Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03205 and HMPREF1058_RS03200 are separated by 253 nucleotides HMPREF1058_RS03200 and HMPREF1058_RS03195 are separated by 213 nucleotides HMPREF1058_RS03195 and HMPREF1058_RS03190 overlap by 4 nucleotides HMPREF1058_RS03190 and HMPREF1058_RS03185 are separated by 14 nucleotides
HMPREF1058_RS03205: HMPREF1058_RS03205 - glycogen/starch synthase, at 332,461 to 334,131
_RS03205
HMPREF1058_RS03200: HMPREF1058_RS03200 - V-type ATP synthase subunit K, at 334,385 to 334,849
_RS03200
HMPREF1058_RS03195: HMPREF1058_RS03195 - V-type ATP synthase subunit I, at 335,063 to 336,868
_RS03195
HMPREF1058_RS03190: HMPREF1058_RS03190 - V-type ATP synthase subunit D, at 336,865 to 337,470
_RS03190
HMPREF1058_RS03185: HMPREF1058_RS03185 - V-type ATP synthase subunit B, at 337,485 to 338,807
_RS03185
Position (kb) 335
336
337 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 334.072 kb on - strand at 334.078 kb on + strand at 334.078 kb on + strand at 334.078 kb on + strand at 334.078 kb on + strand at 334.078 kb on + strand at 334.079 kb on - strand at 334.079 kb on - strand at 334.099 kb on + strand at 334.102 kb on - strand at 334.102 kb on - strand at 334.102 kb on - strand at 334.203 kb on + strand at 334.240 kb on - strand at 334.435 kb on + strand, within HMPREF1058_RS03200 at 334.436 kb on - strand, within HMPREF1058_RS03200 at 334.440 kb on + strand, within HMPREF1058_RS03200 at 334.472 kb on - strand, within HMPREF1058_RS03200 at 334.481 kb on + strand, within HMPREF1058_RS03200 at 334.482 kb on - strand, within HMPREF1058_RS03200 at 334.486 kb on + strand, within HMPREF1058_RS03200 at 334.556 kb on + strand, within HMPREF1058_RS03200 at 334.668 kb on + strand, within HMPREF1058_RS03200 at 334.668 kb on + strand, within HMPREF1058_RS03200 at 334.748 kb on - strand, within HMPREF1058_RS03200 at 334.770 kb on - strand, within HMPREF1058_RS03200 at 334.807 kb on + strand at 334.807 kb on + strand at 334.808 kb on - strand at 334.849 kb on + strand at 334.865 kb on - strand at 334.947 kb on + strand at 334.948 kb on - strand at 334.948 kb on - strand at 334.950 kb on + strand at 334.951 kb on - strand at 334.951 kb on - strand at 334.951 kb on - strand at 335.168 kb on - strand at 335.185 kb on + strand at 335.185 kb on + strand at 335.185 kb on + strand at 335.195 kb on + strand at 335.273 kb on + strand, within HMPREF1058_RS03195 at 335.288 kb on - strand, within HMPREF1058_RS03195 at 335.322 kb on + strand, within HMPREF1058_RS03195 at 335.323 kb on - strand, within HMPREF1058_RS03195 at 335.512 kb on + strand, within HMPREF1058_RS03195 at 335.513 kb on - strand, within HMPREF1058_RS03195 at 335.516 kb on + strand, within HMPREF1058_RS03195 at 335.523 kb on - strand, within HMPREF1058_RS03195 at 335.553 kb on + strand, within HMPREF1058_RS03195 at 335.608 kb on + strand, within HMPREF1058_RS03195 at 335.608 kb on + strand, within HMPREF1058_RS03195 at 335.641 kb on + strand, within HMPREF1058_RS03195 at 335.758 kb on + strand, within HMPREF1058_RS03195 at 335.758 kb on + strand, within HMPREF1058_RS03195 at 335.828 kb on - strand, within HMPREF1058_RS03195 at 335.828 kb on - strand, within HMPREF1058_RS03195 at 335.942 kb on - strand, within HMPREF1058_RS03195 at 335.958 kb on + strand, within HMPREF1058_RS03195 at 335.959 kb on - strand, within HMPREF1058_RS03195 at 335.999 kb on - strand, within HMPREF1058_RS03195 at 336.001 kb on + strand, within HMPREF1058_RS03195 at 336.013 kb on + strand, within HMPREF1058_RS03195 at 336.017 kb on + strand, within HMPREF1058_RS03195 at 336.018 kb on - strand, within HMPREF1058_RS03195 at 336.054 kb on + strand, within HMPREF1058_RS03195 at 336.179 kb on + strand, within HMPREF1058_RS03195 at 336.245 kb on + strand, within HMPREF1058_RS03195 at 336.246 kb on - strand, within HMPREF1058_RS03195 at 336.250 kb on + strand, within HMPREF1058_RS03195 at 336.250 kb on + strand, within HMPREF1058_RS03195 at 336.305 kb on - strand, within HMPREF1058_RS03195 at 336.305 kb on - strand, within HMPREF1058_RS03195 at 336.423 kb on + strand, within HMPREF1058_RS03195 at 336.643 kb on + strand, within HMPREF1058_RS03195 at 336.673 kb on + strand, within HMPREF1058_RS03195 at 336.694 kb on + strand at 336.820 kb on - strand at 336.959 kb on - strand, within HMPREF1058_RS03190 at 337.033 kb on - strand, within HMPREF1058_RS03190 at 337.068 kb on + strand, within HMPREF1058_RS03190 at 337.069 kb on - strand, within HMPREF1058_RS03190 at 337.112 kb on + strand, within HMPREF1058_RS03190 at 337.112 kb on + strand, within HMPREF1058_RS03190 at 337.113 kb on - strand, within HMPREF1058_RS03190 at 337.113 kb on - strand, within HMPREF1058_RS03190 at 337.114 kb on + strand, within HMPREF1058_RS03190 at 337.115 kb on - strand, within HMPREF1058_RS03190 at 337.384 kb on - strand, within HMPREF1058_RS03190 at 337.390 kb on - strand, within HMPREF1058_RS03190 at 337.449 kb on + strand at 337.482 kb on - strand at 337.653 kb on - strand, within HMPREF1058_RS03185 at 337.694 kb on + strand, within HMPREF1058_RS03185 at 337.695 kb on - strand, within HMPREF1058_RS03185 at 337.721 kb on - strand, within HMPREF1058_RS03185 at 337.773 kb on - strand, within HMPREF1058_RS03185
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 334,072 - +1.0 334,078 + +0.3 334,078 + -1.7 334,078 + -1.9 334,078 + -1.1 334,078 + -0.6 334,079 - +0.4 334,079 - -0.2 334,099 + -0.1 334,102 - -1.2 334,102 - +0.4 334,102 - -2.4 334,203 + -0.3 334,240 - +0.4 334,435 + HMPREF1058_RS03200 0.11 +2.0 334,436 - HMPREF1058_RS03200 0.11 +0.0 334,440 + HMPREF1058_RS03200 0.12 +1.0 334,472 - HMPREF1058_RS03200 0.19 +2.3 334,481 + HMPREF1058_RS03200 0.21 -0.8 334,482 - HMPREF1058_RS03200 0.21 +0.5 334,486 + HMPREF1058_RS03200 0.22 +0.0 334,556 + HMPREF1058_RS03200 0.37 -0.3 334,668 + HMPREF1058_RS03200 0.61 +2.9 334,668 + HMPREF1058_RS03200 0.61 +1.5 334,748 - HMPREF1058_RS03200 0.78 +1.6 334,770 - HMPREF1058_RS03200 0.83 +0.8 334,807 + -1.2 334,807 + +0.0 334,808 - +0.3 334,849 + +1.2 334,865 - +1.1 334,947 + +0.3 334,948 - -0.3 334,948 - +0.4 334,950 + +2.0 334,951 - -1.6 334,951 - +0.2 334,951 - -0.3 335,168 - +0.0 335,185 + +1.6 335,185 + -0.4 335,185 + +0.2 335,195 + +1.2 335,273 + HMPREF1058_RS03195 0.12 +0.6 335,288 - HMPREF1058_RS03195 0.12 +0.6 335,322 + HMPREF1058_RS03195 0.14 +1.5 335,323 - HMPREF1058_RS03195 0.14 -0.3 335,512 + HMPREF1058_RS03195 0.25 +1.0 335,513 - HMPREF1058_RS03195 0.25 +2.1 335,516 + HMPREF1058_RS03195 0.25 +0.5 335,523 - HMPREF1058_RS03195 0.25 -1.2 335,553 + HMPREF1058_RS03195 0.27 +1.4 335,608 + HMPREF1058_RS03195 0.30 +0.3 335,608 + HMPREF1058_RS03195 0.30 +0.7 335,641 + HMPREF1058_RS03195 0.32 +1.4 335,758 + HMPREF1058_RS03195 0.38 -0.9 335,758 + HMPREF1058_RS03195 0.38 +0.0 335,828 - HMPREF1058_RS03195 0.42 +2.2 335,828 - HMPREF1058_RS03195 0.42 +1.8 335,942 - HMPREF1058_RS03195 0.49 +2.0 335,958 + HMPREF1058_RS03195 0.50 +0.0 335,959 - HMPREF1058_RS03195 0.50 +1.0 335,999 - HMPREF1058_RS03195 0.52 +0.0 336,001 + HMPREF1058_RS03195 0.52 +1.0 336,013 + HMPREF1058_RS03195 0.53 +0.1 336,017 + HMPREF1058_RS03195 0.53 +1.0 336,018 - HMPREF1058_RS03195 0.53 +0.6 336,054 + HMPREF1058_RS03195 0.55 -0.2 336,179 + HMPREF1058_RS03195 0.62 +0.9 336,245 + HMPREF1058_RS03195 0.65 +1.1 336,246 - HMPREF1058_RS03195 0.66 +3.0 336,250 + HMPREF1058_RS03195 0.66 +0.3 336,250 + HMPREF1058_RS03195 0.66 +0.6 336,305 - HMPREF1058_RS03195 0.69 +0.9 336,305 - HMPREF1058_RS03195 0.69 +0.5 336,423 + HMPREF1058_RS03195 0.75 +0.0 336,643 + HMPREF1058_RS03195 0.87 +1.9 336,673 + HMPREF1058_RS03195 0.89 +0.7 336,694 + +1.6 336,820 - +0.5 336,959 - HMPREF1058_RS03190 0.16 -0.8 337,033 - HMPREF1058_RS03190 0.28 -0.2 337,068 + HMPREF1058_RS03190 0.33 -0.2 337,069 - HMPREF1058_RS03190 0.34 -0.6 337,112 + HMPREF1058_RS03190 0.41 +0.2 337,112 + HMPREF1058_RS03190 0.41 -1.9 337,113 - HMPREF1058_RS03190 0.41 +1.9 337,113 - HMPREF1058_RS03190 0.41 +1.7 337,114 + HMPREF1058_RS03190 0.41 -1.0 337,115 - HMPREF1058_RS03190 0.41 +1.4 337,384 - HMPREF1058_RS03190 0.86 +0.5 337,390 - HMPREF1058_RS03190 0.87 +2.0 337,449 + +1.8 337,482 - +0.8 337,653 - HMPREF1058_RS03185 0.13 +0.2 337,694 + HMPREF1058_RS03185 0.16 +0.2 337,695 - HMPREF1058_RS03185 0.16 +0.1 337,721 - HMPREF1058_RS03185 0.18 +1.3 337,773 - HMPREF1058_RS03185 0.22 -0.0
Or see this region's nucleotide sequence