Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS03050

Experiment: Xylan from corn core 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS03055 and HMPREF1058_RS03050 are separated by 31 nucleotidesHMPREF1058_RS03050 and HMPREF1058_RS03045 are separated by 272 nucleotidesHMPREF1058_RS03045 and HMPREF1058_RS03040 overlap by 4 nucleotides HMPREF1058_RS03055: HMPREF1058_RS03055 - hypothetical protein, at 22,254 to 23,282 _RS03055 HMPREF1058_RS03050: HMPREF1058_RS03050 - hypothetical protein, at 23,314 to 23,535 _RS03050 HMPREF1058_RS03045: HMPREF1058_RS03045 - hypothetical protein, at 23,808 to 24,461 _RS03045 HMPREF1058_RS03040: HMPREF1058_RS03040 - thioredoxin family protein, at 24,458 to 24,967 _RS03040 Position (kb) 23 24Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 22.352 kb on + strandat 22.352 kb on + strandat 22.358 kb on + strand, within HMPREF1058_RS03055at 22.365 kb on - strand, within HMPREF1058_RS03055at 22.373 kb on + strand, within HMPREF1058_RS03055at 22.373 kb on + strand, within HMPREF1058_RS03055at 22.374 kb on - strand, within HMPREF1058_RS03055at 22.418 kb on + strand, within HMPREF1058_RS03055at 22.446 kb on + strand, within HMPREF1058_RS03055at 22.493 kb on + strand, within HMPREF1058_RS03055at 22.508 kb on + strand, within HMPREF1058_RS03055at 22.607 kb on + strand, within HMPREF1058_RS03055at 22.618 kb on + strand, within HMPREF1058_RS03055at 22.621 kb on + strand, within HMPREF1058_RS03055at 22.621 kb on + strand, within HMPREF1058_RS03055at 22.621 kb on + strand, within HMPREF1058_RS03055at 22.622 kb on - strand, within HMPREF1058_RS03055at 22.624 kb on - strand, within HMPREF1058_RS03055at 22.624 kb on - strand, within HMPREF1058_RS03055at 22.645 kb on + strand, within HMPREF1058_RS03055at 22.645 kb on + strand, within HMPREF1058_RS03055at 22.706 kb on - strand, within HMPREF1058_RS03055at 22.775 kb on - strand, within HMPREF1058_RS03055at 22.808 kb on - strand, within HMPREF1058_RS03055at 22.808 kb on - strand, within HMPREF1058_RS03055at 22.808 kb on - strand, within HMPREF1058_RS03055at 22.809 kb on + strand, within HMPREF1058_RS03055at 22.810 kb on - strand, within HMPREF1058_RS03055at 22.810 kb on - strand, within HMPREF1058_RS03055at 22.810 kb on - strand, within HMPREF1058_RS03055at 22.815 kb on - strand, within HMPREF1058_RS03055at 22.883 kb on + strand, within HMPREF1058_RS03055at 22.904 kb on + strand, within HMPREF1058_RS03055at 22.904 kb on + strand, within HMPREF1058_RS03055at 22.916 kb on - strand, within HMPREF1058_RS03055at 22.924 kb on + strand, within HMPREF1058_RS03055at 22.933 kb on - strand, within HMPREF1058_RS03055at 22.968 kb on - strand, within HMPREF1058_RS03055at 22.986 kb on - strand, within HMPREF1058_RS03055at 23.011 kb on - strand, within HMPREF1058_RS03055at 23.018 kb on - strand, within HMPREF1058_RS03055at 23.061 kb on - strand, within HMPREF1058_RS03055at 23.087 kb on - strand, within HMPREF1058_RS03055at 23.087 kb on - strand, within HMPREF1058_RS03055at 23.087 kb on - strand, within HMPREF1058_RS03055at 23.099 kb on + strand, within HMPREF1058_RS03055at 23.100 kb on - strand, within HMPREF1058_RS03055at 23.149 kb on - strand, within HMPREF1058_RS03055at 23.180 kb on + strandat 23.181 kb on - strandat 23.181 kb on - strandat 23.185 kb on + strandat 23.199 kb on + strandat 23.200 kb on - strandat 23.201 kb on + strandat 23.201 kb on + strandat 23.201 kb on + strandat 23.202 kb on - strandat 23.205 kb on - strandat 23.233 kb on + strandat 23.251 kb on + strandat 23.283 kb on + strandat 23.283 kb on + strandat 23.304 kb on - strandat 23.313 kb on + strandat 23.451 kb on - strand, within HMPREF1058_RS03050at 23.487 kb on - strand, within HMPREF1058_RS03050at 23.537 kb on - strandat 23.576 kb on + strandat 23.620 kb on + strandat 23.624 kb on + strandat 23.624 kb on + strandat 23.625 kb on - strandat 23.631 kb on - strandat 23.631 kb on - strandat 23.633 kb on - strandat 23.633 kb on - strandat 23.656 kb on + strandat 23.659 kb on - strandat 23.659 kb on - strandat 23.672 kb on + strandat 23.685 kb on - strandat 23.691 kb on - strandat 23.769 kb on + strandat 23.817 kb on - strandat 23.829 kb on + strandat 23.830 kb on - strandat 23.869 kb on + strandat 23.895 kb on + strand, within HMPREF1058_RS03045at 23.895 kb on + strand, within HMPREF1058_RS03045at 23.896 kb on - strand, within HMPREF1058_RS03045at 23.896 kb on - strand, within HMPREF1058_RS03045at 23.900 kb on - strand, within HMPREF1058_RS03045at 23.912 kb on + strand, within HMPREF1058_RS03045at 23.916 kb on - strand, within HMPREF1058_RS03045at 23.930 kb on - strand, within HMPREF1058_RS03045at 23.936 kb on + strand, within HMPREF1058_RS03045at 23.936 kb on + strand, within HMPREF1058_RS03045at 23.937 kb on - strand, within HMPREF1058_RS03045at 23.937 kb on - strand, within HMPREF1058_RS03045at 23.937 kb on - strand, within HMPREF1058_RS03045at 23.937 kb on - strand, within HMPREF1058_RS03045at 23.937 kb on - strand, within HMPREF1058_RS03045at 24.028 kb on + strand, within HMPREF1058_RS03045at 24.029 kb on - strand, within HMPREF1058_RS03045at 24.043 kb on - strand, within HMPREF1058_RS03045at 24.046 kb on + strand, within HMPREF1058_RS03045at 24.053 kb on + strand, within HMPREF1058_RS03045at 24.053 kb on + strand, within HMPREF1058_RS03045at 24.054 kb on - strand, within HMPREF1058_RS03045at 24.054 kb on - strand, within HMPREF1058_RS03045at 24.056 kb on - strand, within HMPREF1058_RS03045at 24.063 kb on + strand, within HMPREF1058_RS03045at 24.075 kb on - strand, within HMPREF1058_RS03045at 24.076 kb on + strand, within HMPREF1058_RS03045at 24.077 kb on - strand, within HMPREF1058_RS03045at 24.077 kb on - strand, within HMPREF1058_RS03045at 24.077 kb on - strand, within HMPREF1058_RS03045at 24.080 kb on - strand, within HMPREF1058_RS03045at 24.082 kb on + strand, within HMPREF1058_RS03045at 24.133 kb on + strand, within HMPREF1058_RS03045at 24.218 kb on - strand, within HMPREF1058_RS03045at 24.236 kb on - strand, within HMPREF1058_RS03045at 24.253 kb on + strand, within HMPREF1058_RS03045at 24.254 kb on - strand, within HMPREF1058_RS03045at 24.257 kb on + strand, within HMPREF1058_RS03045at 24.302 kb on - strand, within HMPREF1058_RS03045at 24.302 kb on - strand, within HMPREF1058_RS03045at 24.328 kb on + strand, within HMPREF1058_RS03045at 24.346 kb on + strand, within HMPREF1058_RS03045at 24.347 kb on - strand, within HMPREF1058_RS03045at 24.372 kb on - strand, within HMPREF1058_RS03045at 24.396 kb on + strandat 24.422 kb on + strandat 24.422 kb on + strandat 24.434 kb on - strandat 24.445 kb on + strandat 24.445 kb on + strandat 24.446 kb on - strandat 24.446 kb on - strandat 24.449 kb on + strandat 24.450 kb on - strandat 24.455 kb on - strandat 24.467 kb on + strandat 24.471 kb on + strandat 24.495 kb on + strandat 24.517 kb on + strand, within HMPREF1058_RS03040at 24.517 kb on + strand, within HMPREF1058_RS03040at 24.518 kb on - strand, within HMPREF1058_RS03040at 24.520 kb on - strand, within HMPREF1058_RS03040

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C)
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22,352 + +0.4
22,352 + +0.0
22,358 + HMPREF1058_RS03055 0.10 -0.2
22,365 - HMPREF1058_RS03055 0.11 +2.0
22,373 + HMPREF1058_RS03055 0.12 +1.1
22,373 + HMPREF1058_RS03055 0.12 -0.8
22,374 - HMPREF1058_RS03055 0.12 -0.7
22,418 + HMPREF1058_RS03055 0.16 +0.4
22,446 + HMPREF1058_RS03055 0.19 -0.4
22,493 + HMPREF1058_RS03055 0.23 -0.3
22,508 + HMPREF1058_RS03055 0.25 -0.2
22,607 + HMPREF1058_RS03055 0.34 -0.1
22,618 + HMPREF1058_RS03055 0.35 +1.0
22,621 + HMPREF1058_RS03055 0.36 -0.6
22,621 + HMPREF1058_RS03055 0.36 -0.9
22,621 + HMPREF1058_RS03055 0.36 -1.1
22,622 - HMPREF1058_RS03055 0.36 -0.8
22,624 - HMPREF1058_RS03055 0.36 +0.6
22,624 - HMPREF1058_RS03055 0.36 +4.0
22,645 + HMPREF1058_RS03055 0.38 -0.8
22,645 + HMPREF1058_RS03055 0.38 -0.7
22,706 - HMPREF1058_RS03055 0.44 -0.5
22,775 - HMPREF1058_RS03055 0.51 -0.1
22,808 - HMPREF1058_RS03055 0.54 -0.0
22,808 - HMPREF1058_RS03055 0.54 -0.7
22,808 - HMPREF1058_RS03055 0.54 -0.3
22,809 + HMPREF1058_RS03055 0.54 -1.2
22,810 - HMPREF1058_RS03055 0.54 -0.6
22,810 - HMPREF1058_RS03055 0.54 +0.5
22,810 - HMPREF1058_RS03055 0.54 +1.1
22,815 - HMPREF1058_RS03055 0.55 -0.7
22,883 + HMPREF1058_RS03055 0.61 -0.5
22,904 + HMPREF1058_RS03055 0.63 -0.0
22,904 + HMPREF1058_RS03055 0.63 -0.2
22,916 - HMPREF1058_RS03055 0.64 -0.1
22,924 + HMPREF1058_RS03055 0.65 -1.0
22,933 - HMPREF1058_RS03055 0.66 -0.6
22,968 - HMPREF1058_RS03055 0.69 -0.2
22,986 - HMPREF1058_RS03055 0.71 +1.6
23,011 - HMPREF1058_RS03055 0.74 -0.6
23,018 - HMPREF1058_RS03055 0.74 +0.6
23,061 - HMPREF1058_RS03055 0.78 -1.9
23,087 - HMPREF1058_RS03055 0.81 -0.2
23,087 - HMPREF1058_RS03055 0.81 -0.1
23,087 - HMPREF1058_RS03055 0.81 -1.0
23,099 + HMPREF1058_RS03055 0.82 -0.8
23,100 - HMPREF1058_RS03055 0.82 +1.3
23,149 - HMPREF1058_RS03055 0.87 +0.6
23,180 + -0.8
23,181 - +0.0
23,181 - +0.3
23,185 + +0.4
23,199 + +1.4
23,200 - +0.1
23,201 + +0.1
23,201 + +1.0
23,201 + -2.4
23,202 - +0.2
23,205 - +0.2
23,233 + -1.5
23,251 + -0.0
23,283 + -0.3
23,283 + +0.2
23,304 - +1.0
23,313 + +0.0
23,451 - HMPREF1058_RS03050 0.62 +0.2
23,487 - HMPREF1058_RS03050 0.78 +2.0
23,537 - +0.2
23,576 + -0.4
23,620 + -1.6
23,624 + -0.2
23,624 + -1.5
23,625 - -0.6
23,631 - -0.5
23,631 - -0.4
23,633 - -0.3
23,633 - +0.9
23,656 + +1.0
23,659 - +0.1
23,659 - -0.1
23,672 + -0.2
23,685 - +1.1
23,691 - -1.6
23,769 + -0.3
23,817 - +1.2
23,829 + +2.5
23,830 - +0.6
23,869 + -1.4
23,895 + HMPREF1058_RS03045 0.13 +0.5
23,895 + HMPREF1058_RS03045 0.13 +0.6
23,896 - HMPREF1058_RS03045 0.13 -0.1
23,896 - HMPREF1058_RS03045 0.13 -3.1
23,900 - HMPREF1058_RS03045 0.14 -0.1
23,912 + HMPREF1058_RS03045 0.16 +1.4
23,916 - HMPREF1058_RS03045 0.17 -0.3
23,930 - HMPREF1058_RS03045 0.19 +1.2
23,936 + HMPREF1058_RS03045 0.20 -1.8
23,936 + HMPREF1058_RS03045 0.20 -0.6
23,937 - HMPREF1058_RS03045 0.20 -1.3
23,937 - HMPREF1058_RS03045 0.20 -1.1
23,937 - HMPREF1058_RS03045 0.20 -1.1
23,937 - HMPREF1058_RS03045 0.20 -0.4
23,937 - HMPREF1058_RS03045 0.20 +0.5
24,028 + HMPREF1058_RS03045 0.34 -0.5
24,029 - HMPREF1058_RS03045 0.34 -1.5
24,043 - HMPREF1058_RS03045 0.36 +0.2
24,046 + HMPREF1058_RS03045 0.36 -0.8
24,053 + HMPREF1058_RS03045 0.37 +0.4
24,053 + HMPREF1058_RS03045 0.37 -0.7
24,054 - HMPREF1058_RS03045 0.38 +0.1
24,054 - HMPREF1058_RS03045 0.38 +1.7
24,056 - HMPREF1058_RS03045 0.38 -0.4
24,063 + HMPREF1058_RS03045 0.39 +0.2
24,075 - HMPREF1058_RS03045 0.41 +0.1
24,076 + HMPREF1058_RS03045 0.41 +0.0
24,077 - HMPREF1058_RS03045 0.41 -0.0
24,077 - HMPREF1058_RS03045 0.41 +0.4
24,077 - HMPREF1058_RS03045 0.41 -0.1
24,080 - HMPREF1058_RS03045 0.42 -1.4
24,082 + HMPREF1058_RS03045 0.42 -0.8
24,133 + HMPREF1058_RS03045 0.50 -0.3
24,218 - HMPREF1058_RS03045 0.63 +0.9
24,236 - HMPREF1058_RS03045 0.65 -1.4
24,253 + HMPREF1058_RS03045 0.68 +0.3
24,254 - HMPREF1058_RS03045 0.68 +1.0
24,257 + HMPREF1058_RS03045 0.69 -0.1
24,302 - HMPREF1058_RS03045 0.76 -0.2
24,302 - HMPREF1058_RS03045 0.76 -0.5
24,328 + HMPREF1058_RS03045 0.80 +0.4
24,346 + HMPREF1058_RS03045 0.82 -0.5
24,347 - HMPREF1058_RS03045 0.82 -1.1
24,372 - HMPREF1058_RS03045 0.86 +1.0
24,396 + -1.1
24,422 + -0.8
24,422 + -1.0
24,434 - -0.1
24,445 + -0.7
24,445 + -0.5
24,446 - +0.7
24,446 - -0.2
24,449 + -1.6
24,450 - -1.4
24,455 - -1.4
24,467 + -0.4
24,471 + -2.0
24,495 + -0.7
24,517 + HMPREF1058_RS03040 0.12 -1.4
24,517 + HMPREF1058_RS03040 0.12 -1.1
24,518 - HMPREF1058_RS03040 0.12 +0.1
24,520 - HMPREF1058_RS03040 0.12 +0.3

Or see this region's nucleotide sequence