Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03775 and HMPREF1058_RS03770 are separated by 189 nucleotides HMPREF1058_RS03770 and HMPREF1058_RS03765 are separated by 158 nucleotides HMPREF1058_RS03765 and HMPREF1058_RS03760 are separated by 83 nucleotides
HMPREF1058_RS03775: HMPREF1058_RS03775 - biotin/lipoyl-binding protein, at 188,424 to 190,199
_RS03775
HMPREF1058_RS03770: HMPREF1058_RS03770 - RNA polymerase sigma factor, at 190,389 to 190,892
_RS03770
HMPREF1058_RS03765: HMPREF1058_RS03765 - trimeric intracellular cation channel family protein, at 191,051 to 191,665
_RS03765
HMPREF1058_RS03760: HMPREF1058_RS03760 - UDP-N-acetyl glucosamine 2-epimerase, at 191,749 to 192,837
_RS03760
Position (kb) 190
191 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 189.398 kb on + strand, within HMPREF1058_RS03775 at 189.400 kb on + strand, within HMPREF1058_RS03775 at 189.401 kb on - strand, within HMPREF1058_RS03775 at 189.401 kb on - strand, within HMPREF1058_RS03775 at 189.450 kb on - strand, within HMPREF1058_RS03775 at 189.548 kb on + strand, within HMPREF1058_RS03775 at 189.548 kb on + strand, within HMPREF1058_RS03775 at 189.591 kb on + strand, within HMPREF1058_RS03775 at 189.731 kb on - strand, within HMPREF1058_RS03775 at 189.740 kb on + strand, within HMPREF1058_RS03775 at 189.802 kb on + strand, within HMPREF1058_RS03775 at 189.803 kb on - strand, within HMPREF1058_RS03775 at 189.808 kb on - strand, within HMPREF1058_RS03775 at 189.825 kb on - strand, within HMPREF1058_RS03775 at 189.904 kb on - strand, within HMPREF1058_RS03775 at 189.957 kb on - strand, within HMPREF1058_RS03775 at 189.957 kb on - strand, within HMPREF1058_RS03775 at 189.982 kb on - strand, within HMPREF1058_RS03775 at 189.992 kb on + strand, within HMPREF1058_RS03775 at 189.998 kb on + strand, within HMPREF1058_RS03775 at 190.029 kb on + strand at 190.029 kb on + strand at 190.029 kb on + strand at 190.029 kb on + strand at 190.062 kb on - strand at 190.161 kb on - strand at 190.305 kb on - strand at 190.312 kb on + strand at 190.526 kb on + strand, within HMPREF1058_RS03770 at 190.555 kb on - strand, within HMPREF1058_RS03770 at 190.556 kb on + strand, within HMPREF1058_RS03770 at 190.556 kb on + strand, within HMPREF1058_RS03770 at 190.557 kb on - strand, within HMPREF1058_RS03770 at 190.557 kb on - strand, within HMPREF1058_RS03770 at 190.557 kb on - strand, within HMPREF1058_RS03770 at 190.564 kb on - strand, within HMPREF1058_RS03770 at 190.580 kb on - strand, within HMPREF1058_RS03770 at 190.580 kb on - strand, within HMPREF1058_RS03770 at 190.596 kb on - strand, within HMPREF1058_RS03770 at 190.620 kb on - strand, within HMPREF1058_RS03770 at 190.623 kb on + strand, within HMPREF1058_RS03770 at 190.623 kb on + strand, within HMPREF1058_RS03770 at 190.624 kb on - strand, within HMPREF1058_RS03770 at 190.624 kb on - strand, within HMPREF1058_RS03770 at 190.631 kb on - strand, within HMPREF1058_RS03770 at 190.644 kb on - strand, within HMPREF1058_RS03770 at 190.671 kb on + strand, within HMPREF1058_RS03770 at 190.712 kb on + strand, within HMPREF1058_RS03770 at 190.713 kb on - strand, within HMPREF1058_RS03770 at 190.714 kb on + strand, within HMPREF1058_RS03770 at 190.714 kb on + strand, within HMPREF1058_RS03770 at 190.714 kb on + strand, within HMPREF1058_RS03770 at 190.747 kb on + strand, within HMPREF1058_RS03770 at 190.747 kb on + strand, within HMPREF1058_RS03770 at 190.747 kb on + strand, within HMPREF1058_RS03770 at 190.747 kb on + strand, within HMPREF1058_RS03770 at 190.748 kb on - strand, within HMPREF1058_RS03770 at 190.748 kb on - strand, within HMPREF1058_RS03770 at 190.843 kb on - strand at 190.880 kb on + strand at 190.892 kb on + strand at 191.079 kb on - strand at 191.087 kb on - strand at 191.125 kb on + strand, within HMPREF1058_RS03765 at 191.126 kb on - strand, within HMPREF1058_RS03765 at 191.129 kb on - strand, within HMPREF1058_RS03765 at 191.129 kb on - strand, within HMPREF1058_RS03765 at 191.129 kb on - strand, within HMPREF1058_RS03765 at 191.136 kb on - strand, within HMPREF1058_RS03765 at 191.177 kb on + strand, within HMPREF1058_RS03765 at 191.254 kb on + strand, within HMPREF1058_RS03765 at 191.255 kb on - strand, within HMPREF1058_RS03765 at 191.306 kb on + strand at 191.307 kb on - strand, within HMPREF1058_RS03765 at 191.309 kb on - strand, within HMPREF1058_RS03765 at 191.411 kb on - strand, within HMPREF1058_RS03765 at 191.411 kb on - strand, within HMPREF1058_RS03765 at 191.422 kb on - strand, within HMPREF1058_RS03765 at 191.422 kb on - strand, within HMPREF1058_RS03765 at 191.438 kb on + strand, within HMPREF1058_RS03765 at 191.465 kb on + strand, within HMPREF1058_RS03765 at 191.466 kb on - strand, within HMPREF1058_RS03765 at 191.466 kb on - strand, within HMPREF1058_RS03765 at 191.469 kb on - strand, within HMPREF1058_RS03765 at 191.472 kb on + strand, within HMPREF1058_RS03765 at 191.472 kb on + strand, within HMPREF1058_RS03765 at 191.473 kb on - strand, within HMPREF1058_RS03765 at 191.475 kb on - strand, within HMPREF1058_RS03765 at 191.475 kb on - strand, within HMPREF1058_RS03765 at 191.476 kb on + strand, within HMPREF1058_RS03765 at 191.527 kb on + strand, within HMPREF1058_RS03765 at 191.527 kb on + strand, within HMPREF1058_RS03765 at 191.559 kb on - strand, within HMPREF1058_RS03765 at 191.562 kb on + strand, within HMPREF1058_RS03765 at 191.563 kb on - strand, within HMPREF1058_RS03765 at 191.563 kb on - strand, within HMPREF1058_RS03765 at 191.563 kb on - strand, within HMPREF1058_RS03765 at 191.563 kb on - strand at 191.633 kb on + strand at 191.643 kb on - strand at 191.665 kb on + strand at 191.665 kb on + strand at 191.735 kb on + strand at 191.756 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 189,398 + HMPREF1058_RS03775 0.55 -1.5 189,400 + HMPREF1058_RS03775 0.55 -0.1 189,401 - HMPREF1058_RS03775 0.55 +0.3 189,401 - HMPREF1058_RS03775 0.55 -0.2 189,450 - HMPREF1058_RS03775 0.58 -0.1 189,548 + HMPREF1058_RS03775 0.63 -0.6 189,548 + HMPREF1058_RS03775 0.63 -0.2 189,591 + HMPREF1058_RS03775 0.66 -0.3 189,731 - HMPREF1058_RS03775 0.74 +0.8 189,740 + HMPREF1058_RS03775 0.74 +0.9 189,802 + HMPREF1058_RS03775 0.78 +0.2 189,803 - HMPREF1058_RS03775 0.78 +1.4 189,808 - HMPREF1058_RS03775 0.78 -2.8 189,825 - HMPREF1058_RS03775 0.79 +0.6 189,904 - HMPREF1058_RS03775 0.83 +0.5 189,957 - HMPREF1058_RS03775 0.86 +0.7 189,957 - HMPREF1058_RS03775 0.86 -0.6 189,982 - HMPREF1058_RS03775 0.88 +0.1 189,992 + HMPREF1058_RS03775 0.88 +1.6 189,998 + HMPREF1058_RS03775 0.89 +0.0 190,029 + +0.6 190,029 + +2.0 190,029 + +0.5 190,029 + +0.8 190,062 - -0.0 190,161 - -2.0 190,305 - -1.9 190,312 + +0.9 190,526 + HMPREF1058_RS03770 0.27 +0.1 190,555 - HMPREF1058_RS03770 0.33 -1.4 190,556 + HMPREF1058_RS03770 0.33 +1.9 190,556 + HMPREF1058_RS03770 0.33 +1.2 190,557 - HMPREF1058_RS03770 0.33 +0.8 190,557 - HMPREF1058_RS03770 0.33 +1.1 190,557 - HMPREF1058_RS03770 0.33 -0.4 190,564 - HMPREF1058_RS03770 0.35 +2.7 190,580 - HMPREF1058_RS03770 0.38 +0.2 190,580 - HMPREF1058_RS03770 0.38 +1.4 190,596 - HMPREF1058_RS03770 0.41 +0.2 190,620 - HMPREF1058_RS03770 0.46 +0.4 190,623 + HMPREF1058_RS03770 0.46 -0.2 190,623 + HMPREF1058_RS03770 0.46 +1.7 190,624 - HMPREF1058_RS03770 0.47 +0.5 190,624 - HMPREF1058_RS03770 0.47 +0.7 190,631 - HMPREF1058_RS03770 0.48 +1.3 190,644 - HMPREF1058_RS03770 0.51 +1.0 190,671 + HMPREF1058_RS03770 0.56 +1.5 190,712 + HMPREF1058_RS03770 0.64 +1.0 190,713 - HMPREF1058_RS03770 0.64 +0.0 190,714 + HMPREF1058_RS03770 0.64 +0.2 190,714 + HMPREF1058_RS03770 0.64 +1.5 190,714 + HMPREF1058_RS03770 0.64 +2.4 190,747 + HMPREF1058_RS03770 0.71 +0.2 190,747 + HMPREF1058_RS03770 0.71 +0.7 190,747 + HMPREF1058_RS03770 0.71 -0.7 190,747 + HMPREF1058_RS03770 0.71 +1.4 190,748 - HMPREF1058_RS03770 0.71 +1.2 190,748 - HMPREF1058_RS03770 0.71 +0.6 190,843 - +1.8 190,880 + -0.6 190,892 + +1.4 191,079 - -0.9 191,087 - -0.6 191,125 + HMPREF1058_RS03765 0.12 -0.7 191,126 - HMPREF1058_RS03765 0.12 +0.4 191,129 - HMPREF1058_RS03765 0.13 +1.0 191,129 - HMPREF1058_RS03765 0.13 +0.3 191,129 - HMPREF1058_RS03765 0.13 +0.4 191,136 - HMPREF1058_RS03765 0.14 +0.6 191,177 + HMPREF1058_RS03765 0.20 +0.6 191,254 + HMPREF1058_RS03765 0.33 +0.7 191,255 - HMPREF1058_RS03765 0.33 +0.3 191,306 + +0.4 191,307 - HMPREF1058_RS03765 0.42 +0.8 191,309 - HMPREF1058_RS03765 0.42 -0.4 191,411 - HMPREF1058_RS03765 0.59 +1.0 191,411 - HMPREF1058_RS03765 0.59 -0.4 191,422 - HMPREF1058_RS03765 0.60 +1.0 191,422 - HMPREF1058_RS03765 0.60 +1.1 191,438 + HMPREF1058_RS03765 0.63 -0.3 191,465 + HMPREF1058_RS03765 0.67 +0.0 191,466 - HMPREF1058_RS03765 0.67 +0.1 191,466 - HMPREF1058_RS03765 0.67 +0.3 191,469 - HMPREF1058_RS03765 0.68 +0.5 191,472 + HMPREF1058_RS03765 0.68 +0.0 191,472 + HMPREF1058_RS03765 0.68 +0.2 191,473 - HMPREF1058_RS03765 0.69 +1.0 191,475 - HMPREF1058_RS03765 0.69 +2.0 191,475 - HMPREF1058_RS03765 0.69 -0.4 191,476 + HMPREF1058_RS03765 0.69 +0.5 191,527 + HMPREF1058_RS03765 0.77 -0.9 191,527 + HMPREF1058_RS03765 0.77 +0.2 191,559 - HMPREF1058_RS03765 0.83 -0.2 191,562 + HMPREF1058_RS03765 0.83 +0.4 191,563 - HMPREF1058_RS03765 0.83 +1.6 191,563 - HMPREF1058_RS03765 0.83 +0.9 191,563 - HMPREF1058_RS03765 0.83 +0.2 191,563 - -1.3 191,633 + +0.2 191,643 - -0.6 191,665 + -0.9 191,665 + -1.2 191,735 + +0.3 191,756 + +0.3
Or see this region's nucleotide sequence