at 43.450 kb on + strand, within HMPREF1058_RS05950 at 43.450 kb on + strand, within HMPREF1058_RS05950 at 43.468 kb on + strand, within HMPREF1058_RS05950 at 43.539 kb on - strand, within HMPREF1058_RS05950 at 43.547 kb on - strand, within HMPREF1058_RS05950 at 43.606 kb on + strand, within HMPREF1058_RS05950 at 43.687 kb on + strand, within HMPREF1058_RS05950 at 43.688 kb on - strand, within HMPREF1058_RS05950 at 43.766 kb on - strand, within HMPREF1058_RS05950 at 43.773 kb on + strand, within HMPREF1058_RS05950 at 43.793 kb on + strand, within HMPREF1058_RS05950 at 43.793 kb on + strand, within HMPREF1058_RS05950 at 43.793 kb on + strand, within HMPREF1058_RS05950 at 43.794 kb on - strand, within HMPREF1058_RS05950 at 43.798 kb on - strand, within HMPREF1058_RS05950 at 43.846 kb on - strand, within HMPREF1058_RS05950 at 43.846 kb on - strand, within HMPREF1058_RS05950 at 43.892 kb on + strand at 43.898 kb on - strand at 43.937 kb on + strand at 43.954 kb on + strand at 43.955 kb on - strand at 43.972 kb on + strand at 44.016 kb on + strand at 44.060 kb on + strand at 44.275 kb on - strand, within HMPREF1058_RS05945
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 41,113 - HMPREF1058_RS05965 0.71 -1.4 41,160 - HMPREF1058_RS05965 0.79 -0.6 41,237 - +0.5 41,258 - +0.0 41,354 + +0.2 41,372 - -0.4 41,433 + +1.0 41,433 + +1.7 41,434 - -0.9 41,481 - +0.1 41,481 - +0.4 41,536 - -0.3 41,549 + +0.5 41,549 + +1.0 41,550 - +0.6 41,550 - -0.5 41,550 - -0.6 41,550 - +1.4 41,550 - -1.3 41,551 + -1.5 41,554 - +0.6 41,706 + +0.6 41,754 - HMPREF1058_RS05960 0.16 +1.5 41,864 - HMPREF1058_RS05960 0.42 -0.0 41,864 - HMPREF1058_RS05960 0.42 -0.2 41,868 + HMPREF1058_RS05960 0.43 -1.4 41,868 + HMPREF1058_RS05960 0.43 -0.3 41,879 + HMPREF1058_RS05960 0.46 -0.5 41,880 - HMPREF1058_RS05960 0.46 -1.4 41,880 - HMPREF1058_RS05960 0.46 +0.9 41,973 + HMPREF1058_RS05960 0.69 -1.2 42,045 + HMPREF1058_RS05960 0.86 -0.1 42,106 + -0.2 42,107 - +0.6 42,120 - -0.2 42,129 + +0.1 42,131 + -0.1 42,131 + +3.2 42,131 + +0.9 42,132 - +1.5 42,132 - -0.3 42,132 - +0.7 42,144 - +1.7 42,151 - +0.0 42,165 - -0.4 42,174 + +0.0 42,199 - +0.7 42,257 + HMPREF1058_RS05955 0.12 +0.1 42,263 + HMPREF1058_RS05955 0.13 +2.0 42,265 + HMPREF1058_RS05955 0.13 +0.5 42,266 - HMPREF1058_RS05955 0.13 +0.9 42,371 - HMPREF1058_RS05955 0.22 +0.6 42,371 - HMPREF1058_RS05955 0.22 +1.0 42,376 - HMPREF1058_RS05955 0.22 +0.4 42,424 + HMPREF1058_RS05955 0.26 -0.4 42,443 + HMPREF1058_RS05955 0.28 +0.7 42,443 + HMPREF1058_RS05955 0.28 -0.3 42,475 - HMPREF1058_RS05955 0.30 +1.1 42,762 - HMPREF1058_RS05955 0.54 +1.0 42,762 - HMPREF1058_RS05955 0.54 -0.6 42,765 + HMPREF1058_RS05955 0.54 +0.3 42,765 + HMPREF1058_RS05955 0.54 +2.1 42,765 + HMPREF1058_RS05955 0.54 -0.4 42,766 - HMPREF1058_RS05955 0.54 +0.3 42,776 + HMPREF1058_RS05955 0.55 +0.7 42,853 + HMPREF1058_RS05955 0.62 -0.2 42,962 + HMPREF1058_RS05955 0.71 +2.4 43,141 - HMPREF1058_RS05955 0.86 +1.1 43,148 - HMPREF1058_RS05955 0.86 +0.5 43,314 - -0.8 43,332 + +0.4 43,417 + HMPREF1058_RS05950 0.17 +0.7 43,450 + HMPREF1058_RS05950 0.22 +0.5 43,450 + HMPREF1058_RS05950 0.22 -0.1 43,468 + HMPREF1058_RS05950 0.24 +2.8 43,539 - HMPREF1058_RS05950 0.36 -0.3 43,547 - HMPREF1058_RS05950 0.37 +0.5 43,606 + HMPREF1058_RS05950 0.46 +0.8 43,687 + HMPREF1058_RS05950 0.58 -0.8 43,688 - HMPREF1058_RS05950 0.59 +0.6 43,766 - HMPREF1058_RS05950 0.71 -0.1 43,773 + HMPREF1058_RS05950 0.72 +0.4 43,793 + HMPREF1058_RS05950 0.75 -1.5 43,793 + HMPREF1058_RS05950 0.75 -1.5 43,793 + HMPREF1058_RS05950 0.75 +1.0 43,794 - HMPREF1058_RS05950 0.75 +2.3 43,798 - HMPREF1058_RS05950 0.76 +0.8 43,846 - HMPREF1058_RS05950 0.83 +1.0 43,846 - HMPREF1058_RS05950 0.83 +0.9 43,892 + -0.2 43,898 - +0.8 43,937 + -0.1 43,954 + +1.4 43,955 - -0.3 43,972 + +1.2 44,016 + +0.0 44,060 + +1.1 44,275 - HMPREF1058_RS05945 0.21 -0.1
Or see this region's nucleotide sequence