Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04750 and HMPREF1058_RS04745 are separated by 134 nucleotides
HMPREF1058_RS04750: HMPREF1058_RS04750 - hypothetical protein, at 323,048 to 323,563
_RS04750
HMPREF1058_RS04745: HMPREF1058_RS04745 - helix-turn-helix domain-containing protein, at 323,698 to 324,462
_RS04745
Position (kb) 323
324 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 322.153 kb on - strand at 322.180 kb on - strand at 322.183 kb on - strand at 322.183 kb on - strand at 322.221 kb on + strand at 322.221 kb on + strand at 322.221 kb on + strand at 322.222 kb on - strand at 322.222 kb on - strand at 322.222 kb on - strand at 322.223 kb on + strand at 322.223 kb on + strand at 322.223 kb on + strand at 322.224 kb on - strand at 322.224 kb on - strand at 322.285 kb on - strand at 322.327 kb on + strand at 322.333 kb on - strand at 322.398 kb on + strand at 322.401 kb on - strand at 322.402 kb on + strand at 322.403 kb on - strand at 322.403 kb on - strand at 322.439 kb on - strand at 322.446 kb on + strand at 322.447 kb on - strand at 322.536 kb on + strand at 322.539 kb on + strand at 322.546 kb on - strand at 322.557 kb on + strand at 322.566 kb on + strand at 322.630 kb on - strand at 322.671 kb on + strand at 322.673 kb on + strand at 322.674 kb on - strand at 322.674 kb on - strand at 322.677 kb on + strand at 322.678 kb on - strand at 322.678 kb on - strand at 322.729 kb on - strand at 322.729 kb on - strand at 322.755 kb on - strand at 322.761 kb on - strand at 322.764 kb on + strand at 322.765 kb on - strand at 322.766 kb on + strand at 322.766 kb on + strand at 322.773 kb on - strand at 322.785 kb on + strand at 322.786 kb on - strand at 322.786 kb on - strand at 322.915 kb on + strand at 322.917 kb on + strand at 322.918 kb on - strand at 322.919 kb on + strand at 322.919 kb on + strand at 322.920 kb on - strand at 322.920 kb on - strand at 322.945 kb on - strand at 323.004 kb on - strand at 323.163 kb on + strand, within HMPREF1058_RS04750 at 323.370 kb on + strand, within HMPREF1058_RS04750 at 323.370 kb on + strand, within HMPREF1058_RS04750 at 323.370 kb on + strand, within HMPREF1058_RS04750 at 323.370 kb on + strand, within HMPREF1058_RS04750 at 323.370 kb on + strand, within HMPREF1058_RS04750 at 323.371 kb on - strand, within HMPREF1058_RS04750 at 323.395 kb on - strand, within HMPREF1058_RS04750 at 323.439 kb on + strand, within HMPREF1058_RS04750 at 323.516 kb on + strand at 323.532 kb on - strand at 323.536 kb on + strand at 323.718 kb on - strand at 323.801 kb on - strand, within HMPREF1058_RS04745 at 324.235 kb on + strand, within HMPREF1058_RS04745 at 324.319 kb on + strand, within HMPREF1058_RS04745
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 322,153 - -0.2 322,180 - +1.2 322,183 - +0.1 322,183 - -0.5 322,221 + +1.5 322,221 + +0.5 322,221 + +0.5 322,222 - -1.8 322,222 - -0.5 322,222 - -0.2 322,223 + +1.2 322,223 + -0.3 322,223 + +1.6 322,224 - +0.1 322,224 - -0.1 322,285 - -2.0 322,327 + +1.2 322,333 - +3.3 322,398 + +2.0 322,401 - +0.1 322,402 + +1.1 322,403 - +0.0 322,403 - +1.0 322,439 - -0.8 322,446 + +1.9 322,447 - +2.0 322,536 + +0.6 322,539 + +0.5 322,546 - +0.2 322,557 + -1.9 322,566 + +2.2 322,630 - +0.8 322,671 + +0.4 322,673 + -0.0 322,674 - -0.6 322,674 - -0.8 322,677 + +0.7 322,678 - -0.6 322,678 - +0.3 322,729 - +0.9 322,729 - +0.2 322,755 - +0.6 322,761 - -0.8 322,764 + +0.0 322,765 - +0.9 322,766 + +0.5 322,766 + -1.0 322,773 - -0.3 322,785 + +0.4 322,786 - +0.1 322,786 - -0.1 322,915 + -0.5 322,917 + -0.9 322,918 - -1.5 322,919 + +0.5 322,919 + -0.8 322,920 - +0.2 322,920 - -0.5 322,945 - -0.3 323,004 - +0.2 323,163 + HMPREF1058_RS04750 0.22 +2.2 323,370 + HMPREF1058_RS04750 0.62 +0.8 323,370 + HMPREF1058_RS04750 0.62 -1.2 323,370 + HMPREF1058_RS04750 0.62 +0.1 323,370 + HMPREF1058_RS04750 0.62 +1.7 323,370 + HMPREF1058_RS04750 0.62 +2.0 323,371 - HMPREF1058_RS04750 0.63 +1.0 323,395 - HMPREF1058_RS04750 0.67 +0.7 323,439 + HMPREF1058_RS04750 0.76 +1.1 323,516 + +1.6 323,532 - -1.0 323,536 + -1.2 323,718 - -0.8 323,801 - HMPREF1058_RS04745 0.13 -0.1 324,235 + HMPREF1058_RS04745 0.70 -0.3 324,319 + HMPREF1058_RS04745 0.81 +0.7
Or see this region's nucleotide sequence