Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS21110 and HMPREF1058_RS03435 are separated by 286 nucleotides HMPREF1058_RS03435 and HMPREF1058_RS21670 are separated by 74 nucleotides HMPREF1058_RS21670 and HMPREF1058_RS03430 overlap by 4 nucleotides HMPREF1058_RS03430 and HMPREF1058_RS03425 are separated by 340 nucleotides
HMPREF1058_RS21110: HMPREF1058_RS21110 - DUF4248 domain-containing protein, at 280,870 to 281,076
_RS21110
HMPREF1058_RS03435: HMPREF1058_RS03435 - DNA-binding protein, at 281,363 to 281,869
_RS03435
HMPREF1058_RS21670: HMPREF1058_RS21670 - smalltalk protein, at 281,944 to 282,063
_RS21670
HMPREF1058_RS03430: HMPREF1058_RS03430 - N-acetylmuramoyl-L-alanine amidase, at 282,060 to 282,572
_RS03430
HMPREF1058_RS03425: HMPREF1058_RS03425 - glycosyltransferase family 4 protein, at 282,913 to 284,058
_RS03425
Position (kb) 282
283 Strain fitness (log2 ratio) -2
-1
0
1
2 at 281.112 kb on + strand at 281.122 kb on + strand at 281.188 kb on + strand at 281.210 kb on + strand at 281.210 kb on + strand at 281.211 kb on - strand at 281.348 kb on - strand at 281.380 kb on + strand at 281.380 kb on + strand at 281.444 kb on + strand, within HMPREF1058_RS03435 at 281.504 kb on + strand, within HMPREF1058_RS03435 at 281.522 kb on + strand, within HMPREF1058_RS03435 at 281.523 kb on - strand, within HMPREF1058_RS03435 at 281.665 kb on - strand at 282.147 kb on + strand, within HMPREF1058_RS03430 at 282.147 kb on + strand, within HMPREF1058_RS03430 at 282.653 kb on - strand at 282.653 kb on - strand at 282.681 kb on + strand at 282.857 kb on - strand at 282.901 kb on + strand at 282.901 kb on + strand at 282.901 kb on + strand at 282.915 kb on - strand at 282.915 kb on - strand at 282.942 kb on - strand at 283.056 kb on + strand, within HMPREF1058_RS03425 at 283.057 kb on - strand, within HMPREF1058_RS03425 at 283.057 kb on - strand, within HMPREF1058_RS03425 at 283.157 kb on + strand, within HMPREF1058_RS03425 at 283.220 kb on + strand, within HMPREF1058_RS03425 at 283.221 kb on - strand, within HMPREF1058_RS03425 at 283.221 kb on - strand, within HMPREF1058_RS03425 at 283.230 kb on + strand, within HMPREF1058_RS03425 at 283.299 kb on + strand, within HMPREF1058_RS03425 at 283.315 kb on - strand, within HMPREF1058_RS03425 at 283.334 kb on - strand, within HMPREF1058_RS03425 at 283.489 kb on - strand, within HMPREF1058_RS03425 at 283.492 kb on - strand at 283.511 kb on - strand, within HMPREF1058_RS03425 at 283.549 kb on - strand, within HMPREF1058_RS03425 at 283.549 kb on - strand, within HMPREF1058_RS03425 at 283.551 kb on + strand, within HMPREF1058_RS03425
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 281,112 + -0.7 281,122 + +0.2 281,188 + -0.1 281,210 + -0.4 281,210 + -0.6 281,211 - +0.8 281,348 - +2.6 281,380 + +0.7 281,380 + -1.3 281,444 + HMPREF1058_RS03435 0.16 -1.5 281,504 + HMPREF1058_RS03435 0.28 -0.8 281,522 + HMPREF1058_RS03435 0.31 -0.5 281,523 - HMPREF1058_RS03435 0.32 -2.2 281,665 - -0.8 282,147 + HMPREF1058_RS03430 0.17 -0.0 282,147 + HMPREF1058_RS03430 0.17 +1.2 282,653 - -0.6 282,653 - -1.9 282,681 + +0.9 282,857 - -0.3 282,901 + +0.4 282,901 + -0.2 282,901 + -0.1 282,915 - -0.3 282,915 - -0.6 282,942 - -0.7 283,056 + HMPREF1058_RS03425 0.12 +0.4 283,057 - HMPREF1058_RS03425 0.13 +0.9 283,057 - HMPREF1058_RS03425 0.13 -0.2 283,157 + HMPREF1058_RS03425 0.21 +0.7 283,220 + HMPREF1058_RS03425 0.27 +0.2 283,221 - HMPREF1058_RS03425 0.27 +2.0 283,221 - HMPREF1058_RS03425 0.27 +0.2 283,230 + HMPREF1058_RS03425 0.28 +0.2 283,299 + HMPREF1058_RS03425 0.34 -1.5 283,315 - HMPREF1058_RS03425 0.35 -0.9 283,334 - HMPREF1058_RS03425 0.37 +0.2 283,489 - HMPREF1058_RS03425 0.50 -2.3 283,492 - -0.6 283,511 - HMPREF1058_RS03425 0.52 -0.0 283,549 - HMPREF1058_RS03425 0.55 +0.4 283,549 - HMPREF1058_RS03425 0.55 -0.1 283,551 + HMPREF1058_RS03425 0.56 -0.6
Or see this region's nucleotide sequence