Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04140 and HMPREF1058_RS04135 are separated by 12 nucleotides HMPREF1058_RS04135 and HMPREF1058_RS04130 are separated by 59 nucleotides HMPREF1058_RS04130 and HMPREF1058_RS04125 are separated by 236 nucleotides
HMPREF1058_RS04140: HMPREF1058_RS04140 - DMT family transporter, at 110,330 to 111,238
_RS04140
HMPREF1058_RS04135: HMPREF1058_RS04135 - sugar O-acetyltransferase, at 111,251 to 111,802
_RS04135
HMPREF1058_RS04130: HMPREF1058_RS04130 - winged helix-turn-helix domain-containing protein, at 111,862 to 112,080
_RS04130
HMPREF1058_RS04125: HMPREF1058_RS04125 - type I methionyl aminopeptidase, at 112,317 to 113,171
_RS04125
Position (kb) 111
112
113 Strain fitness (log2 ratio) -2
-1
0
1
2 at 110.977 kb on + strand, within HMPREF1058_RS04140 at 110.978 kb on - strand, within HMPREF1058_RS04140 at 110.978 kb on - strand, within HMPREF1058_RS04140 at 111.070 kb on - strand, within HMPREF1058_RS04140 at 111.086 kb on - strand, within HMPREF1058_RS04140 at 111.089 kb on + strand, within HMPREF1058_RS04140 at 111.106 kb on - strand, within HMPREF1058_RS04140 at 111.144 kb on + strand, within HMPREF1058_RS04140 at 111.144 kb on + strand, within HMPREF1058_RS04140 at 111.175 kb on + strand at 111.191 kb on + strand at 111.192 kb on - strand at 111.217 kb on + strand at 111.250 kb on + strand at 111.325 kb on - strand, within HMPREF1058_RS04135 at 111.364 kb on + strand, within HMPREF1058_RS04135 at 111.364 kb on + strand, within HMPREF1058_RS04135 at 111.369 kb on - strand, within HMPREF1058_RS04135 at 111.369 kb on - strand, within HMPREF1058_RS04135 at 111.369 kb on - strand, within HMPREF1058_RS04135 at 111.369 kb on - strand, within HMPREF1058_RS04135 at 111.403 kb on - strand, within HMPREF1058_RS04135 at 111.447 kb on - strand, within HMPREF1058_RS04135 at 111.524 kb on + strand, within HMPREF1058_RS04135 at 111.524 kb on + strand, within HMPREF1058_RS04135 at 111.525 kb on - strand, within HMPREF1058_RS04135 at 111.526 kb on + strand, within HMPREF1058_RS04135 at 111.526 kb on + strand, within HMPREF1058_RS04135 at 111.526 kb on + strand, within HMPREF1058_RS04135 at 111.527 kb on - strand, within HMPREF1058_RS04135 at 111.527 kb on - strand at 111.527 kb on - strand, within HMPREF1058_RS04135 at 111.535 kb on - strand, within HMPREF1058_RS04135 at 111.544 kb on + strand, within HMPREF1058_RS04135 at 111.544 kb on + strand, within HMPREF1058_RS04135 at 111.545 kb on - strand, within HMPREF1058_RS04135 at 111.572 kb on + strand, within HMPREF1058_RS04135 at 111.572 kb on + strand, within HMPREF1058_RS04135 at 111.572 kb on + strand, within HMPREF1058_RS04135 at 111.573 kb on - strand, within HMPREF1058_RS04135 at 111.573 kb on - strand, within HMPREF1058_RS04135 at 111.592 kb on - strand, within HMPREF1058_RS04135 at 111.596 kb on + strand, within HMPREF1058_RS04135 at 111.600 kb on + strand, within HMPREF1058_RS04135 at 111.769 kb on + strand at 111.818 kb on - strand at 111.822 kb on - strand at 111.843 kb on - strand at 111.872 kb on + strand at 111.930 kb on + strand, within HMPREF1058_RS04130 at 111.953 kb on - strand, within HMPREF1058_RS04130 at 112.007 kb on + strand at 112.020 kb on + strand, within HMPREF1058_RS04130 at 112.501 kb on + strand, within HMPREF1058_RS04125 at 112.501 kb on + strand, within HMPREF1058_RS04125 at 112.562 kb on + strand, within HMPREF1058_RS04125 at 112.599 kb on + strand, within HMPREF1058_RS04125 at 112.691 kb on + strand, within HMPREF1058_RS04125 at 112.709 kb on + strand, within HMPREF1058_RS04125 at 112.802 kb on + strand, within HMPREF1058_RS04125
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 110,977 + HMPREF1058_RS04140 0.71 -0.2 110,978 - HMPREF1058_RS04140 0.71 +1.0 110,978 - HMPREF1058_RS04140 0.71 +1.4 111,070 - HMPREF1058_RS04140 0.81 +0.3 111,086 - HMPREF1058_RS04140 0.83 +2.0 111,089 + HMPREF1058_RS04140 0.83 -1.0 111,106 - HMPREF1058_RS04140 0.85 +0.3 111,144 + HMPREF1058_RS04140 0.90 +0.4 111,144 + HMPREF1058_RS04140 0.90 -0.1 111,175 + -1.4 111,191 + -0.5 111,192 - -0.7 111,217 + +0.1 111,250 + +0.2 111,325 - HMPREF1058_RS04135 0.13 -0.3 111,364 + HMPREF1058_RS04135 0.20 -0.2 111,364 + HMPREF1058_RS04135 0.20 -1.0 111,369 - HMPREF1058_RS04135 0.21 +0.8 111,369 - HMPREF1058_RS04135 0.21 +0.1 111,369 - HMPREF1058_RS04135 0.21 -0.4 111,369 - HMPREF1058_RS04135 0.21 -2.4 111,403 - HMPREF1058_RS04135 0.28 +0.1 111,447 - HMPREF1058_RS04135 0.36 +0.3 111,524 + HMPREF1058_RS04135 0.49 -0.2 111,524 + HMPREF1058_RS04135 0.49 -1.4 111,525 - HMPREF1058_RS04135 0.50 -0.4 111,526 + HMPREF1058_RS04135 0.50 +1.4 111,526 + HMPREF1058_RS04135 0.50 -0.5 111,526 + HMPREF1058_RS04135 0.50 -1.6 111,527 - HMPREF1058_RS04135 0.50 -1.0 111,527 - +0.1 111,527 - HMPREF1058_RS04135 0.50 -0.4 111,535 - HMPREF1058_RS04135 0.51 -1.4 111,544 + HMPREF1058_RS04135 0.53 -0.7 111,544 + HMPREF1058_RS04135 0.53 +0.3 111,545 - HMPREF1058_RS04135 0.53 -0.9 111,572 + HMPREF1058_RS04135 0.58 +0.2 111,572 + HMPREF1058_RS04135 0.58 -0.4 111,572 + HMPREF1058_RS04135 0.58 +0.8 111,573 - HMPREF1058_RS04135 0.58 -2.6 111,573 - HMPREF1058_RS04135 0.58 -0.7 111,592 - HMPREF1058_RS04135 0.62 +0.1 111,596 + HMPREF1058_RS04135 0.62 -1.1 111,600 + HMPREF1058_RS04135 0.63 -0.5 111,769 + +0.1 111,818 - -1.7 111,822 - +2.0 111,843 - -0.0 111,872 + -1.3 111,930 + HMPREF1058_RS04130 0.31 -0.2 111,953 - HMPREF1058_RS04130 0.42 +0.6 112,007 + +0.7 112,020 + HMPREF1058_RS04130 0.72 +1.3 112,501 + HMPREF1058_RS04125 0.22 +0.3 112,501 + HMPREF1058_RS04125 0.22 -0.5 112,562 + HMPREF1058_RS04125 0.29 -0.5 112,599 + HMPREF1058_RS04125 0.33 -1.3 112,691 + HMPREF1058_RS04125 0.44 -0.2 112,709 + HMPREF1058_RS04125 0.46 -0.4 112,802 + HMPREF1058_RS04125 0.57 +0.5
Or see this region's nucleotide sequence