Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS21350 and HMPREF1058_RS21355 overlap by 28 nucleotides HMPREF1058_RS21355 and HMPREF1058_RS05300 are separated by 207 nucleotides HMPREF1058_RS05300 and HMPREF1058_RS05295 are separated by 15 nucleotides
HMPREF1058_RS21350: HMPREF1058_RS21350 - type I restriction-modification system subunit M N-terminal domain-containing protein, at 192,175 to 192,675
_RS21350
HMPREF1058_RS21355: HMPREF1058_RS21355 - mobilization protein, at 192,648 to 193,073
_RS21355
HMPREF1058_RS05300: HMPREF1058_RS05300 - helix-turn-helix transcriptional regulator, at 193,281 to 193,511
_RS05300
HMPREF1058_RS05295: HMPREF1058_RS05295 - RNA-directed DNA polymerase, at 193,527 to 195,143
_RS05295
Position (kb) 193
194 Strain fitness (log2 ratio) -2
-1
0
1
2 at 192.288 kb on - strand, within HMPREF1058_RS21350 at 192.357 kb on - strand, within HMPREF1058_RS21350 at 192.430 kb on + strand, within HMPREF1058_RS21350 at 192.542 kb on + strand, within HMPREF1058_RS21350 at 192.542 kb on + strand, within HMPREF1058_RS21350 at 192.543 kb on - strand, within HMPREF1058_RS21350 at 192.543 kb on - strand, within HMPREF1058_RS21350 at 192.543 kb on - strand, within HMPREF1058_RS21350 at 192.543 kb on - strand, within HMPREF1058_RS21350 at 192.543 kb on - strand, within HMPREF1058_RS21350 at 192.598 kb on - strand, within HMPREF1058_RS21350 at 192.598 kb on - strand, within HMPREF1058_RS21350 at 192.673 kb on + strand at 192.674 kb on - strand at 192.678 kb on - strand at 192.678 kb on - strand at 192.678 kb on - strand at 192.702 kb on + strand, within HMPREF1058_RS21355 at 192.734 kb on - strand, within HMPREF1058_RS21355 at 192.734 kb on - strand, within HMPREF1058_RS21355 at 192.824 kb on + strand, within HMPREF1058_RS21355 at 192.840 kb on - strand, within HMPREF1058_RS21355 at 192.979 kb on + strand, within HMPREF1058_RS21355 at 193.035 kb on + strand at 193.036 kb on - strand at 193.036 kb on - strand at 193.058 kb on + strand at 193.089 kb on - strand at 193.089 kb on - strand at 193.094 kb on - strand at 193.147 kb on - strand at 193.151 kb on - strand at 193.262 kb on + strand at 193.273 kb on - strand at 193.275 kb on - strand at 193.295 kb on + strand at 193.315 kb on + strand, within HMPREF1058_RS05300 at 193.395 kb on - strand, within HMPREF1058_RS05300 at 193.450 kb on + strand, within HMPREF1058_RS05300 at 193.451 kb on - strand, within HMPREF1058_RS05300 at 193.469 kb on + strand, within HMPREF1058_RS05300 at 193.495 kb on + strand at 193.509 kb on + strand at 193.509 kb on + strand at 193.563 kb on - strand at 193.563 kb on - strand at 193.646 kb on - strand at 193.648 kb on + strand at 193.698 kb on + strand, within HMPREF1058_RS05295 at 193.699 kb on - strand, within HMPREF1058_RS05295 at 193.701 kb on - strand, within HMPREF1058_RS05295 at 193.787 kb on - strand, within HMPREF1058_RS05295 at 193.797 kb on + strand, within HMPREF1058_RS05295 at 193.804 kb on - strand, within HMPREF1058_RS05295 at 193.877 kb on + strand, within HMPREF1058_RS05295 at 193.880 kb on - strand, within HMPREF1058_RS05295 at 194.010 kb on + strand, within HMPREF1058_RS05295 at 194.012 kb on + strand, within HMPREF1058_RS05295 at 194.147 kb on + strand, within HMPREF1058_RS05295 at 194.197 kb on + strand, within HMPREF1058_RS05295 at 194.283 kb on - strand, within HMPREF1058_RS05295 at 194.283 kb on - strand, within HMPREF1058_RS05295 at 194.342 kb on + strand, within HMPREF1058_RS05295 at 194.366 kb on - strand, within HMPREF1058_RS05295 at 194.371 kb on - strand, within HMPREF1058_RS05295 at 194.427 kb on + strand, within HMPREF1058_RS05295 at 194.450 kb on - strand, within HMPREF1058_RS05295
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 192,288 - HMPREF1058_RS21350 0.23 +0.0 192,357 - HMPREF1058_RS21350 0.36 +0.6 192,430 + HMPREF1058_RS21350 0.51 -1.8 192,542 + HMPREF1058_RS21350 0.73 -1.2 192,542 + HMPREF1058_RS21350 0.73 -0.1 192,543 - HMPREF1058_RS21350 0.73 +1.6 192,543 - HMPREF1058_RS21350 0.73 -1.0 192,543 - HMPREF1058_RS21350 0.73 -0.1 192,543 - HMPREF1058_RS21350 0.73 +0.2 192,543 - HMPREF1058_RS21350 0.73 +0.1 192,598 - HMPREF1058_RS21350 0.84 +0.0 192,598 - HMPREF1058_RS21350 0.84 -1.0 192,673 + -1.0 192,674 - +0.2 192,678 - +0.5 192,678 - -1.0 192,678 - -0.2 192,702 + HMPREF1058_RS21355 0.13 -1.3 192,734 - HMPREF1058_RS21355 0.20 +0.3 192,734 - HMPREF1058_RS21355 0.20 -1.4 192,824 + HMPREF1058_RS21355 0.41 -2.1 192,840 - HMPREF1058_RS21355 0.45 -0.6 192,979 + HMPREF1058_RS21355 0.78 +1.0 193,035 + -2.0 193,036 - +0.5 193,036 - +0.2 193,058 + -0.4 193,089 - +0.3 193,089 - -2.3 193,094 - -1.0 193,147 - +0.3 193,151 - +1.6 193,262 + -0.5 193,273 - -0.4 193,275 - +1.0 193,295 + -0.2 193,315 + HMPREF1058_RS05300 0.15 -0.3 193,395 - HMPREF1058_RS05300 0.49 +1.7 193,450 + HMPREF1058_RS05300 0.73 +2.1 193,451 - HMPREF1058_RS05300 0.74 +0.6 193,469 + HMPREF1058_RS05300 0.81 +0.6 193,495 + +0.1 193,509 + -0.2 193,509 + +0.6 193,563 - -1.4 193,563 - +0.7 193,646 - +0.6 193,648 + +1.3 193,698 + HMPREF1058_RS05295 0.11 +0.5 193,699 - HMPREF1058_RS05295 0.11 -1.0 193,701 - HMPREF1058_RS05295 0.11 +0.3 193,787 - HMPREF1058_RS05295 0.16 -1.3 193,797 + HMPREF1058_RS05295 0.17 +0.2 193,804 - HMPREF1058_RS05295 0.17 +0.3 193,877 + HMPREF1058_RS05295 0.22 -0.3 193,880 - HMPREF1058_RS05295 0.22 -0.7 194,010 + HMPREF1058_RS05295 0.30 +0.8 194,012 + HMPREF1058_RS05295 0.30 +0.0 194,147 + HMPREF1058_RS05295 0.38 +0.5 194,197 + HMPREF1058_RS05295 0.41 -1.0 194,283 - HMPREF1058_RS05295 0.47 +0.0 194,283 - HMPREF1058_RS05295 0.47 -0.9 194,342 + HMPREF1058_RS05295 0.50 -0.8 194,366 - HMPREF1058_RS05295 0.52 +0.6 194,371 - HMPREF1058_RS05295 0.52 -0.6 194,427 + HMPREF1058_RS05295 0.56 -0.5 194,450 - HMPREF1058_RS05295 0.57 -1.1
Or see this region's nucleotide sequence