Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03195 and HMPREF1058_RS03190 overlap by 4 nucleotides HMPREF1058_RS03190 and HMPREF1058_RS03185 are separated by 14 nucleotides HMPREF1058_RS03185 and HMPREF1058_RS03180 are separated by 35 nucleotides
HMPREF1058_RS03195: HMPREF1058_RS03195 - V-type ATP synthase subunit I, at 335,063 to 336,868
_RS03195
HMPREF1058_RS03190: HMPREF1058_RS03190 - V-type ATP synthase subunit D, at 336,865 to 337,470
_RS03190
HMPREF1058_RS03185: HMPREF1058_RS03185 - V-type ATP synthase subunit B, at 337,485 to 338,807
_RS03185
HMPREF1058_RS03180: HMPREF1058_RS03180 - V-type ATP synthase subunit A, at 338,843 to 340,597
_RS03180
Position (kb) 337
338
339 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 336.643 kb on + strand, within HMPREF1058_RS03195 at 336.673 kb on + strand, within HMPREF1058_RS03195 at 336.694 kb on + strand at 336.820 kb on - strand at 336.959 kb on - strand, within HMPREF1058_RS03190 at 337.033 kb on - strand, within HMPREF1058_RS03190 at 337.068 kb on + strand, within HMPREF1058_RS03190 at 337.069 kb on - strand, within HMPREF1058_RS03190 at 337.112 kb on + strand, within HMPREF1058_RS03190 at 337.112 kb on + strand, within HMPREF1058_RS03190 at 337.113 kb on - strand, within HMPREF1058_RS03190 at 337.113 kb on - strand, within HMPREF1058_RS03190 at 337.114 kb on + strand, within HMPREF1058_RS03190 at 337.115 kb on - strand, within HMPREF1058_RS03190 at 337.384 kb on - strand, within HMPREF1058_RS03190 at 337.390 kb on - strand, within HMPREF1058_RS03190 at 337.449 kb on + strand at 337.482 kb on - strand at 337.653 kb on - strand, within HMPREF1058_RS03185 at 337.694 kb on + strand, within HMPREF1058_RS03185 at 337.695 kb on - strand, within HMPREF1058_RS03185 at 337.721 kb on - strand, within HMPREF1058_RS03185 at 337.773 kb on - strand, within HMPREF1058_RS03185 at 337.875 kb on - strand, within HMPREF1058_RS03185 at 337.877 kb on - strand, within HMPREF1058_RS03185 at 337.908 kb on - strand, within HMPREF1058_RS03185 at 337.926 kb on - strand, within HMPREF1058_RS03185 at 337.926 kb on - strand, within HMPREF1058_RS03185 at 338.018 kb on + strand, within HMPREF1058_RS03185 at 338.060 kb on + strand, within HMPREF1058_RS03185 at 338.061 kb on - strand, within HMPREF1058_RS03185 at 338.078 kb on - strand, within HMPREF1058_RS03185 at 338.078 kb on - strand, within HMPREF1058_RS03185 at 338.087 kb on + strand, within HMPREF1058_RS03185 at 338.106 kb on + strand, within HMPREF1058_RS03185 at 338.117 kb on + strand, within HMPREF1058_RS03185 at 338.179 kb on - strand, within HMPREF1058_RS03185 at 338.198 kb on + strand, within HMPREF1058_RS03185 at 338.216 kb on + strand, within HMPREF1058_RS03185 at 338.244 kb on + strand, within HMPREF1058_RS03185 at 338.245 kb on - strand, within HMPREF1058_RS03185 at 338.257 kb on + strand, within HMPREF1058_RS03185 at 338.263 kb on + strand, within HMPREF1058_RS03185 at 338.399 kb on + strand, within HMPREF1058_RS03185 at 338.399 kb on + strand, within HMPREF1058_RS03185 at 338.400 kb on - strand, within HMPREF1058_RS03185 at 338.400 kb on - strand, within HMPREF1058_RS03185 at 338.601 kb on + strand, within HMPREF1058_RS03185 at 338.720 kb on - strand at 338.777 kb on + strand at 338.778 kb on - strand at 338.779 kb on + strand at 338.782 kb on - strand at 338.782 kb on - strand at 338.873 kb on + strand at 338.896 kb on - strand at 338.915 kb on - strand at 338.958 kb on + strand at 338.980 kb on + strand at 339.133 kb on - strand, within HMPREF1058_RS03180 at 339.245 kb on - strand, within HMPREF1058_RS03180 at 339.256 kb on + strand, within HMPREF1058_RS03180 at 339.258 kb on + strand, within HMPREF1058_RS03180 at 339.357 kb on + strand, within HMPREF1058_RS03180 at 339.425 kb on + strand, within HMPREF1058_RS03180 at 339.426 kb on - strand, within HMPREF1058_RS03180 at 339.445 kb on + strand, within HMPREF1058_RS03180 at 339.445 kb on + strand, within HMPREF1058_RS03180 at 339.446 kb on - strand at 339.473 kb on + strand, within HMPREF1058_RS03180 at 339.473 kb on + strand, within HMPREF1058_RS03180 at 339.473 kb on + strand, within HMPREF1058_RS03180 at 339.474 kb on - strand, within HMPREF1058_RS03180 at 339.478 kb on - strand, within HMPREF1058_RS03180 at 339.639 kb on + strand, within HMPREF1058_RS03180 at 339.666 kb on + strand, within HMPREF1058_RS03180 at 339.667 kb on - strand, within HMPREF1058_RS03180 at 339.715 kb on + strand, within HMPREF1058_RS03180 at 339.722 kb on - strand at 339.724 kb on + strand, within HMPREF1058_RS03180 at 339.724 kb on + strand, within HMPREF1058_RS03180 at 339.724 kb on + strand, within HMPREF1058_RS03180 at 339.724 kb on + strand, within HMPREF1058_RS03180 at 339.740 kb on - strand, within HMPREF1058_RS03180
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 336,643 + HMPREF1058_RS03195 0.87 +1.9 336,673 + HMPREF1058_RS03195 0.89 +0.7 336,694 + +1.6 336,820 - +0.5 336,959 - HMPREF1058_RS03190 0.16 -0.8 337,033 - HMPREF1058_RS03190 0.28 -0.2 337,068 + HMPREF1058_RS03190 0.33 -0.2 337,069 - HMPREF1058_RS03190 0.34 -0.6 337,112 + HMPREF1058_RS03190 0.41 +0.2 337,112 + HMPREF1058_RS03190 0.41 -1.9 337,113 - HMPREF1058_RS03190 0.41 +1.9 337,113 - HMPREF1058_RS03190 0.41 +1.7 337,114 + HMPREF1058_RS03190 0.41 -1.0 337,115 - HMPREF1058_RS03190 0.41 +1.4 337,384 - HMPREF1058_RS03190 0.86 +0.5 337,390 - HMPREF1058_RS03190 0.87 +2.0 337,449 + +1.8 337,482 - +0.8 337,653 - HMPREF1058_RS03185 0.13 +0.2 337,694 + HMPREF1058_RS03185 0.16 +0.2 337,695 - HMPREF1058_RS03185 0.16 +0.1 337,721 - HMPREF1058_RS03185 0.18 +1.3 337,773 - HMPREF1058_RS03185 0.22 -0.0 337,875 - HMPREF1058_RS03185 0.29 +1.3 337,877 - HMPREF1058_RS03185 0.30 +0.8 337,908 - HMPREF1058_RS03185 0.32 +0.7 337,926 - HMPREF1058_RS03185 0.33 +0.9 337,926 - HMPREF1058_RS03185 0.33 +0.4 338,018 + HMPREF1058_RS03185 0.40 +0.0 338,060 + HMPREF1058_RS03185 0.43 +0.9 338,061 - HMPREF1058_RS03185 0.44 +0.5 338,078 - HMPREF1058_RS03185 0.45 +1.0 338,078 - HMPREF1058_RS03185 0.45 +1.1 338,087 + HMPREF1058_RS03185 0.46 +2.4 338,106 + HMPREF1058_RS03185 0.47 +2.4 338,117 + HMPREF1058_RS03185 0.48 +0.4 338,179 - HMPREF1058_RS03185 0.52 +1.4 338,198 + HMPREF1058_RS03185 0.54 +0.2 338,216 + HMPREF1058_RS03185 0.55 +0.1 338,244 + HMPREF1058_RS03185 0.57 +0.5 338,245 - HMPREF1058_RS03185 0.57 +0.9 338,257 + HMPREF1058_RS03185 0.58 +0.2 338,263 + HMPREF1058_RS03185 0.59 +0.2 338,399 + HMPREF1058_RS03185 0.69 +0.7 338,399 + HMPREF1058_RS03185 0.69 -2.4 338,400 - HMPREF1058_RS03185 0.69 +0.8 338,400 - HMPREF1058_RS03185 0.69 +0.0 338,601 + HMPREF1058_RS03185 0.84 +0.8 338,720 - +2.0 338,777 + +3.3 338,778 - +1.8 338,779 + +0.7 338,782 - +1.4 338,782 - +0.5 338,873 + +1.7 338,896 - +0.7 338,915 - +0.0 338,958 + +1.3 338,980 + -0.6 339,133 - HMPREF1058_RS03180 0.17 -0.3 339,245 - HMPREF1058_RS03180 0.23 +2.9 339,256 + HMPREF1058_RS03180 0.24 -1.3 339,258 + HMPREF1058_RS03180 0.24 +1.6 339,357 + HMPREF1058_RS03180 0.29 +0.6 339,425 + HMPREF1058_RS03180 0.33 -1.3 339,426 - HMPREF1058_RS03180 0.33 +0.9 339,445 + HMPREF1058_RS03180 0.34 +2.1 339,445 + HMPREF1058_RS03180 0.34 +0.8 339,446 - +0.4 339,473 + HMPREF1058_RS03180 0.36 +0.0 339,473 + HMPREF1058_RS03180 0.36 +1.4 339,473 + HMPREF1058_RS03180 0.36 +1.7 339,474 - HMPREF1058_RS03180 0.36 +1.4 339,478 - HMPREF1058_RS03180 0.36 +0.4 339,639 + HMPREF1058_RS03180 0.45 -0.6 339,666 + HMPREF1058_RS03180 0.47 -0.0 339,667 - HMPREF1058_RS03180 0.47 -0.1 339,715 + HMPREF1058_RS03180 0.50 +0.0 339,722 - +0.1 339,724 + HMPREF1058_RS03180 0.50 +1.0 339,724 + HMPREF1058_RS03180 0.50 +1.3 339,724 + HMPREF1058_RS03180 0.50 +1.7 339,724 + HMPREF1058_RS03180 0.50 +0.9 339,740 - HMPREF1058_RS03180 0.51 -1.2
Or see this region's nucleotide sequence