Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03660 and HMPREF1058_RS03655 are separated by 19 nucleotides HMPREF1058_RS03655 and HMPREF1058_RS03650 are separated by 34 nucleotides
HMPREF1058_RS03660: HMPREF1058_RS03660 - ABC transporter permease, at 224,190 to 226,502
_RS03660
HMPREF1058_RS03655: HMPREF1058_RS03655 - ABC transporter ATP-binding protein, at 226,522 to 227,196
_RS03655
HMPREF1058_RS03650: HMPREF1058_RS03650 - FtsX-like permease family protein, at 227,231 to 229,540
_RS03650
Position (kb) 226
227
228 Strain fitness (log2 ratio) -2
-1
0
1
2 at 225.563 kb on + strand, within HMPREF1058_RS03660 at 225.576 kb on - strand, within HMPREF1058_RS03660 at 225.610 kb on - strand, within HMPREF1058_RS03660 at 225.613 kb on - strand, within HMPREF1058_RS03660 at 225.615 kb on + strand, within HMPREF1058_RS03660 at 225.615 kb on + strand, within HMPREF1058_RS03660 at 225.616 kb on - strand, within HMPREF1058_RS03660 at 225.619 kb on + strand, within HMPREF1058_RS03660 at 225.619 kb on + strand, within HMPREF1058_RS03660 at 225.620 kb on - strand, within HMPREF1058_RS03660 at 225.767 kb on - strand, within HMPREF1058_RS03660 at 225.787 kb on + strand, within HMPREF1058_RS03660 at 225.788 kb on - strand, within HMPREF1058_RS03660 at 225.843 kb on - strand, within HMPREF1058_RS03660 at 225.845 kb on - strand, within HMPREF1058_RS03660 at 225.847 kb on + strand, within HMPREF1058_RS03660 at 225.847 kb on + strand, within HMPREF1058_RS03660 at 225.848 kb on - strand, within HMPREF1058_RS03660 at 225.848 kb on - strand, within HMPREF1058_RS03660 at 225.881 kb on + strand, within HMPREF1058_RS03660 at 225.882 kb on - strand, within HMPREF1058_RS03660 at 225.882 kb on - strand, within HMPREF1058_RS03660 at 225.883 kb on + strand, within HMPREF1058_RS03660 at 225.883 kb on + strand, within HMPREF1058_RS03660 at 225.883 kb on + strand, within HMPREF1058_RS03660 at 225.926 kb on - strand, within HMPREF1058_RS03660 at 226.057 kb on - strand, within HMPREF1058_RS03660 at 226.130 kb on + strand, within HMPREF1058_RS03660 at 226.134 kb on + strand, within HMPREF1058_RS03660 at 226.138 kb on + strand, within HMPREF1058_RS03660 at 226.138 kb on + strand, within HMPREF1058_RS03660 at 226.139 kb on - strand, within HMPREF1058_RS03660 at 226.144 kb on + strand, within HMPREF1058_RS03660 at 226.283 kb on - strand at 226.309 kb on - strand at 226.434 kb on + strand at 226.468 kb on - strand at 226.480 kb on - strand at 226.486 kb on + strand at 226.490 kb on - strand at 226.657 kb on + strand, within HMPREF1058_RS03655 at 226.716 kb on + strand, within HMPREF1058_RS03655 at 226.869 kb on - strand, within HMPREF1058_RS03655 at 226.946 kb on - strand, within HMPREF1058_RS03655 at 227.089 kb on - strand, within HMPREF1058_RS03655 at 227.167 kb on + strand at 227.197 kb on - strand at 227.199 kb on + strand at 227.222 kb on + strand at 227.242 kb on + strand at 227.310 kb on - strand at 227.324 kb on - strand at 227.327 kb on + strand at 227.328 kb on - strand at 227.328 kb on - strand at 227.333 kb on + strand at 227.334 kb on - strand at 227.393 kb on + strand at 227.397 kb on + strand at 227.397 kb on + strand at 227.397 kb on + strand at 227.398 kb on - strand at 227.413 kb on + strand at 227.546 kb on - strand, within HMPREF1058_RS03650 at 227.631 kb on + strand, within HMPREF1058_RS03650 at 227.976 kb on - strand, within HMPREF1058_RS03650 at 228.000 kb on + strand, within HMPREF1058_RS03650 at 228.001 kb on - strand, within HMPREF1058_RS03650 at 228.094 kb on + strand, within HMPREF1058_RS03650 at 228.095 kb on - strand, within HMPREF1058_RS03650 at 228.120 kb on + strand, within HMPREF1058_RS03650
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 225,563 + HMPREF1058_RS03660 0.59 +0.0 225,576 - HMPREF1058_RS03660 0.60 +0.5 225,610 - HMPREF1058_RS03660 0.61 -0.4 225,613 - HMPREF1058_RS03660 0.62 +0.6 225,615 + HMPREF1058_RS03660 0.62 +0.2 225,615 + HMPREF1058_RS03660 0.62 -0.3 225,616 - HMPREF1058_RS03660 0.62 -0.5 225,619 + HMPREF1058_RS03660 0.62 +0.7 225,619 + HMPREF1058_RS03660 0.62 -0.1 225,620 - HMPREF1058_RS03660 0.62 +0.7 225,767 - HMPREF1058_RS03660 0.68 -0.6 225,787 + HMPREF1058_RS03660 0.69 +0.8 225,788 - HMPREF1058_RS03660 0.69 -0.8 225,843 - HMPREF1058_RS03660 0.71 -1.0 225,845 - HMPREF1058_RS03660 0.72 +1.0 225,847 + HMPREF1058_RS03660 0.72 -0.5 225,847 + HMPREF1058_RS03660 0.72 +2.0 225,848 - HMPREF1058_RS03660 0.72 +0.6 225,848 - HMPREF1058_RS03660 0.72 +0.0 225,881 + HMPREF1058_RS03660 0.73 +0.7 225,882 - HMPREF1058_RS03660 0.73 -0.8 225,882 - HMPREF1058_RS03660 0.73 -0.0 225,883 + HMPREF1058_RS03660 0.73 -0.6 225,883 + HMPREF1058_RS03660 0.73 +0.6 225,883 + HMPREF1058_RS03660 0.73 -0.2 225,926 - HMPREF1058_RS03660 0.75 -0.2 226,057 - HMPREF1058_RS03660 0.81 +0.4 226,130 + HMPREF1058_RS03660 0.84 +0.9 226,134 + HMPREF1058_RS03660 0.84 +0.0 226,138 + HMPREF1058_RS03660 0.84 -0.4 226,138 + HMPREF1058_RS03660 0.84 -1.8 226,139 - HMPREF1058_RS03660 0.84 -0.6 226,144 + HMPREF1058_RS03660 0.84 -0.8 226,283 - -1.6 226,309 - +0.8 226,434 + -0.3 226,468 - +0.1 226,480 - +0.7 226,486 + +0.2 226,490 - -0.3 226,657 + HMPREF1058_RS03655 0.20 +0.1 226,716 + HMPREF1058_RS03655 0.29 -1.0 226,869 - HMPREF1058_RS03655 0.51 +1.1 226,946 - HMPREF1058_RS03655 0.63 +0.6 227,089 - HMPREF1058_RS03655 0.84 -0.2 227,167 + +1.3 227,197 - -0.4 227,199 + +1.2 227,222 + +0.1 227,242 + +1.0 227,310 - +1.3 227,324 - +0.0 227,327 + +0.8 227,328 - +0.3 227,328 - +0.3 227,333 + +0.3 227,334 - +1.2 227,393 + +1.5 227,397 + -0.3 227,397 + -0.8 227,397 + -1.4 227,398 - +0.8 227,413 + -1.3 227,546 - HMPREF1058_RS03650 0.14 -0.3 227,631 + HMPREF1058_RS03650 0.17 -0.4 227,976 - HMPREF1058_RS03650 0.32 -1.6 228,000 + HMPREF1058_RS03650 0.33 +0.6 228,001 - HMPREF1058_RS03650 0.33 -0.7 228,094 + HMPREF1058_RS03650 0.37 -0.9 228,095 - HMPREF1058_RS03650 0.37 -0.9 228,120 + HMPREF1058_RS03650 0.38 -0.1
Or see this region's nucleotide sequence