Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03180 and HMPREF1058_RS03175 are separated by 18 nucleotides HMPREF1058_RS03175 and HMPREF1058_RS03170 are separated by 9 nucleotides HMPREF1058_RS03170 and HMPREF1058_RS03165 are separated by 256 nucleotides
HMPREF1058_RS03180: HMPREF1058_RS03180 - V-type ATP synthase subunit A, at 338,843 to 340,597
_RS03180
HMPREF1058_RS03175: HMPREF1058_RS03175 - DUF2764 domain-containing protein, at 340,616 to 341,452
_RS03175
HMPREF1058_RS03170: HMPREF1058_RS03170 - hypothetical protein, at 341,462 to 342,052
_RS03170
HMPREF1058_RS03165: HMPREF1058_RS03165 - 5S ribosomal RNA, at 342,309 to 342,419
_RS03165
Position (kb) 340
341
342 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 339.639 kb on + strand, within HMPREF1058_RS03180 at 339.666 kb on + strand, within HMPREF1058_RS03180 at 339.667 kb on - strand, within HMPREF1058_RS03180 at 339.715 kb on + strand, within HMPREF1058_RS03180 at 339.722 kb on - strand at 339.724 kb on + strand, within HMPREF1058_RS03180 at 339.724 kb on + strand, within HMPREF1058_RS03180 at 339.724 kb on + strand, within HMPREF1058_RS03180 at 339.724 kb on + strand, within HMPREF1058_RS03180 at 339.740 kb on - strand, within HMPREF1058_RS03180 at 339.901 kb on + strand, within HMPREF1058_RS03180 at 339.921 kb on - strand, within HMPREF1058_RS03180 at 339.943 kb on + strand, within HMPREF1058_RS03180 at 339.943 kb on + strand, within HMPREF1058_RS03180 at 339.970 kb on + strand, within HMPREF1058_RS03180 at 340.003 kb on + strand, within HMPREF1058_RS03180 at 340.094 kb on - strand, within HMPREF1058_RS03180 at 340.094 kb on - strand, within HMPREF1058_RS03180 at 340.094 kb on - strand, within HMPREF1058_RS03180 at 340.096 kb on - strand, within HMPREF1058_RS03180 at 340.126 kb on + strand, within HMPREF1058_RS03180 at 340.128 kb on + strand, within HMPREF1058_RS03180 at 340.132 kb on + strand, within HMPREF1058_RS03180 at 340.238 kb on + strand, within HMPREF1058_RS03180 at 340.278 kb on + strand, within HMPREF1058_RS03180 at 340.279 kb on - strand, within HMPREF1058_RS03180 at 340.446 kb on + strand at 340.447 kb on - strand at 340.547 kb on - strand at 340.597 kb on + strand at 340.597 kb on + strand at 340.598 kb on - strand at 340.640 kb on + strand at 340.814 kb on + strand, within HMPREF1058_RS03175 at 340.991 kb on + strand, within HMPREF1058_RS03175 at 341.003 kb on + strand, within HMPREF1058_RS03175 at 341.004 kb on - strand, within HMPREF1058_RS03175 at 341.004 kb on - strand, within HMPREF1058_RS03175 at 341.070 kb on + strand, within HMPREF1058_RS03175 at 341.079 kb on + strand, within HMPREF1058_RS03175 at 341.091 kb on - strand, within HMPREF1058_RS03175 at 341.136 kb on + strand, within HMPREF1058_RS03175 at 341.161 kb on - strand, within HMPREF1058_RS03175 at 341.170 kb on - strand, within HMPREF1058_RS03175 at 341.257 kb on + strand, within HMPREF1058_RS03175 at 341.257 kb on + strand, within HMPREF1058_RS03175 at 341.384 kb on - strand at 341.385 kb on + strand at 341.463 kb on + strand at 341.477 kb on + strand at 341.653 kb on + strand, within HMPREF1058_RS03170 at 341.726 kb on - strand, within HMPREF1058_RS03170 at 341.739 kb on + strand, within HMPREF1058_RS03170 at 341.739 kb on + strand, within HMPREF1058_RS03170 at 341.804 kb on + strand, within HMPREF1058_RS03170 at 341.805 kb on - strand, within HMPREF1058_RS03170 at 341.805 kb on - strand, within HMPREF1058_RS03170 at 341.849 kb on - strand at 341.898 kb on - strand, within HMPREF1058_RS03170 at 341.965 kb on + strand, within HMPREF1058_RS03170 at 341.971 kb on + strand, within HMPREF1058_RS03170 at 342.044 kb on - strand at 342.058 kb on + strand at 342.099 kb on - strand at 342.195 kb on + strand at 342.196 kb on - strand at 342.227 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 339,639 + HMPREF1058_RS03180 0.45 -0.6 339,666 + HMPREF1058_RS03180 0.47 -0.0 339,667 - HMPREF1058_RS03180 0.47 -0.1 339,715 + HMPREF1058_RS03180 0.50 +0.0 339,722 - +0.1 339,724 + HMPREF1058_RS03180 0.50 +1.0 339,724 + HMPREF1058_RS03180 0.50 +1.3 339,724 + HMPREF1058_RS03180 0.50 +1.7 339,724 + HMPREF1058_RS03180 0.50 +0.9 339,740 - HMPREF1058_RS03180 0.51 -1.2 339,901 + HMPREF1058_RS03180 0.60 +0.6 339,921 - HMPREF1058_RS03180 0.61 +1.8 339,943 + HMPREF1058_RS03180 0.63 +1.1 339,943 + HMPREF1058_RS03180 0.63 -0.0 339,970 + HMPREF1058_RS03180 0.64 +1.0 340,003 + HMPREF1058_RS03180 0.66 +2.0 340,094 - HMPREF1058_RS03180 0.71 -1.6 340,094 - HMPREF1058_RS03180 0.71 +0.1 340,094 - HMPREF1058_RS03180 0.71 +1.2 340,096 - HMPREF1058_RS03180 0.71 -1.9 340,126 + HMPREF1058_RS03180 0.73 +1.3 340,128 + HMPREF1058_RS03180 0.73 +1.4 340,132 + HMPREF1058_RS03180 0.73 +1.3 340,238 + HMPREF1058_RS03180 0.79 +0.9 340,278 + HMPREF1058_RS03180 0.82 +1.5 340,279 - HMPREF1058_RS03180 0.82 +0.6 340,446 + +1.5 340,447 - +1.4 340,547 - +0.4 340,597 + +0.8 340,597 + -0.7 340,598 - +2.5 340,640 + -0.7 340,814 + HMPREF1058_RS03175 0.24 +1.0 340,991 + HMPREF1058_RS03175 0.45 +1.1 341,003 + HMPREF1058_RS03175 0.46 +1.6 341,004 - HMPREF1058_RS03175 0.46 -0.9 341,004 - HMPREF1058_RS03175 0.46 -0.2 341,070 + HMPREF1058_RS03175 0.54 +2.9 341,079 + HMPREF1058_RS03175 0.55 +1.6 341,091 - HMPREF1058_RS03175 0.57 +0.1 341,136 + HMPREF1058_RS03175 0.62 +3.9 341,161 - HMPREF1058_RS03175 0.65 -0.8 341,170 - HMPREF1058_RS03175 0.66 +1.2 341,257 + HMPREF1058_RS03175 0.77 +1.3 341,257 + HMPREF1058_RS03175 0.77 +2.0 341,384 - +2.9 341,385 + +0.4 341,463 + +1.8 341,477 + +0.6 341,653 + HMPREF1058_RS03170 0.32 -0.5 341,726 - HMPREF1058_RS03170 0.45 +1.5 341,739 + HMPREF1058_RS03170 0.47 -0.1 341,739 + HMPREF1058_RS03170 0.47 -0.3 341,804 + HMPREF1058_RS03170 0.58 +0.9 341,805 - HMPREF1058_RS03170 0.58 +0.1 341,805 - HMPREF1058_RS03170 0.58 +1.0 341,849 - -0.3 341,898 - HMPREF1058_RS03170 0.74 +0.3 341,965 + HMPREF1058_RS03170 0.85 +1.2 341,971 + HMPREF1058_RS03170 0.86 +0.7 342,044 - +2.0 342,058 + +0.4 342,099 - +0.7 342,195 + +0.6 342,196 - -0.8 342,227 - -0.7
Or see this region's nucleotide sequence