Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS03215

Experiment: Xylan from corn core 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS03220 and HMPREF1058_RS03215 are separated by 522 nucleotidesHMPREF1058_RS03215 and HMPREF1058_RS03210 are separated by 226 nucleotides HMPREF1058_RS03220: HMPREF1058_RS03220 - polyamine ABC transporter ATP-binding protein, at 326,633 to 328,027 _RS03220 HMPREF1058_RS03215: HMPREF1058_RS03215 - AhpC/TSA family protein, at 328,550 to 329,641 _RS03215 HMPREF1058_RS03210: HMPREF1058_RS03210 - alpha-glucan family phosphorylase, at 329,868 to 332,432 _RS03210 Position (kb) 328 329 330Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 327.584 kb on + strand, within HMPREF1058_RS03220at 327.669 kb on - strand, within HMPREF1058_RS03220at 327.759 kb on + strand, within HMPREF1058_RS03220at 327.759 kb on + strand, within HMPREF1058_RS03220at 327.760 kb on - strand, within HMPREF1058_RS03220at 327.775 kb on + strand, within HMPREF1058_RS03220at 327.776 kb on - strand, within HMPREF1058_RS03220at 327.825 kb on - strand, within HMPREF1058_RS03220at 327.830 kb on + strand, within HMPREF1058_RS03220at 327.831 kb on - strand, within HMPREF1058_RS03220at 327.939 kb on - strandat 328.001 kb on + strandat 328.002 kb on - strandat 328.004 kb on - strandat 328.004 kb on - strandat 328.005 kb on + strandat 328.009 kb on + strandat 328.021 kb on + strandat 328.086 kb on - strandat 328.261 kb on + strandat 328.376 kb on - strandat 328.397 kb on + strandat 328.398 kb on - strandat 328.453 kb on + strandat 328.503 kb on + strandat 328.504 kb on - strandat 328.504 kb on - strandat 328.506 kb on + strandat 328.515 kb on - strandat 328.543 kb on + strandat 328.586 kb on - strandat 328.620 kb on - strandat 328.620 kb on - strandat 328.638 kb on + strandat 328.781 kb on + strand, within HMPREF1058_RS03215at 328.834 kb on + strand, within HMPREF1058_RS03215at 328.834 kb on + strand, within HMPREF1058_RS03215at 328.834 kb on + strand, within HMPREF1058_RS03215at 328.835 kb on - strand, within HMPREF1058_RS03215at 328.848 kb on + strand, within HMPREF1058_RS03215at 328.852 kb on + strand, within HMPREF1058_RS03215at 328.879 kb on + strand, within HMPREF1058_RS03215at 328.880 kb on - strand, within HMPREF1058_RS03215at 328.970 kb on - strandat 328.989 kb on + strand, within HMPREF1058_RS03215at 328.996 kb on + strand, within HMPREF1058_RS03215at 329.028 kb on + strand, within HMPREF1058_RS03215at 329.028 kb on + strand, within HMPREF1058_RS03215at 329.085 kb on + strand, within HMPREF1058_RS03215at 329.143 kb on - strand, within HMPREF1058_RS03215at 329.176 kb on + strand, within HMPREF1058_RS03215at 329.177 kb on - strandat 329.234 kb on + strand, within HMPREF1058_RS03215at 329.235 kb on - strand, within HMPREF1058_RS03215at 329.266 kb on + strand, within HMPREF1058_RS03215at 329.266 kb on + strand, within HMPREF1058_RS03215at 329.309 kb on - strand, within HMPREF1058_RS03215at 329.370 kb on + strand, within HMPREF1058_RS03215at 329.370 kb on + strand, within HMPREF1058_RS03215at 329.379 kb on - strand, within HMPREF1058_RS03215at 329.379 kb on - strand, within HMPREF1058_RS03215at 329.412 kb on + strand, within HMPREF1058_RS03215at 329.412 kb on + strand, within HMPREF1058_RS03215at 329.417 kb on - strand, within HMPREF1058_RS03215at 329.473 kb on + strand, within HMPREF1058_RS03215at 329.575 kb on + strandat 329.696 kb on + strandat 329.791 kb on - strandat 329.794 kb on - strandat 329.839 kb on + strandat 329.858 kb on - strandat 329.858 kb on - strandat 329.887 kb on + strandat 329.888 kb on - strandat 329.933 kb on + strandat 329.934 kb on - strandat 329.990 kb on + strandat 329.991 kb on - strandat 329.992 kb on + strandat 329.993 kb on - strandat 329.999 kb on + strandat 330.000 kb on - strandat 330.000 kb on - strandat 330.011 kb on + strandat 330.037 kb on + strandat 330.041 kb on + strandat 330.041 kb on + strandat 330.042 kb on - strandat 330.087 kb on - strandat 330.117 kb on + strandat 330.118 kb on - strandat 330.124 kb on + strandat 330.124 kb on + strandat 330.125 kb on - strand, within HMPREF1058_RS03210at 330.125 kb on - strand, within HMPREF1058_RS03210at 330.128 kb on + strand, within HMPREF1058_RS03210at 330.129 kb on - strand, within HMPREF1058_RS03210at 330.134 kb on + strand, within HMPREF1058_RS03210at 330.135 kb on - strand, within HMPREF1058_RS03210at 330.135 kb on - strand, within HMPREF1058_RS03210at 330.135 kb on - strand, within HMPREF1058_RS03210at 330.135 kb on - strand, within HMPREF1058_RS03210at 330.136 kb on + strand, within HMPREF1058_RS03210at 330.314 kb on + strand, within HMPREF1058_RS03210at 330.315 kb on - strand, within HMPREF1058_RS03210at 330.319 kb on + strand, within HMPREF1058_RS03210at 330.320 kb on - strand, within HMPREF1058_RS03210at 330.322 kb on + strand, within HMPREF1058_RS03210at 330.323 kb on - strand, within HMPREF1058_RS03210at 330.323 kb on - strand, within HMPREF1058_RS03210at 330.330 kb on + strand, within HMPREF1058_RS03210at 330.347 kb on + strand, within HMPREF1058_RS03210at 330.371 kb on + strand, within HMPREF1058_RS03210at 330.427 kb on + strand, within HMPREF1058_RS03210at 330.431 kb on - strand, within HMPREF1058_RS03210at 330.468 kb on - strand, within HMPREF1058_RS03210at 330.468 kb on - strand, within HMPREF1058_RS03210at 330.513 kb on - strand, within HMPREF1058_RS03210

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C)
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327,584 + HMPREF1058_RS03220 0.68 +0.8
327,669 - HMPREF1058_RS03220 0.74 +1.0
327,759 + HMPREF1058_RS03220 0.81 -0.9
327,759 + HMPREF1058_RS03220 0.81 +1.7
327,760 - HMPREF1058_RS03220 0.81 +0.7
327,775 + HMPREF1058_RS03220 0.82 -0.8
327,776 - HMPREF1058_RS03220 0.82 -1.1
327,825 - HMPREF1058_RS03220 0.85 +0.5
327,830 + HMPREF1058_RS03220 0.86 -0.4
327,831 - HMPREF1058_RS03220 0.86 +0.5
327,939 - -0.5
328,001 + +2.0
328,002 - -2.2
328,004 - +0.0
328,004 - -0.4
328,005 + +0.1
328,009 + -0.6
328,021 + +1.3
328,086 - -0.3
328,261 + +0.6
328,376 - +0.4
328,397 + -0.2
328,398 - -0.6
328,453 + -0.8
328,503 + -0.5
328,504 - +3.1
328,504 - +0.7
328,506 + -0.7
328,515 - +0.9
328,543 + +0.9
328,586 - +1.7
328,620 - +2.1
328,620 - -0.2
328,638 + -2.2
328,781 + HMPREF1058_RS03215 0.21 +1.5
328,834 + HMPREF1058_RS03215 0.26 +1.9
328,834 + HMPREF1058_RS03215 0.26 +0.9
328,834 + HMPREF1058_RS03215 0.26 +0.2
328,835 - HMPREF1058_RS03215 0.26 +0.6
328,848 + HMPREF1058_RS03215 0.27 +1.2
328,852 + HMPREF1058_RS03215 0.28 +0.3
328,879 + HMPREF1058_RS03215 0.30 +0.7
328,880 - HMPREF1058_RS03215 0.30 +0.7
328,970 - +1.0
328,989 + HMPREF1058_RS03215 0.40 +0.7
328,996 + HMPREF1058_RS03215 0.41 +0.7
329,028 + HMPREF1058_RS03215 0.44 +0.8
329,028 + HMPREF1058_RS03215 0.44 +1.2
329,085 + HMPREF1058_RS03215 0.49 +0.9
329,143 - HMPREF1058_RS03215 0.54 +0.8
329,176 + HMPREF1058_RS03215 0.57 +1.2
329,177 - +0.8
329,234 + HMPREF1058_RS03215 0.63 +0.6
329,235 - HMPREF1058_RS03215 0.63 +0.8
329,266 + HMPREF1058_RS03215 0.66 +2.7
329,266 + HMPREF1058_RS03215 0.66 +1.4
329,309 - HMPREF1058_RS03215 0.70 +1.0
329,370 + HMPREF1058_RS03215 0.75 +0.8
329,370 + HMPREF1058_RS03215 0.75 +1.2
329,379 - HMPREF1058_RS03215 0.76 +1.6
329,379 - HMPREF1058_RS03215 0.76 -0.3
329,412 + HMPREF1058_RS03215 0.79 +0.1
329,412 + HMPREF1058_RS03215 0.79 +0.9
329,417 - HMPREF1058_RS03215 0.79 +1.2
329,473 + HMPREF1058_RS03215 0.85 +0.1
329,575 + +1.3
329,696 + -0.3
329,791 - +1.0
329,794 - -1.2
329,839 + -0.4
329,858 - -0.8
329,858 - +0.3
329,887 + -0.6
329,888 - -1.8
329,933 + -2.5
329,934 - +1.0
329,990 + +0.4
329,991 - -1.7
329,992 + +0.6
329,993 - -0.2
329,999 + +0.4
330,000 - -2.1
330,000 - -3.0
330,011 + -1.2
330,037 + -0.7
330,041 + -0.4
330,041 + -1.0
330,042 - -2.1
330,087 - +0.0
330,117 + -1.0
330,118 - -0.4
330,124 + -0.2
330,124 + -2.3
330,125 - HMPREF1058_RS03210 0.10 -0.5
330,125 - HMPREF1058_RS03210 0.10 -1.9
330,128 + HMPREF1058_RS03210 0.10 -0.2
330,129 - HMPREF1058_RS03210 0.10 -0.4
330,134 + HMPREF1058_RS03210 0.10 -2.5
330,135 - HMPREF1058_RS03210 0.10 -0.6
330,135 - HMPREF1058_RS03210 0.10 -0.8
330,135 - HMPREF1058_RS03210 0.10 -1.2
330,135 - HMPREF1058_RS03210 0.10 -2.0
330,136 + HMPREF1058_RS03210 0.10 +0.9
330,314 + HMPREF1058_RS03210 0.17 +0.6
330,315 - HMPREF1058_RS03210 0.17 -0.8
330,319 + HMPREF1058_RS03210 0.18 +0.0
330,320 - HMPREF1058_RS03210 0.18 -0.1
330,322 + HMPREF1058_RS03210 0.18 -0.8
330,323 - HMPREF1058_RS03210 0.18 -1.2
330,323 - HMPREF1058_RS03210 0.18 -0.6
330,330 + HMPREF1058_RS03210 0.18 +0.4
330,347 + HMPREF1058_RS03210 0.19 +0.1
330,371 + HMPREF1058_RS03210 0.20 -1.0
330,427 + HMPREF1058_RS03210 0.22 -2.1
330,431 - HMPREF1058_RS03210 0.22 -2.5
330,468 - HMPREF1058_RS03210 0.23 -0.3
330,468 - HMPREF1058_RS03210 0.23 -1.6
330,513 - HMPREF1058_RS03210 0.25 +0.2

Or see this region's nucleotide sequence