Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS05765

Experiment: Xylan from corn core 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS05770 and HMPREF1058_RS05765 are separated by 193 nucleotidesHMPREF1058_RS05765 and HMPREF1058_RS05760 are separated by 209 nucleotidesHMPREF1058_RS05760 and HMPREF1058_RS05755 are separated by 13 nucleotides HMPREF1058_RS05770: HMPREF1058_RS05770 - flotillin-like protein FloA, at 83,375 to 84,373 _RS05770 HMPREF1058_RS05765: HMPREF1058_RS05765 - nucleoside phosphorylase, at 84,567 to 85,445 _RS05765 HMPREF1058_RS05760: HMPREF1058_RS05760 - GAF domain-containing protein, at 85,655 to 86,140 _RS05760 HMPREF1058_RS05755: HMPREF1058_RS05755 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE, at 86,154 to 87,647 _RS05755 Position (kb) 84 85 86Strain fitness (log2 ratio) -2 -1 0 1 2at 83.622 kb on - strand, within HMPREF1058_RS05770at 83.622 kb on - strand, within HMPREF1058_RS05770at 83.622 kb on - strand, within HMPREF1058_RS05770at 83.624 kb on - strand, within HMPREF1058_RS05770at 83.662 kb on - strand, within HMPREF1058_RS05770at 83.662 kb on - strand, within HMPREF1058_RS05770at 83.737 kb on - strand, within HMPREF1058_RS05770at 83.767 kb on + strand, within HMPREF1058_RS05770at 83.767 kb on + strand, within HMPREF1058_RS05770at 83.814 kb on + strand, within HMPREF1058_RS05770at 83.915 kb on - strandat 83.915 kb on - strand, within HMPREF1058_RS05770at 83.974 kb on + strand, within HMPREF1058_RS05770at 83.980 kb on + strand, within HMPREF1058_RS05770at 83.985 kb on + strand, within HMPREF1058_RS05770at 84.004 kb on - strand, within HMPREF1058_RS05770at 84.040 kb on + strand, within HMPREF1058_RS05770at 84.041 kb on - strand, within HMPREF1058_RS05770at 84.042 kb on + strand, within HMPREF1058_RS05770at 84.113 kb on - strand, within HMPREF1058_RS05770at 84.205 kb on - strand, within HMPREF1058_RS05770at 84.265 kb on - strand, within HMPREF1058_RS05770at 84.278 kb on + strandat 84.298 kb on - strandat 84.307 kb on + strandat 84.307 kb on + strandat 84.325 kb on + strandat 84.363 kb on + strandat 84.364 kb on - strandat 84.371 kb on + strandat 84.377 kb on + strandat 84.380 kb on + strandat 84.392 kb on - strandat 84.441 kb on + strandat 84.445 kb on - strandat 84.475 kb on + strandat 84.476 kb on - strandat 84.532 kb on - strandat 84.566 kb on + strandat 84.579 kb on + strandat 84.618 kb on - strandat 84.667 kb on + strand, within HMPREF1058_RS05765at 84.668 kb on - strand, within HMPREF1058_RS05765at 84.689 kb on - strand, within HMPREF1058_RS05765at 84.694 kb on + strand, within HMPREF1058_RS05765at 84.697 kb on + strand, within HMPREF1058_RS05765at 84.697 kb on + strand, within HMPREF1058_RS05765at 84.731 kb on - strand, within HMPREF1058_RS05765at 84.731 kb on - strand, within HMPREF1058_RS05765at 84.731 kb on - strand, within HMPREF1058_RS05765at 84.765 kb on + strand, within HMPREF1058_RS05765at 84.765 kb on + strand, within HMPREF1058_RS05765at 84.765 kb on + strand, within HMPREF1058_RS05765at 84.766 kb on - strand, within HMPREF1058_RS05765at 84.766 kb on - strand, within HMPREF1058_RS05765at 84.768 kb on - strand, within HMPREF1058_RS05765at 84.768 kb on - strand, within HMPREF1058_RS05765at 84.787 kb on + strand, within HMPREF1058_RS05765at 84.788 kb on - strand, within HMPREF1058_RS05765at 84.802 kb on + strand, within HMPREF1058_RS05765at 84.802 kb on + strand, within HMPREF1058_RS05765at 84.815 kb on + strand, within HMPREF1058_RS05765at 84.815 kb on + strand, within HMPREF1058_RS05765at 84.815 kb on + strand, within HMPREF1058_RS05765at 84.816 kb on - strand, within HMPREF1058_RS05765at 84.818 kb on - strand, within HMPREF1058_RS05765at 84.957 kb on + strand, within HMPREF1058_RS05765at 84.958 kb on - strand, within HMPREF1058_RS05765at 85.076 kb on + strand, within HMPREF1058_RS05765at 85.081 kb on + strand, within HMPREF1058_RS05765at 85.081 kb on + strand, within HMPREF1058_RS05765at 85.081 kb on + strand, within HMPREF1058_RS05765at 85.081 kb on + strand, within HMPREF1058_RS05765at 85.081 kb on + strand, within HMPREF1058_RS05765at 85.082 kb on - strand, within HMPREF1058_RS05765at 85.099 kb on - strand, within HMPREF1058_RS05765at 85.162 kb on + strand, within HMPREF1058_RS05765at 85.349 kb on - strand, within HMPREF1058_RS05765at 85.349 kb on - strand, within HMPREF1058_RS05765at 85.353 kb on - strand, within HMPREF1058_RS05765at 85.444 kb on - strandat 85.444 kb on - strandat 85.455 kb on + strandat 85.463 kb on + strandat 85.467 kb on + strandat 85.468 kb on - strandat 85.468 kb on - strandat 85.468 kb on - strandat 85.596 kb on + strandat 85.639 kb on + strandat 85.649 kb on - strandat 85.685 kb on - strandat 85.693 kb on - strandat 85.731 kb on + strand, within HMPREF1058_RS05760at 85.843 kb on + strand, within HMPREF1058_RS05760at 85.902 kb on + strand, within HMPREF1058_RS05760at 85.903 kb on - strandat 85.950 kb on + strand, within HMPREF1058_RS05760at 85.969 kb on + strand, within HMPREF1058_RS05760at 85.970 kb on - strand, within HMPREF1058_RS05760at 86.011 kb on + strand, within HMPREF1058_RS05760at 86.031 kb on + strand, within HMPREF1058_RS05760at 86.057 kb on - strand, within HMPREF1058_RS05760at 86.119 kb on - strandat 86.122 kb on + strandat 86.219 kb on - strandat 86.298 kb on + strandat 86.299 kb on - strandat 86.299 kb on - strandat 86.300 kb on + strandat 86.301 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C)
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83,622 - HMPREF1058_RS05770 0.25 +1.8
83,622 - HMPREF1058_RS05770 0.25 +1.0
83,622 - HMPREF1058_RS05770 0.25 +1.1
83,624 - HMPREF1058_RS05770 0.25 +1.9
83,662 - HMPREF1058_RS05770 0.29 -0.3
83,662 - HMPREF1058_RS05770 0.29 -0.6
83,737 - HMPREF1058_RS05770 0.36 +0.8
83,767 + HMPREF1058_RS05770 0.39 +0.7
83,767 + HMPREF1058_RS05770 0.39 +0.3
83,814 + HMPREF1058_RS05770 0.44 -0.6
83,915 - +1.5
83,915 - HMPREF1058_RS05770 0.54 -0.0
83,974 + HMPREF1058_RS05770 0.60 +1.2
83,980 + HMPREF1058_RS05770 0.61 -0.4
83,985 + HMPREF1058_RS05770 0.61 -0.9
84,004 - HMPREF1058_RS05770 0.63 +0.6
84,040 + HMPREF1058_RS05770 0.67 +0.7
84,041 - HMPREF1058_RS05770 0.67 -0.5
84,042 + HMPREF1058_RS05770 0.67 +0.0
84,113 - HMPREF1058_RS05770 0.74 -1.5
84,205 - HMPREF1058_RS05770 0.83 +0.1
84,265 - HMPREF1058_RS05770 0.89 +0.3
84,278 + -1.1
84,298 - -0.8
84,307 + +0.4
84,307 + -0.2
84,325 + -2.7
84,363 + +0.5
84,364 - +1.2
84,371 + -1.0
84,377 + +1.6
84,380 + +1.0
84,392 - -0.3
84,441 + -0.7
84,445 - -0.1
84,475 + +2.0
84,476 - -0.7
84,532 - +1.4
84,566 + +1.4
84,579 + +0.0
84,618 - +1.2
84,667 + HMPREF1058_RS05765 0.11 -0.9
84,668 - HMPREF1058_RS05765 0.11 +0.5
84,689 - HMPREF1058_RS05765 0.14 -1.7
84,694 + HMPREF1058_RS05765 0.14 +1.3
84,697 + HMPREF1058_RS05765 0.15 +1.9
84,697 + HMPREF1058_RS05765 0.15 +0.2
84,731 - HMPREF1058_RS05765 0.19 +0.1
84,731 - HMPREF1058_RS05765 0.19 -2.2
84,731 - HMPREF1058_RS05765 0.19 +1.2
84,765 + HMPREF1058_RS05765 0.23 +0.0
84,765 + HMPREF1058_RS05765 0.23 +1.0
84,765 + HMPREF1058_RS05765 0.23 +0.7
84,766 - HMPREF1058_RS05765 0.23 -1.5
84,766 - HMPREF1058_RS05765 0.23 +1.0
84,768 - HMPREF1058_RS05765 0.23 +0.8
84,768 - HMPREF1058_RS05765 0.23 +2.4
84,787 + HMPREF1058_RS05765 0.25 +0.7
84,788 - HMPREF1058_RS05765 0.25 +0.0
84,802 + HMPREF1058_RS05765 0.27 +0.6
84,802 + HMPREF1058_RS05765 0.27 +1.8
84,815 + HMPREF1058_RS05765 0.28 +1.7
84,815 + HMPREF1058_RS05765 0.28 -0.0
84,815 + HMPREF1058_RS05765 0.28 +1.7
84,816 - HMPREF1058_RS05765 0.28 +1.9
84,818 - HMPREF1058_RS05765 0.29 -0.7
84,957 + HMPREF1058_RS05765 0.44 +1.4
84,958 - HMPREF1058_RS05765 0.44 +1.0
85,076 + HMPREF1058_RS05765 0.58 +0.1
85,081 + HMPREF1058_RS05765 0.58 +0.2
85,081 + HMPREF1058_RS05765 0.58 +0.7
85,081 + HMPREF1058_RS05765 0.58 +0.4
85,081 + HMPREF1058_RS05765 0.58 +0.5
85,081 + HMPREF1058_RS05765 0.58 +0.2
85,082 - HMPREF1058_RS05765 0.59 -0.8
85,099 - HMPREF1058_RS05765 0.61 -1.4
85,162 + HMPREF1058_RS05765 0.68 +0.3
85,349 - HMPREF1058_RS05765 0.89 -0.4
85,349 - HMPREF1058_RS05765 0.89 +0.9
85,353 - HMPREF1058_RS05765 0.89 -0.4
85,444 - +1.3
85,444 - +0.2
85,455 + -0.4
85,463 + -0.5
85,467 + +1.8
85,468 - -0.4
85,468 - +1.2
85,468 - +0.7
85,596 + -1.3
85,639 + -0.3
85,649 - +1.5
85,685 - +0.5
85,693 - +2.0
85,731 + HMPREF1058_RS05760 0.16 +0.9
85,843 + HMPREF1058_RS05760 0.39 -0.5
85,902 + HMPREF1058_RS05760 0.51 -1.3
85,903 - +0.2
85,950 + HMPREF1058_RS05760 0.61 +1.3
85,969 + HMPREF1058_RS05760 0.65 +0.9
85,970 - HMPREF1058_RS05760 0.65 -1.1
86,011 + HMPREF1058_RS05760 0.73 +0.0
86,031 + HMPREF1058_RS05760 0.77 +0.2
86,057 - HMPREF1058_RS05760 0.83 -0.3
86,119 - +0.9
86,122 + -0.2
86,219 - +0.9
86,298 + -0.8
86,299 - -0.7
86,299 - -0.4
86,300 + -0.5
86,301 - -0.1

Or see this region's nucleotide sequence