Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03880 and HMPREF1058_RS03875 are separated by 78 nucleotides HMPREF1058_RS03875 and HMPREF1058_RS03870 are separated by 445 nucleotides HMPREF1058_RS03870 and HMPREF1058_RS03865 overlap by 4 nucleotides
HMPREF1058_RS03880: HMPREF1058_RS03880 - 3-deoxy-manno-octulosonate cytidylyltransferase, at 166,427 to 167,185
_RS03880
HMPREF1058_RS03875: HMPREF1058_RS03875 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 167,264 to 167,638
_RS03875
HMPREF1058_RS03870: HMPREF1058_RS03870 - TetR/AcrR family transcriptional regulator, at 168,084 to 168,701
_RS03870
HMPREF1058_RS03865: HMPREF1058_RS03865 - TolC family protein, at 168,698 to 169,996
_RS03865
Position (kb) 168
169 Strain fitness (log2 ratio) -2
-1
0
1
2 at 167.201 kb on - strand at 167.256 kb on + strand at 167.299 kb on + strand at 167.303 kb on - strand, within HMPREF1058_RS03875 at 167.606 kb on + strand at 167.607 kb on - strand at 167.645 kb on + strand at 167.653 kb on + strand at 167.655 kb on + strand at 167.655 kb on + strand at 167.656 kb on - strand at 167.656 kb on - strand at 167.657 kb on + strand at 167.757 kb on - strand at 167.779 kb on - strand at 167.867 kb on + strand at 167.982 kb on + strand at 168.257 kb on - strand, within HMPREF1058_RS03870 at 168.385 kb on + strand, within HMPREF1058_RS03870 at 168.398 kb on - strand, within HMPREF1058_RS03870 at 168.400 kb on - strand, within HMPREF1058_RS03870 at 168.572 kb on + strand, within HMPREF1058_RS03870 at 168.608 kb on - strand, within HMPREF1058_RS03870 at 168.608 kb on - strand, within HMPREF1058_RS03870 at 168.642 kb on + strand at 168.643 kb on - strand at 168.644 kb on + strand at 168.644 kb on + strand at 169.103 kb on + strand, within HMPREF1058_RS03865 at 169.103 kb on + strand, within HMPREF1058_RS03865 at 169.104 kb on - strand, within HMPREF1058_RS03865 at 169.195 kb on - strand, within HMPREF1058_RS03865 at 169.290 kb on + strand, within HMPREF1058_RS03865 at 169.290 kb on + strand, within HMPREF1058_RS03865 at 169.401 kb on + strand, within HMPREF1058_RS03865 at 169.402 kb on - strand, within HMPREF1058_RS03865 at 169.411 kb on - strand, within HMPREF1058_RS03865 at 169.413 kb on + strand, within HMPREF1058_RS03865 at 169.413 kb on + strand, within HMPREF1058_RS03865 at 169.413 kb on + strand, within HMPREF1058_RS03865 at 169.414 kb on - strand, within HMPREF1058_RS03865 at 169.417 kb on + strand, within HMPREF1058_RS03865 at 169.505 kb on - strand, within HMPREF1058_RS03865 at 169.543 kb on - strand, within HMPREF1058_RS03865 at 169.607 kb on + strand, within HMPREF1058_RS03865 at 169.607 kb on + strand, within HMPREF1058_RS03865 at 169.647 kb on + strand, within HMPREF1058_RS03865 at 169.648 kb on - strand, within HMPREF1058_RS03865 at 169.648 kb on - strand, within HMPREF1058_RS03865 at 169.648 kb on - strand, within HMPREF1058_RS03865 at 169.649 kb on + strand, within HMPREF1058_RS03865 at 169.649 kb on + strand, within HMPREF1058_RS03865 at 169.650 kb on - strand, within HMPREF1058_RS03865 at 169.651 kb on + strand, within HMPREF1058_RS03865 at 169.651 kb on + strand, within HMPREF1058_RS03865
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 167,201 - +0.8 167,256 + +1.2 167,299 + +0.6 167,303 - HMPREF1058_RS03875 0.10 -1.0 167,606 + +1.0 167,607 - -1.0 167,645 + -1.9 167,653 + -0.4 167,655 + -0.5 167,655 + +1.2 167,656 - +0.8 167,656 - -0.2 167,657 + -1.2 167,757 - +1.3 167,779 - +1.7 167,867 + -0.1 167,982 + -0.3 168,257 - HMPREF1058_RS03870 0.28 -1.6 168,385 + HMPREF1058_RS03870 0.49 +1.1 168,398 - HMPREF1058_RS03870 0.51 +1.4 168,400 - HMPREF1058_RS03870 0.51 +0.8 168,572 + HMPREF1058_RS03870 0.79 +0.1 168,608 - HMPREF1058_RS03870 0.85 +0.9 168,608 - HMPREF1058_RS03870 0.85 -0.1 168,642 + -1.4 168,643 - -0.1 168,644 + +0.6 168,644 + +0.2 169,103 + HMPREF1058_RS03865 0.31 -1.4 169,103 + HMPREF1058_RS03865 0.31 -0.4 169,104 - HMPREF1058_RS03865 0.31 -0.7 169,195 - HMPREF1058_RS03865 0.38 +0.2 169,290 + HMPREF1058_RS03865 0.46 +0.5 169,290 + HMPREF1058_RS03865 0.46 +0.4 169,401 + HMPREF1058_RS03865 0.54 +0.2 169,402 - HMPREF1058_RS03865 0.54 -0.5 169,411 - HMPREF1058_RS03865 0.55 -1.5 169,413 + HMPREF1058_RS03865 0.55 +0.2 169,413 + HMPREF1058_RS03865 0.55 +0.8 169,413 + HMPREF1058_RS03865 0.55 -0.6 169,414 - HMPREF1058_RS03865 0.55 -0.4 169,417 + HMPREF1058_RS03865 0.55 -0.9 169,505 - HMPREF1058_RS03865 0.62 +1.8 169,543 - HMPREF1058_RS03865 0.65 -0.9 169,607 + HMPREF1058_RS03865 0.70 +1.0 169,607 + HMPREF1058_RS03865 0.70 +2.6 169,647 + HMPREF1058_RS03865 0.73 -0.3 169,648 - HMPREF1058_RS03865 0.73 +0.3 169,648 - HMPREF1058_RS03865 0.73 -0.1 169,648 - HMPREF1058_RS03865 0.73 +0.9 169,649 + HMPREF1058_RS03865 0.73 -0.8 169,649 + HMPREF1058_RS03865 0.73 -1.4 169,650 - HMPREF1058_RS03865 0.73 +0.2 169,651 + HMPREF1058_RS03865 0.73 +0.2 169,651 + HMPREF1058_RS03865 0.73 -0.3
Or see this region's nucleotide sequence