Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03140 and HMPREF1058_RS03135 are separated by 78 nucleotides HMPREF1058_RS03135 and HMPREF1058_RS03130 are separated by 576 nucleotides HMPREF1058_RS03130 and HMPREF1058_RS21125 are separated by 11 nucleotides HMPREF1058_RS21125 and HMPREF1058_RS03125 are separated by 104 nucleotides
HMPREF1058_RS03140: HMPREF1058_RS03140 - 23S ribosomal RNA, at 1,985 to 4,872
_RS03140
HMPREF1058_RS03135: HMPREF1058_RS03135 - 5S ribosomal RNA, at 4,951 to 5,061
_RS03135
HMPREF1058_RS03130: HMPREF1058_RS03130 - DUF177 domain-containing protein, at 5,638 to 6,171
_RS03130
HMPREF1058_RS21125: HMPREF1058_RS21125 - 50S ribosomal protein L32, at 6,183 to 6,368
_RS21125
HMPREF1058_RS03125: HMPREF1058_RS03125 - ketoacyl-ACP synthase III, at 6,473 to 7,477
_RS03125
Position (kb) 5
6
7 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4.850 kb on + strand at 4.962 kb on + strand, within HMPREF1058_RS03135 at 4.962 kb on + strand, within HMPREF1058_RS03135 at 5.004 kb on + strand, within HMPREF1058_RS03135 at 5.290 kb on - strand at 5.290 kb on - strand at 5.363 kb on + strand at 5.366 kb on + strand at 5.366 kb on + strand at 5.367 kb on - strand at 5.414 kb on - strand at 5.429 kb on - strand at 5.485 kb on - strand at 5.550 kb on + strand at 5.589 kb on + strand at 5.589 kb on + strand at 5.617 kb on + strand at 5.617 kb on + strand at 5.617 kb on + strand at 5.619 kb on + strand at 5.659 kb on + strand at 5.900 kb on + strand, within HMPREF1058_RS03130 at 5.906 kb on + strand, within HMPREF1058_RS03130 at 5.906 kb on + strand, within HMPREF1058_RS03130 at 5.950 kb on + strand, within HMPREF1058_RS03130 at 5.970 kb on + strand, within HMPREF1058_RS03130 at 6.077 kb on + strand, within HMPREF1058_RS03130 at 6.125 kb on + strand at 6.162 kb on + strand at 6.461 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 4,850 + +2.1 4,962 + HMPREF1058_RS03135 0.10 -0.1 4,962 + HMPREF1058_RS03135 0.10 +1.4 5,004 + HMPREF1058_RS03135 0.48 -0.7 5,290 - +1.3 5,290 - +0.4 5,363 + +0.5 5,366 + +0.0 5,366 + -0.6 5,367 - -0.9 5,414 - -1.6 5,429 - +0.4 5,485 - -0.5 5,550 + -0.9 5,589 + +1.6 5,589 + +0.2 5,617 + +0.9 5,617 + +1.4 5,617 + +1.9 5,619 + +1.3 5,659 + +1.4 5,900 + HMPREF1058_RS03130 0.49 +1.0 5,906 + HMPREF1058_RS03130 0.50 +1.1 5,906 + HMPREF1058_RS03130 0.50 +1.2 5,950 + HMPREF1058_RS03130 0.58 -1.1 5,970 + HMPREF1058_RS03130 0.62 +1.4 6,077 + HMPREF1058_RS03130 0.82 -1.6 6,125 + -0.2 6,162 + -1.9 6,461 + -1.0
Or see this region's nucleotide sequence