Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04295 and HMPREF1058_RS04290 are separated by 108 nucleotides HMPREF1058_RS04290 and HMPREF1058_RS04285 are separated by 236 nucleotides
HMPREF1058_RS04295: HMPREF1058_RS04295 - 3-phosphoglycerate dehydrogenase, at 72,111 to 73,031
_RS04295
HMPREF1058_RS04290: HMPREF1058_RS04290 - DUF1015 domain-containing protein, at 73,140 to 74,387
_RS04290
HMPREF1058_RS04285: HMPREF1058_RS04285 - DMT family transporter, at 74,624 to 75,538
_RS04285
Position (kb) 73
74
75 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 72.158 kb on - strand at 72.158 kb on - strand at 72.217 kb on - strand, within HMPREF1058_RS04295 at 72.235 kb on + strand, within HMPREF1058_RS04295 at 72.236 kb on - strand, within HMPREF1058_RS04295 at 72.236 kb on - strand, within HMPREF1058_RS04295 at 72.281 kb on + strand, within HMPREF1058_RS04295 at 72.331 kb on + strand, within HMPREF1058_RS04295 at 72.332 kb on - strand, within HMPREF1058_RS04295 at 72.581 kb on + strand, within HMPREF1058_RS04295 at 72.664 kb on - strand at 72.678 kb on - strand, within HMPREF1058_RS04295 at 72.729 kb on + strand, within HMPREF1058_RS04295 at 72.763 kb on + strand, within HMPREF1058_RS04295 at 72.838 kb on + strand, within HMPREF1058_RS04295 at 72.844 kb on - strand, within HMPREF1058_RS04295 at 72.844 kb on - strand, within HMPREF1058_RS04295 at 73.025 kb on + strand at 73.026 kb on - strand at 73.034 kb on - strand at 73.077 kb on - strand at 73.078 kb on + strand at 73.078 kb on + strand at 73.078 kb on + strand at 73.079 kb on - strand at 73.084 kb on - strand at 73.147 kb on + strand at 73.151 kb on - strand at 73.272 kb on + strand, within HMPREF1058_RS04290 at 73.272 kb on + strand, within HMPREF1058_RS04290 at 73.328 kb on + strand, within HMPREF1058_RS04290 at 73.329 kb on - strand, within HMPREF1058_RS04290 at 73.333 kb on + strand, within HMPREF1058_RS04290 at 73.333 kb on + strand, within HMPREF1058_RS04290 at 73.336 kb on - strand, within HMPREF1058_RS04290 at 73.408 kb on - strand, within HMPREF1058_RS04290 at 73.411 kb on - strand, within HMPREF1058_RS04290 at 73.415 kb on - strand, within HMPREF1058_RS04290 at 73.632 kb on - strand, within HMPREF1058_RS04290 at 73.715 kb on + strand, within HMPREF1058_RS04290 at 73.717 kb on + strand, within HMPREF1058_RS04290 at 73.852 kb on - strand, within HMPREF1058_RS04290 at 73.857 kb on + strand, within HMPREF1058_RS04290 at 73.857 kb on + strand, within HMPREF1058_RS04290 at 73.906 kb on - strand, within HMPREF1058_RS04290 at 74.004 kb on + strand, within HMPREF1058_RS04290 at 74.083 kb on - strand, within HMPREF1058_RS04290 at 74.194 kb on + strand, within HMPREF1058_RS04290 at 74.316 kb on - strand at 74.375 kb on + strand at 74.463 kb on - strand at 74.498 kb on + strand at 74.515 kb on + strand at 74.515 kb on + strand at 74.583 kb on + strand at 74.630 kb on - strand at 74.641 kb on + strand at 74.641 kb on + strand at 74.711 kb on + strand at 74.713 kb on + strand at 74.766 kb on + strand, within HMPREF1058_RS04285 at 74.766 kb on + strand, within HMPREF1058_RS04285 at 74.767 kb on - strand, within HMPREF1058_RS04285 at 74.773 kb on - strand, within HMPREF1058_RS04285 at 74.775 kb on + strand, within HMPREF1058_RS04285 at 74.775 kb on + strand, within HMPREF1058_RS04285 at 74.775 kb on + strand, within HMPREF1058_RS04285 at 74.775 kb on + strand, within HMPREF1058_RS04285 at 74.892 kb on - strand, within HMPREF1058_RS04285 at 74.893 kb on + strand, within HMPREF1058_RS04285 at 74.893 kb on + strand, within HMPREF1058_RS04285 at 74.897 kb on + strand, within HMPREF1058_RS04285 at 74.954 kb on - strand, within HMPREF1058_RS04285 at 74.960 kb on - strand, within HMPREF1058_RS04285 at 74.970 kb on + strand, within HMPREF1058_RS04285 at 75.082 kb on + strand, within HMPREF1058_RS04285 at 75.115 kb on + strand, within HMPREF1058_RS04285 at 75.119 kb on + strand, within HMPREF1058_RS04285 at 75.120 kb on - strand, within HMPREF1058_RS04285 at 75.121 kb on + strand, within HMPREF1058_RS04285 at 75.122 kb on - strand, within HMPREF1058_RS04285 at 75.123 kb on + strand, within HMPREF1058_RS04285 at 75.179 kb on + strand, within HMPREF1058_RS04285 at 75.179 kb on + strand, within HMPREF1058_RS04285 at 75.206 kb on + strand, within HMPREF1058_RS04285 at 75.229 kb on + strand, within HMPREF1058_RS04285 at 75.302 kb on - strand, within HMPREF1058_RS04285 at 75.335 kb on + strand, within HMPREF1058_RS04285 at 75.335 kb on + strand, within HMPREF1058_RS04285 at 75.336 kb on - strand, within HMPREF1058_RS04285
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 72,158 - -1.6 72,158 - -1.0 72,217 - HMPREF1058_RS04295 0.12 +0.0 72,235 + HMPREF1058_RS04295 0.13 -4.2 72,236 - HMPREF1058_RS04295 0.14 -4.9 72,236 - HMPREF1058_RS04295 0.14 +2.0 72,281 + HMPREF1058_RS04295 0.18 -1.6 72,331 + HMPREF1058_RS04295 0.24 -2.4 72,332 - HMPREF1058_RS04295 0.24 -0.6 72,581 + HMPREF1058_RS04295 0.51 -3.4 72,664 - -0.3 72,678 - HMPREF1058_RS04295 0.62 -3.3 72,729 + HMPREF1058_RS04295 0.67 -3.0 72,763 + HMPREF1058_RS04295 0.71 -2.9 72,838 + HMPREF1058_RS04295 0.79 +2.0 72,844 - HMPREF1058_RS04295 0.80 -1.2 72,844 - HMPREF1058_RS04295 0.80 +0.0 73,025 + +0.1 73,026 - +2.0 73,034 - +1.3 73,077 - +2.6 73,078 + +1.0 73,078 + +0.6 73,078 + -1.0 73,079 - +2.7 73,084 - +1.7 73,147 + +0.7 73,151 - +1.5 73,272 + HMPREF1058_RS04290 0.11 +1.2 73,272 + HMPREF1058_RS04290 0.11 +1.6 73,328 + HMPREF1058_RS04290 0.15 +2.7 73,329 - HMPREF1058_RS04290 0.15 +1.0 73,333 + HMPREF1058_RS04290 0.15 +1.0 73,333 + HMPREF1058_RS04290 0.15 +1.8 73,336 - HMPREF1058_RS04290 0.16 +0.2 73,408 - HMPREF1058_RS04290 0.21 +1.0 73,411 - HMPREF1058_RS04290 0.22 +0.6 73,415 - HMPREF1058_RS04290 0.22 +1.2 73,632 - HMPREF1058_RS04290 0.39 +2.3 73,715 + HMPREF1058_RS04290 0.46 +1.7 73,717 + HMPREF1058_RS04290 0.46 +2.7 73,852 - HMPREF1058_RS04290 0.57 +2.3 73,857 + HMPREF1058_RS04290 0.57 +1.7 73,857 + HMPREF1058_RS04290 0.57 +1.1 73,906 - HMPREF1058_RS04290 0.61 +0.8 74,004 + HMPREF1058_RS04290 0.69 +0.8 74,083 - HMPREF1058_RS04290 0.76 +2.5 74,194 + HMPREF1058_RS04290 0.84 +1.6 74,316 - +2.5 74,375 + +1.7 74,463 - +1.7 74,498 + +0.4 74,515 + -1.4 74,515 + -0.6 74,583 + -1.5 74,630 - +0.3 74,641 + -0.5 74,641 + -0.2 74,711 + +0.6 74,713 + +0.0 74,766 + HMPREF1058_RS04285 0.16 +0.6 74,766 + HMPREF1058_RS04285 0.16 -1.1 74,767 - HMPREF1058_RS04285 0.16 -0.7 74,773 - HMPREF1058_RS04285 0.16 +1.7 74,775 + HMPREF1058_RS04285 0.17 +0.6 74,775 + HMPREF1058_RS04285 0.17 -0.1 74,775 + HMPREF1058_RS04285 0.17 -0.3 74,775 + HMPREF1058_RS04285 0.17 +0.1 74,892 - HMPREF1058_RS04285 0.29 -0.4 74,893 + HMPREF1058_RS04285 0.29 +0.2 74,893 + HMPREF1058_RS04285 0.29 -0.5 74,897 + HMPREF1058_RS04285 0.30 +0.6 74,954 - HMPREF1058_RS04285 0.36 +0.2 74,960 - HMPREF1058_RS04285 0.37 +0.3 74,970 + HMPREF1058_RS04285 0.38 +0.5 75,082 + HMPREF1058_RS04285 0.50 +0.3 75,115 + HMPREF1058_RS04285 0.54 +1.6 75,119 + HMPREF1058_RS04285 0.54 -0.2 75,120 - HMPREF1058_RS04285 0.54 +0.0 75,121 + HMPREF1058_RS04285 0.54 +1.8 75,122 - HMPREF1058_RS04285 0.54 +0.6 75,123 + HMPREF1058_RS04285 0.55 +0.3 75,179 + HMPREF1058_RS04285 0.61 +0.2 75,179 + HMPREF1058_RS04285 0.61 -1.5 75,206 + HMPREF1058_RS04285 0.64 +0.1 75,229 + HMPREF1058_RS04285 0.66 -1.6 75,302 - HMPREF1058_RS04285 0.74 +0.0 75,335 + HMPREF1058_RS04285 0.78 -1.8 75,335 + HMPREF1058_RS04285 0.78 +0.4 75,336 - HMPREF1058_RS04285 0.78 +2.0
Or see this region's nucleotide sequence