Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03590 and HMPREF1058_RS03585 are separated by 654 nucleotides HMPREF1058_RS03585 and HMPREF1058_RS03580 are separated by 82 nucleotides
HMPREF1058_RS03590: HMPREF1058_RS03590 - hypothetical protein, at 242,545 to 243,912
_RS03590
HMPREF1058_RS03585: HMPREF1058_RS03585 - hypothetical protein, at 244,567 to 244,950
_RS03585
HMPREF1058_RS03580: HMPREF1058_RS03580 - UpxY family transcription antiterminator, at 245,033 to 245,581
_RS03580
Position (kb) 244
245 Strain fitness (log2 ratio) -2
-1
0
1
2 at 243.596 kb on + strand, within HMPREF1058_RS03590 at 243.596 kb on + strand, within HMPREF1058_RS03590 at 243.596 kb on + strand, within HMPREF1058_RS03590 at 243.596 kb on + strand, within HMPREF1058_RS03590 at 243.596 kb on + strand, within HMPREF1058_RS03590 at 243.596 kb on + strand, within HMPREF1058_RS03590 at 243.597 kb on - strand, within HMPREF1058_RS03590 at 243.597 kb on - strand, within HMPREF1058_RS03590 at 243.601 kb on - strand, within HMPREF1058_RS03590 at 243.603 kb on + strand, within HMPREF1058_RS03590 at 243.604 kb on - strand, within HMPREF1058_RS03590 at 243.612 kb on - strand, within HMPREF1058_RS03590 at 243.663 kb on + strand, within HMPREF1058_RS03590 at 243.802 kb on + strand at 243.803 kb on - strand at 243.804 kb on + strand at 243.853 kb on - strand at 243.875 kb on + strand at 243.875 kb on + strand at 243.897 kb on + strand at 243.898 kb on - strand at 243.898 kb on - strand at 243.900 kb on - strand at 243.913 kb on - strand at 243.918 kb on + strand at 243.927 kb on - strand at 243.968 kb on - strand at 243.987 kb on + strand at 244.509 kb on + strand at 244.509 kb on + strand at 244.510 kb on - strand at 244.510 kb on - strand at 244.671 kb on + strand, within HMPREF1058_RS03585 at 244.672 kb on - strand, within HMPREF1058_RS03585 at 244.676 kb on + strand, within HMPREF1058_RS03585 at 244.676 kb on + strand, within HMPREF1058_RS03585 at 244.730 kb on + strand, within HMPREF1058_RS03585 at 244.889 kb on + strand, within HMPREF1058_RS03585 at 244.951 kb on + strand at 244.954 kb on + strand at 244.954 kb on + strand at 244.968 kb on - strand at 244.970 kb on - strand at 245.259 kb on + strand, within HMPREF1058_RS03580 at 245.338 kb on + strand, within HMPREF1058_RS03580 at 245.338 kb on + strand, within HMPREF1058_RS03580 at 245.339 kb on - strand, within HMPREF1058_RS03580 at 245.403 kb on - strand, within HMPREF1058_RS03580 at 245.581 kb on + strand at 245.648 kb on + strand at 245.731 kb on - strand at 245.798 kb on - strand at 245.809 kb on + strand at 245.811 kb on + strand at 245.812 kb on - strand at 245.815 kb on - strand at 245.819 kb on - strand at 245.819 kb on - strand at 245.821 kb on - strand at 245.821 kb on - strand at 245.926 kb on - strand at 245.929 kb on + strand at 245.930 kb on - strand at 245.930 kb on - strand at 245.930 kb on - strand at 245.930 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 243,596 + HMPREF1058_RS03590 0.77 -0.2 243,596 + HMPREF1058_RS03590 0.77 -0.6 243,596 + HMPREF1058_RS03590 0.77 -0.8 243,596 + HMPREF1058_RS03590 0.77 -0.4 243,596 + HMPREF1058_RS03590 0.77 +0.6 243,596 + HMPREF1058_RS03590 0.77 +0.0 243,597 - HMPREF1058_RS03590 0.77 -0.1 243,597 - HMPREF1058_RS03590 0.77 -1.0 243,601 - HMPREF1058_RS03590 0.77 -0.3 243,603 + HMPREF1058_RS03590 0.77 -1.0 243,604 - HMPREF1058_RS03590 0.77 +1.9 243,612 - HMPREF1058_RS03590 0.78 -0.9 243,663 + HMPREF1058_RS03590 0.82 +0.4 243,802 + -1.3 243,803 - -0.3 243,804 + +1.3 243,853 - -0.4 243,875 + -0.5 243,875 + -2.1 243,897 + -2.4 243,898 - +1.7 243,898 - -0.4 243,900 - +0.0 243,913 - -0.5 243,918 + +0.5 243,927 - -1.4 243,968 - -1.1 243,987 + +0.7 244,509 + +0.5 244,509 + -0.2 244,510 - -0.0 244,510 - +1.1 244,671 + HMPREF1058_RS03585 0.27 -0.6 244,672 - HMPREF1058_RS03585 0.27 -0.0 244,676 + HMPREF1058_RS03585 0.28 +2.7 244,676 + HMPREF1058_RS03585 0.28 +0.4 244,730 + HMPREF1058_RS03585 0.42 +1.6 244,889 + HMPREF1058_RS03585 0.84 +0.3 244,951 + +0.3 244,954 + -0.4 244,954 + -0.5 244,968 - +0.4 244,970 - +1.2 245,259 + HMPREF1058_RS03580 0.41 -0.8 245,338 + HMPREF1058_RS03580 0.56 +0.1 245,338 + HMPREF1058_RS03580 0.56 +0.4 245,339 - HMPREF1058_RS03580 0.56 -0.3 245,403 - HMPREF1058_RS03580 0.67 +1.4 245,581 + -0.4 245,648 + -0.7 245,731 - -0.6 245,798 - -0.2 245,809 + +0.4 245,811 + -1.1 245,812 - -1.4 245,815 - +0.2 245,819 - +1.1 245,819 - -1.6 245,821 - -2.2 245,821 - +1.2 245,926 - -0.8 245,929 + -0.2 245,930 - -1.0 245,930 - -0.7 245,930 - -0.5 245,930 - +0.0
Or see this region's nucleotide sequence