Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05440 and HMPREF1058_RS05435 are separated by 102 nucleotides HMPREF1058_RS05435 and HMPREF1058_RS05430 are separated by 50 nucleotides HMPREF1058_RS05430 and HMPREF1058_RS05425 are separated by 28 nucleotides
HMPREF1058_RS05440: HMPREF1058_RS05440 - ferritin, at 166,523 to 166,975
_RS05440
HMPREF1058_RS05435: HMPREF1058_RS05435 - MarC family protein, at 167,078 to 167,725
_RS05435
HMPREF1058_RS05430: HMPREF1058_RS05430 - ferritin, at 167,776 to 168,258
_RS05430
HMPREF1058_RS05425: HMPREF1058_RS05425 - class I fructose-bisphosphate aldolase, at 168,287 to 169,336
_RS05425
Position (kb) 167
168
169 Strain fitness (log2 ratio) -2
-1
0
1
2 at 166.805 kb on + strand, within HMPREF1058_RS05440 at 166.809 kb on + strand at 166.810 kb on - strand, within HMPREF1058_RS05440 at 166.822 kb on - strand, within HMPREF1058_RS05440 at 166.839 kb on + strand, within HMPREF1058_RS05440 at 166.840 kb on - strand, within HMPREF1058_RS05440 at 166.898 kb on - strand, within HMPREF1058_RS05440 at 166.905 kb on + strand, within HMPREF1058_RS05440 at 166.905 kb on + strand, within HMPREF1058_RS05440 at 166.906 kb on - strand, within HMPREF1058_RS05440 at 166.997 kb on - strand at 167.050 kb on - strand at 167.050 kb on - strand at 167.050 kb on - strand at 167.063 kb on - strand at 167.067 kb on + strand at 167.083 kb on + strand at 167.085 kb on + strand at 167.085 kb on + strand at 167.086 kb on - strand at 167.094 kb on - strand at 167.095 kb on + strand at 167.095 kb on + strand at 167.096 kb on - strand at 167.096 kb on - strand at 167.096 kb on - strand at 167.097 kb on + strand at 167.097 kb on + strand at 167.218 kb on + strand, within HMPREF1058_RS05435 at 167.230 kb on + strand, within HMPREF1058_RS05435 at 167.230 kb on + strand, within HMPREF1058_RS05435 at 167.239 kb on - strand, within HMPREF1058_RS05435 at 167.318 kb on - strand, within HMPREF1058_RS05435 at 167.344 kb on + strand, within HMPREF1058_RS05435 at 167.345 kb on - strand, within HMPREF1058_RS05435 at 167.410 kb on + strand, within HMPREF1058_RS05435 at 167.472 kb on + strand, within HMPREF1058_RS05435 at 167.514 kb on + strand, within HMPREF1058_RS05435 at 167.736 kb on + strand at 167.825 kb on + strand, within HMPREF1058_RS05430 at 167.847 kb on - strand, within HMPREF1058_RS05430 at 167.936 kb on - strand, within HMPREF1058_RS05430 at 167.951 kb on - strand, within HMPREF1058_RS05430 at 168.093 kb on - strand, within HMPREF1058_RS05430 at 168.174 kb on - strand, within HMPREF1058_RS05430 at 168.225 kb on + strand at 168.257 kb on - strand at 168.284 kb on - strand at 168.304 kb on - strand at 168.327 kb on - strand at 168.343 kb on + strand at 168.364 kb on + strand at 168.390 kb on + strand at 168.391 kb on - strand at 168.395 kb on - strand, within HMPREF1058_RS05425 at 168.421 kb on + strand, within HMPREF1058_RS05425 at 168.422 kb on - strand, within HMPREF1058_RS05425 at 168.422 kb on - strand, within HMPREF1058_RS05425 at 168.423 kb on + strand, within HMPREF1058_RS05425 at 168.424 kb on - strand, within HMPREF1058_RS05425 at 168.514 kb on - strand, within HMPREF1058_RS05425 at 168.514 kb on - strand, within HMPREF1058_RS05425 at 168.646 kb on + strand, within HMPREF1058_RS05425 at 168.647 kb on - strand, within HMPREF1058_RS05425 at 168.823 kb on - strand, within HMPREF1058_RS05425 at 168.868 kb on + strand, within HMPREF1058_RS05425 at 168.877 kb on - strand, within HMPREF1058_RS05425 at 168.877 kb on - strand, within HMPREF1058_RS05425 at 168.885 kb on - strand, within HMPREF1058_RS05425 at 169.057 kb on + strand, within HMPREF1058_RS05425 at 169.057 kb on + strand, within HMPREF1058_RS05425 at 169.061 kb on + strand, within HMPREF1058_RS05425 at 169.207 kb on - strand, within HMPREF1058_RS05425
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 166,805 + HMPREF1058_RS05440 0.62 -1.5 166,809 + +0.7 166,810 - HMPREF1058_RS05440 0.63 -0.1 166,822 - HMPREF1058_RS05440 0.66 -1.5 166,839 + HMPREF1058_RS05440 0.70 -0.6 166,840 - HMPREF1058_RS05440 0.70 -1.1 166,898 - HMPREF1058_RS05440 0.83 -0.5 166,905 + HMPREF1058_RS05440 0.84 -0.3 166,905 + HMPREF1058_RS05440 0.84 -2.1 166,906 - HMPREF1058_RS05440 0.85 +1.4 166,997 - +0.2 167,050 - -0.3 167,050 - -0.9 167,050 - +1.3 167,063 - -0.6 167,067 + -1.0 167,083 + -1.0 167,085 + -0.1 167,085 + -0.1 167,086 - -0.6 167,094 - +1.1 167,095 + +0.5 167,095 + +1.5 167,096 - +0.2 167,096 - -0.9 167,096 - -1.6 167,097 + +0.5 167,097 + +0.6 167,218 + HMPREF1058_RS05435 0.22 -0.6 167,230 + HMPREF1058_RS05435 0.23 +0.6 167,230 + HMPREF1058_RS05435 0.23 +1.3 167,239 - HMPREF1058_RS05435 0.25 +1.1 167,318 - HMPREF1058_RS05435 0.37 -1.4 167,344 + HMPREF1058_RS05435 0.41 -0.0 167,345 - HMPREF1058_RS05435 0.41 +0.3 167,410 + HMPREF1058_RS05435 0.51 +0.1 167,472 + HMPREF1058_RS05435 0.61 +0.2 167,514 + HMPREF1058_RS05435 0.67 +1.1 167,736 + +0.7 167,825 + HMPREF1058_RS05430 0.10 +1.2 167,847 - HMPREF1058_RS05430 0.15 +0.3 167,936 - HMPREF1058_RS05430 0.33 -0.7 167,951 - HMPREF1058_RS05430 0.36 +1.2 168,093 - HMPREF1058_RS05430 0.66 +0.2 168,174 - HMPREF1058_RS05430 0.82 +1.2 168,225 + +0.1 168,257 - +2.1 168,284 - -0.4 168,304 - -2.3 168,327 - -0.0 168,343 + -0.1 168,364 + -0.9 168,390 + +0.6 168,391 - +1.6 168,395 - HMPREF1058_RS05425 0.10 -0.6 168,421 + HMPREF1058_RS05425 0.13 +0.6 168,422 - HMPREF1058_RS05425 0.13 -0.2 168,422 - HMPREF1058_RS05425 0.13 -0.2 168,423 + HMPREF1058_RS05425 0.13 -0.5 168,424 - HMPREF1058_RS05425 0.13 +0.4 168,514 - HMPREF1058_RS05425 0.22 -1.4 168,514 - HMPREF1058_RS05425 0.22 +0.9 168,646 + HMPREF1058_RS05425 0.34 -2.2 168,647 - HMPREF1058_RS05425 0.34 -2.0 168,823 - HMPREF1058_RS05425 0.51 +1.1 168,868 + HMPREF1058_RS05425 0.55 +0.5 168,877 - HMPREF1058_RS05425 0.56 +0.0 168,877 - HMPREF1058_RS05425 0.56 -1.5 168,885 - HMPREF1058_RS05425 0.57 +0.3 169,057 + HMPREF1058_RS05425 0.73 -0.7 169,057 + HMPREF1058_RS05425 0.73 -0.3 169,061 + HMPREF1058_RS05425 0.74 +0.6 169,207 - HMPREF1058_RS05425 0.88 -0.4
Or see this region's nucleotide sequence