Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04690 and HMPREF1058_RS04685 are separated by 205 nucleotides HMPREF1058_RS04685 and HMPREF1058_RS04680 are separated by 35 nucleotides
HMPREF1058_RS04690: HMPREF1058_RS04690 - cation:proton antiporter, at 331,674 to 333,941
_RS04690
HMPREF1058_RS04685: HMPREF1058_RS04685 - glycine cleavage system aminomethyltransferase GcvT, at 334,147 to 335,232
_RS04685
HMPREF1058_RS04680: HMPREF1058_RS04680 - peptidase T, at 335,268 to 336,488
_RS04680
Position (kb) 334
335
336 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 333.153 kb on - strand, within HMPREF1058_RS04690 at 333.182 kb on + strand, within HMPREF1058_RS04690 at 333.194 kb on + strand, within HMPREF1058_RS04690 at 333.240 kb on + strand, within HMPREF1058_RS04690 at 333.241 kb on - strand, within HMPREF1058_RS04690 at 333.331 kb on + strand, within HMPREF1058_RS04690 at 333.335 kb on + strand, within HMPREF1058_RS04690 at 333.336 kb on - strand, within HMPREF1058_RS04690 at 333.336 kb on - strand, within HMPREF1058_RS04690 at 333.354 kb on + strand, within HMPREF1058_RS04690 at 333.355 kb on - strand, within HMPREF1058_RS04690 at 333.355 kb on - strand, within HMPREF1058_RS04690 at 333.383 kb on + strand, within HMPREF1058_RS04690 at 333.383 kb on + strand, within HMPREF1058_RS04690 at 333.383 kb on + strand, within HMPREF1058_RS04690 at 333.384 kb on - strand, within HMPREF1058_RS04690 at 333.384 kb on - strand, within HMPREF1058_RS04690 at 333.386 kb on - strand, within HMPREF1058_RS04690 at 333.388 kb on - strand, within HMPREF1058_RS04690 at 333.437 kb on + strand, within HMPREF1058_RS04690 at 333.437 kb on + strand, within HMPREF1058_RS04690 at 333.437 kb on + strand, within HMPREF1058_RS04690 at 333.438 kb on - strand, within HMPREF1058_RS04690 at 333.459 kb on + strand, within HMPREF1058_RS04690 at 333.459 kb on + strand, within HMPREF1058_RS04690 at 333.460 kb on - strand, within HMPREF1058_RS04690 at 333.538 kb on + strand, within HMPREF1058_RS04690 at 333.542 kb on + strand, within HMPREF1058_RS04690 at 333.569 kb on + strand, within HMPREF1058_RS04690 at 333.636 kb on + strand, within HMPREF1058_RS04690 at 333.649 kb on - strand, within HMPREF1058_RS04690 at 333.649 kb on - strand, within HMPREF1058_RS04690 at 333.649 kb on - strand, within HMPREF1058_RS04690 at 333.656 kb on + strand, within HMPREF1058_RS04690 at 333.761 kb on + strand at 333.761 kb on + strand at 333.761 kb on + strand at 333.761 kb on + strand at 333.762 kb on - strand at 333.918 kb on + strand at 333.941 kb on + strand at 333.941 kb on + strand at 333.945 kb on + strand at 333.988 kb on + strand at 334.001 kb on - strand at 334.001 kb on - strand at 334.055 kb on + strand at 334.055 kb on + strand at 334.056 kb on - strand at 334.068 kb on + strand at 334.068 kb on + strand at 334.101 kb on - strand at 334.168 kb on + strand at 334.172 kb on - strand at 334.211 kb on - strand at 334.223 kb on - strand at 334.233 kb on - strand at 334.297 kb on + strand, within HMPREF1058_RS04685 at 334.306 kb on + strand, within HMPREF1058_RS04685 at 334.328 kb on - strand, within HMPREF1058_RS04685 at 334.494 kb on + strand, within HMPREF1058_RS04685 at 334.495 kb on - strand, within HMPREF1058_RS04685 at 334.495 kb on - strand, within HMPREF1058_RS04685 at 334.495 kb on - strand, within HMPREF1058_RS04685 at 334.548 kb on + strand, within HMPREF1058_RS04685 at 334.570 kb on - strand, within HMPREF1058_RS04685 at 334.575 kb on + strand, within HMPREF1058_RS04685 at 334.644 kb on - strand, within HMPREF1058_RS04685 at 334.730 kb on + strand, within HMPREF1058_RS04685 at 334.731 kb on - strand, within HMPREF1058_RS04685 at 334.914 kb on - strand at 334.934 kb on + strand, within HMPREF1058_RS04685 at 334.935 kb on - strand, within HMPREF1058_RS04685 at 334.935 kb on - strand, within HMPREF1058_RS04685 at 334.936 kb on + strand, within HMPREF1058_RS04685 at 334.936 kb on + strand, within HMPREF1058_RS04685 at 334.983 kb on + strand, within HMPREF1058_RS04685 at 334.984 kb on - strand, within HMPREF1058_RS04685 at 334.985 kb on + strand, within HMPREF1058_RS04685 at 335.104 kb on + strand, within HMPREF1058_RS04685 at 335.117 kb on - strand, within HMPREF1058_RS04685 at 335.117 kb on - strand, within HMPREF1058_RS04685 at 335.148 kb on - strand at 335.154 kb on + strand at 335.161 kb on - strand at 335.163 kb on + strand at 335.164 kb on - strand at 335.164 kb on - strand at 335.238 kb on + strand at 335.239 kb on - strand at 335.252 kb on - strand at 335.265 kb on + strand at 335.270 kb on - strand at 335.379 kb on - strand at 335.447 kb on + strand, within HMPREF1058_RS04680 at 335.448 kb on - strand, within HMPREF1058_RS04680 at 335.448 kb on - strand, within HMPREF1058_RS04680 at 335.531 kb on - strand, within HMPREF1058_RS04680 at 335.534 kb on - strand, within HMPREF1058_RS04680 at 335.579 kb on + strand, within HMPREF1058_RS04680 at 335.606 kb on + strand, within HMPREF1058_RS04680 at 335.652 kb on + strand, within HMPREF1058_RS04680 at 335.652 kb on + strand, within HMPREF1058_RS04680 at 335.653 kb on - strand, within HMPREF1058_RS04680 at 335.654 kb on + strand, within HMPREF1058_RS04680 at 335.654 kb on + strand, within HMPREF1058_RS04680 at 335.654 kb on + strand, within HMPREF1058_RS04680 at 335.655 kb on - strand, within HMPREF1058_RS04680 at 335.656 kb on + strand, within HMPREF1058_RS04680 at 335.657 kb on - strand, within HMPREF1058_RS04680 at 335.667 kb on - strand, within HMPREF1058_RS04680 at 335.676 kb on + strand, within HMPREF1058_RS04680 at 335.726 kb on + strand, within HMPREF1058_RS04680 at 335.727 kb on - strand, within HMPREF1058_RS04680 at 335.820 kb on + strand, within HMPREF1058_RS04680 at 335.886 kb on + strand, within HMPREF1058_RS04680 at 335.907 kb on - strand, within HMPREF1058_RS04680 at 335.907 kb on - strand, within HMPREF1058_RS04680 at 335.907 kb on - strand, within HMPREF1058_RS04680 at 336.100 kb on - strand, within HMPREF1058_RS04680 at 336.105 kb on - strand, within HMPREF1058_RS04680 at 336.157 kb on - strand, within HMPREF1058_RS04680 at 336.159 kb on - strand, within HMPREF1058_RS04680 at 336.159 kb on - strand, within HMPREF1058_RS04680 at 336.159 kb on - strand, within HMPREF1058_RS04680 at 336.177 kb on + strand, within HMPREF1058_RS04680 at 336.180 kb on + strand, within HMPREF1058_RS04680 at 336.181 kb on - strand, within HMPREF1058_RS04680
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 333,153 - HMPREF1058_RS04690 0.65 -0.5 333,182 + HMPREF1058_RS04690 0.66 +2.4 333,194 + HMPREF1058_RS04690 0.67 -0.2 333,240 + HMPREF1058_RS04690 0.69 -0.6 333,241 - HMPREF1058_RS04690 0.69 +0.3 333,331 + HMPREF1058_RS04690 0.73 +2.0 333,335 + HMPREF1058_RS04690 0.73 -1.4 333,336 - HMPREF1058_RS04690 0.73 -0.6 333,336 - HMPREF1058_RS04690 0.73 -2.1 333,354 + HMPREF1058_RS04690 0.74 -1.0 333,355 - HMPREF1058_RS04690 0.74 +0.4 333,355 - HMPREF1058_RS04690 0.74 -1.0 333,383 + HMPREF1058_RS04690 0.75 +0.4 333,383 + HMPREF1058_RS04690 0.75 -0.5 333,383 + HMPREF1058_RS04690 0.75 -0.5 333,384 - HMPREF1058_RS04690 0.75 -0.8 333,384 - HMPREF1058_RS04690 0.75 +1.0 333,386 - HMPREF1058_RS04690 0.75 -0.4 333,388 - HMPREF1058_RS04690 0.76 -2.7 333,437 + HMPREF1058_RS04690 0.78 +2.0 333,437 + HMPREF1058_RS04690 0.78 +0.0 333,437 + HMPREF1058_RS04690 0.78 -1.3 333,438 - HMPREF1058_RS04690 0.78 -1.1 333,459 + HMPREF1058_RS04690 0.79 -0.2 333,459 + HMPREF1058_RS04690 0.79 -0.5 333,460 - HMPREF1058_RS04690 0.79 +0.6 333,538 + HMPREF1058_RS04690 0.82 +0.4 333,542 + HMPREF1058_RS04690 0.82 -1.0 333,569 + HMPREF1058_RS04690 0.84 -1.1 333,636 + HMPREF1058_RS04690 0.87 -1.4 333,649 - HMPREF1058_RS04690 0.87 -1.8 333,649 - HMPREF1058_RS04690 0.87 -0.5 333,649 - HMPREF1058_RS04690 0.87 +3.0 333,656 + HMPREF1058_RS04690 0.87 -0.1 333,761 + +1.0 333,761 + -2.9 333,761 + -0.8 333,761 + -0.1 333,762 - +0.0 333,918 + +1.0 333,941 + -1.0 333,941 + -2.8 333,945 + +1.0 333,988 + +0.0 334,001 - -0.5 334,001 - -0.8 334,055 + +0.2 334,055 + -0.4 334,056 - +1.4 334,068 + +0.6 334,068 + +0.7 334,101 - -0.6 334,168 + +2.0 334,172 - +0.8 334,211 - +1.0 334,223 - +0.4 334,233 - +3.5 334,297 + HMPREF1058_RS04685 0.14 +1.0 334,306 + HMPREF1058_RS04685 0.15 +0.2 334,328 - HMPREF1058_RS04685 0.17 +1.1 334,494 + HMPREF1058_RS04685 0.32 +0.6 334,495 - HMPREF1058_RS04685 0.32 +1.1 334,495 - HMPREF1058_RS04685 0.32 +0.5 334,495 - HMPREF1058_RS04685 0.32 -0.0 334,548 + HMPREF1058_RS04685 0.37 +2.0 334,570 - HMPREF1058_RS04685 0.39 +1.2 334,575 + HMPREF1058_RS04685 0.39 +1.3 334,644 - HMPREF1058_RS04685 0.46 +1.4 334,730 + HMPREF1058_RS04685 0.54 +2.5 334,731 - HMPREF1058_RS04685 0.54 +2.0 334,914 - +4.4 334,934 + HMPREF1058_RS04685 0.72 +1.5 334,935 - HMPREF1058_RS04685 0.73 +0.8 334,935 - HMPREF1058_RS04685 0.73 +1.4 334,936 + HMPREF1058_RS04685 0.73 +1.1 334,936 + HMPREF1058_RS04685 0.73 +2.0 334,983 + HMPREF1058_RS04685 0.77 -0.2 334,984 - HMPREF1058_RS04685 0.77 +2.1 334,985 + HMPREF1058_RS04685 0.77 +0.1 335,104 + HMPREF1058_RS04685 0.88 +1.0 335,117 - HMPREF1058_RS04685 0.89 +0.4 335,117 - HMPREF1058_RS04685 0.89 +0.4 335,148 - +0.9 335,154 + +1.6 335,161 - +0.3 335,163 + +0.7 335,164 - +1.7 335,164 - +0.7 335,238 + -0.2 335,239 - +0.1 335,252 - -0.6 335,265 + +1.6 335,270 - -0.9 335,379 - +0.0 335,447 + HMPREF1058_RS04680 0.15 +0.8 335,448 - HMPREF1058_RS04680 0.15 +0.5 335,448 - HMPREF1058_RS04680 0.15 -1.1 335,531 - HMPREF1058_RS04680 0.22 +0.3 335,534 - HMPREF1058_RS04680 0.22 +0.3 335,579 + HMPREF1058_RS04680 0.25 +1.4 335,606 + HMPREF1058_RS04680 0.28 +1.5 335,652 + HMPREF1058_RS04680 0.31 +0.5 335,652 + HMPREF1058_RS04680 0.31 +0.5 335,653 - HMPREF1058_RS04680 0.32 -0.5 335,654 + HMPREF1058_RS04680 0.32 +0.9 335,654 + HMPREF1058_RS04680 0.32 -0.1 335,654 + HMPREF1058_RS04680 0.32 -0.8 335,655 - HMPREF1058_RS04680 0.32 -0.1 335,656 + HMPREF1058_RS04680 0.32 +1.7 335,657 - HMPREF1058_RS04680 0.32 +0.1 335,667 - HMPREF1058_RS04680 0.33 -0.0 335,676 + HMPREF1058_RS04680 0.33 +2.1 335,726 + HMPREF1058_RS04680 0.38 +0.2 335,727 - HMPREF1058_RS04680 0.38 +1.0 335,820 + HMPREF1058_RS04680 0.45 +0.5 335,886 + HMPREF1058_RS04680 0.51 -0.2 335,907 - HMPREF1058_RS04680 0.52 -1.1 335,907 - HMPREF1058_RS04680 0.52 -0.2 335,907 - HMPREF1058_RS04680 0.52 +1.1 336,100 - HMPREF1058_RS04680 0.68 +0.3 336,105 - HMPREF1058_RS04680 0.69 -0.6 336,157 - HMPREF1058_RS04680 0.73 +0.1 336,159 - HMPREF1058_RS04680 0.73 -0.1 336,159 - HMPREF1058_RS04680 0.73 +0.1 336,159 - HMPREF1058_RS04680 0.73 +0.2 336,177 + HMPREF1058_RS04680 0.74 +0.5 336,180 + HMPREF1058_RS04680 0.75 -0.5 336,181 - HMPREF1058_RS04680 0.75 +0.2
Or see this region's nucleotide sequence