Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05945 and HMPREF1058_RS05940 are separated by 4 nucleotides HMPREF1058_RS05940 and HMPREF1058_RS05935 are separated by 28 nucleotides HMPREF1058_RS05935 and HMPREF1058_RS05930 are separated by 58 nucleotides
HMPREF1058_RS05945: HMPREF1058_RS05945 - DUF4836 family protein, at 43,951 to 45,483
_RS05945
HMPREF1058_RS05940: HMPREF1058_RS05940 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 45,488 to 46,189
_RS05940
HMPREF1058_RS05935: HMPREF1058_RS05935 - bifunctional nuclease family protein, at 46,218 to 46,784
_RS05935
HMPREF1058_RS05930: HMPREF1058_RS05930 - MFS transporter, at 46,843 to 48,120
_RS05930
Position (kb) 45
46
47 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 44.509 kb on + strand, within HMPREF1058_RS05945 at 44.563 kb on - strand, within HMPREF1058_RS05945 at 44.604 kb on + strand, within HMPREF1058_RS05945 at 44.607 kb on + strand, within HMPREF1058_RS05945 at 44.628 kb on + strand, within HMPREF1058_RS05945 at 44.642 kb on + strand, within HMPREF1058_RS05945 at 44.662 kb on - strand, within HMPREF1058_RS05945 at 44.697 kb on + strand, within HMPREF1058_RS05945 at 44.698 kb on - strand, within HMPREF1058_RS05945 at 44.698 kb on - strand, within HMPREF1058_RS05945 at 44.856 kb on + strand, within HMPREF1058_RS05945 at 44.856 kb on + strand, within HMPREF1058_RS05945 at 44.856 kb on + strand, within HMPREF1058_RS05945 at 44.857 kb on - strand, within HMPREF1058_RS05945 at 44.917 kb on + strand, within HMPREF1058_RS05945 at 44.995 kb on - strand, within HMPREF1058_RS05945 at 45.021 kb on + strand, within HMPREF1058_RS05945 at 45.022 kb on - strand, within HMPREF1058_RS05945 at 45.058 kb on - strand, within HMPREF1058_RS05945 at 45.088 kb on + strand, within HMPREF1058_RS05945 at 45.154 kb on + strand, within HMPREF1058_RS05945 at 45.169 kb on - strand, within HMPREF1058_RS05945 at 45.189 kb on + strand, within HMPREF1058_RS05945 at 45.189 kb on + strand, within HMPREF1058_RS05945 at 45.189 kb on + strand, within HMPREF1058_RS05945 at 45.190 kb on - strand, within HMPREF1058_RS05945 at 45.190 kb on - strand, within HMPREF1058_RS05945 at 45.190 kb on - strand, within HMPREF1058_RS05945 at 45.191 kb on + strand, within HMPREF1058_RS05945 at 45.192 kb on - strand, within HMPREF1058_RS05945 at 45.258 kb on - strand, within HMPREF1058_RS05945 at 45.397 kb on - strand at 45.408 kb on - strand at 45.471 kb on + strand at 45.484 kb on - strand at 45.503 kb on + strand at 45.514 kb on + strand at 45.514 kb on + strand at 45.592 kb on + strand, within HMPREF1058_RS05940 at 45.669 kb on - strand, within HMPREF1058_RS05940 at 45.751 kb on + strand, within HMPREF1058_RS05940 at 45.752 kb on - strand, within HMPREF1058_RS05940 at 45.961 kb on + strand, within HMPREF1058_RS05940 at 46.047 kb on - strand, within HMPREF1058_RS05940 at 46.085 kb on + strand, within HMPREF1058_RS05940 at 46.164 kb on - strand at 46.164 kb on - strand at 46.189 kb on + strand at 46.189 kb on + strand at 46.189 kb on + strand at 46.189 kb on + strand at 46.189 kb on + strand at 46.190 kb on - strand at 46.212 kb on + strand at 46.212 kb on + strand at 46.213 kb on - strand at 46.224 kb on + strand at 46.224 kb on + strand at 46.225 kb on - strand at 46.225 kb on - strand at 46.350 kb on + strand, within HMPREF1058_RS05935 at 46.351 kb on - strand, within HMPREF1058_RS05935 at 46.351 kb on - strand, within HMPREF1058_RS05935 at 46.419 kb on - strand, within HMPREF1058_RS05935 at 46.420 kb on + strand, within HMPREF1058_RS05935 at 46.421 kb on - strand, within HMPREF1058_RS05935 at 46.476 kb on + strand, within HMPREF1058_RS05935 at 46.482 kb on - strand, within HMPREF1058_RS05935 at 46.514 kb on - strand, within HMPREF1058_RS05935 at 46.514 kb on - strand, within HMPREF1058_RS05935 at 46.542 kb on - strand, within HMPREF1058_RS05935 at 46.542 kb on - strand, within HMPREF1058_RS05935 at 46.543 kb on + strand, within HMPREF1058_RS05935 at 46.544 kb on - strand, within HMPREF1058_RS05935 at 46.545 kb on + strand, within HMPREF1058_RS05935 at 46.546 kb on - strand, within HMPREF1058_RS05935 at 46.551 kb on + strand, within HMPREF1058_RS05935 at 46.552 kb on - strand, within HMPREF1058_RS05935 at 46.625 kb on + strand, within HMPREF1058_RS05935 at 46.628 kb on - strand, within HMPREF1058_RS05935 at 46.646 kb on + strand, within HMPREF1058_RS05935 at 46.650 kb on - strand, within HMPREF1058_RS05935 at 46.676 kb on + strand, within HMPREF1058_RS05935 at 46.677 kb on - strand, within HMPREF1058_RS05935 at 46.724 kb on - strand, within HMPREF1058_RS05935 at 46.754 kb on + strand at 46.755 kb on - strand at 46.774 kb on - strand at 46.774 kb on - strand at 46.785 kb on - strand at 46.789 kb on + strand at 46.841 kb on + strand at 46.867 kb on - strand at 46.868 kb on + strand at 46.868 kb on + strand at 46.868 kb on + strand at 47.077 kb on + strand, within HMPREF1058_RS05930 at 47.141 kb on + strand, within HMPREF1058_RS05930
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 44,509 + HMPREF1058_RS05945 0.36 -0.3 44,563 - HMPREF1058_RS05945 0.40 -1.1 44,604 + HMPREF1058_RS05945 0.43 +1.7 44,607 + HMPREF1058_RS05945 0.43 -0.7 44,628 + HMPREF1058_RS05945 0.44 +0.4 44,642 + HMPREF1058_RS05945 0.45 +0.3 44,662 - HMPREF1058_RS05945 0.46 -1.0 44,697 + HMPREF1058_RS05945 0.49 -0.3 44,698 - HMPREF1058_RS05945 0.49 +0.8 44,698 - HMPREF1058_RS05945 0.49 -0.8 44,856 + HMPREF1058_RS05945 0.59 +0.8 44,856 + HMPREF1058_RS05945 0.59 +0.2 44,856 + HMPREF1058_RS05945 0.59 +0.8 44,857 - HMPREF1058_RS05945 0.59 +0.9 44,917 + HMPREF1058_RS05945 0.63 +1.0 44,995 - HMPREF1058_RS05945 0.68 -0.8 45,021 + HMPREF1058_RS05945 0.70 +1.5 45,022 - HMPREF1058_RS05945 0.70 -0.0 45,058 - HMPREF1058_RS05945 0.72 -0.6 45,088 + HMPREF1058_RS05945 0.74 +0.1 45,154 + HMPREF1058_RS05945 0.78 +2.4 45,169 - HMPREF1058_RS05945 0.79 +1.5 45,189 + HMPREF1058_RS05945 0.81 +1.5 45,189 + HMPREF1058_RS05945 0.81 -0.3 45,189 + HMPREF1058_RS05945 0.81 +1.1 45,190 - HMPREF1058_RS05945 0.81 +0.0 45,190 - HMPREF1058_RS05945 0.81 +1.0 45,190 - HMPREF1058_RS05945 0.81 +1.3 45,191 + HMPREF1058_RS05945 0.81 -0.6 45,192 - HMPREF1058_RS05945 0.81 +0.2 45,258 - HMPREF1058_RS05945 0.85 +0.6 45,397 - -0.2 45,408 - +0.1 45,471 + +1.9 45,484 - +1.1 45,503 + +1.9 45,514 + +0.8 45,514 + +0.8 45,592 + HMPREF1058_RS05940 0.15 +1.3 45,669 - HMPREF1058_RS05940 0.26 +1.2 45,751 + HMPREF1058_RS05940 0.37 +1.3 45,752 - HMPREF1058_RS05940 0.38 -0.2 45,961 + HMPREF1058_RS05940 0.67 +0.9 46,047 - HMPREF1058_RS05940 0.80 +0.4 46,085 + HMPREF1058_RS05940 0.85 +1.6 46,164 - +0.1 46,164 - -1.1 46,189 + +1.0 46,189 + -0.1 46,189 + +1.2 46,189 + +1.1 46,189 + -0.1 46,190 - +0.5 46,212 + +0.4 46,212 + -0.3 46,213 - -1.4 46,224 + -0.1 46,224 + +0.5 46,225 - -0.7 46,225 - +0.4 46,350 + HMPREF1058_RS05935 0.23 -0.7 46,351 - HMPREF1058_RS05935 0.23 -0.8 46,351 - HMPREF1058_RS05935 0.23 -0.2 46,419 - HMPREF1058_RS05935 0.35 -0.9 46,420 + HMPREF1058_RS05935 0.36 -2.1 46,421 - HMPREF1058_RS05935 0.36 -2.1 46,476 + HMPREF1058_RS05935 0.46 +1.5 46,482 - HMPREF1058_RS05935 0.47 -0.5 46,514 - HMPREF1058_RS05935 0.52 -2.3 46,514 - HMPREF1058_RS05935 0.52 +0.2 46,542 - HMPREF1058_RS05935 0.57 -0.3 46,542 - HMPREF1058_RS05935 0.57 -0.3 46,543 + HMPREF1058_RS05935 0.57 +0.0 46,544 - HMPREF1058_RS05935 0.57 -1.2 46,545 + HMPREF1058_RS05935 0.58 -0.2 46,546 - HMPREF1058_RS05935 0.58 -0.2 46,551 + HMPREF1058_RS05935 0.59 +1.8 46,552 - HMPREF1058_RS05935 0.59 +0.1 46,625 + HMPREF1058_RS05935 0.72 -0.4 46,628 - HMPREF1058_RS05935 0.72 -0.5 46,646 + HMPREF1058_RS05935 0.75 +0.8 46,650 - HMPREF1058_RS05935 0.76 -2.0 46,676 + HMPREF1058_RS05935 0.81 -1.7 46,677 - HMPREF1058_RS05935 0.81 -1.0 46,724 - HMPREF1058_RS05935 0.89 -1.1 46,754 + -0.7 46,755 - -2.9 46,774 - -0.8 46,774 - -1.3 46,785 - +0.0 46,789 + +0.1 46,841 + -3.0 46,867 - -0.8 46,868 + -1.4 46,868 + -0.5 46,868 + -0.7 47,077 + HMPREF1058_RS05930 0.18 -0.7 47,141 + HMPREF1058_RS05930 0.23 -0.6
Or see this region's nucleotide sequence