Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02880 and HMPREF1058_RS02875 are separated by 6 nucleotides HMPREF1058_RS02875 and HMPREF1058_RS02870 are separated by 145 nucleotides
HMPREF1058_RS02880: HMPREF1058_RS02880 - tRNA 2-thiouridine(34) synthase MnmA, at 63,779 to 64,843
_RS02880
HMPREF1058_RS02875: HMPREF1058_RS02875 - cysteine synthase A, at 64,850 to 65,800
_RS02875
HMPREF1058_RS02870: HMPREF1058_RS02870 - endonuclease/exonuclease/phosphatase family protein, at 65,946 to 66,884
_RS02870
Position (kb) 64
65
66 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 63.937 kb on + strand, within HMPREF1058_RS02880 at 63.983 kb on + strand, within HMPREF1058_RS02880 at 64.033 kb on - strand, within HMPREF1058_RS02880 at 64.046 kb on - strand, within HMPREF1058_RS02880 at 64.065 kb on + strand, within HMPREF1058_RS02880 at 64.066 kb on - strand, within HMPREF1058_RS02880 at 64.073 kb on - strand, within HMPREF1058_RS02880 at 64.073 kb on - strand, within HMPREF1058_RS02880 at 64.083 kb on - strand, within HMPREF1058_RS02880 at 64.084 kb on + strand, within HMPREF1058_RS02880 at 64.118 kb on + strand, within HMPREF1058_RS02880 at 64.248 kb on + strand, within HMPREF1058_RS02880 at 64.248 kb on + strand, within HMPREF1058_RS02880 at 64.392 kb on - strand, within HMPREF1058_RS02880 at 64.560 kb on - strand, within HMPREF1058_RS02880 at 64.560 kb on - strand, within HMPREF1058_RS02880 at 64.576 kb on + strand, within HMPREF1058_RS02880 at 64.605 kb on + strand, within HMPREF1058_RS02880 at 64.613 kb on + strand, within HMPREF1058_RS02880 at 64.685 kb on - strand, within HMPREF1058_RS02880 at 64.688 kb on + strand, within HMPREF1058_RS02880 at 64.689 kb on - strand, within HMPREF1058_RS02880 at 64.689 kb on - strand, within HMPREF1058_RS02880 at 64.689 kb on - strand, within HMPREF1058_RS02880 at 64.689 kb on - strand, within HMPREF1058_RS02880 at 64.771 kb on - strand at 64.793 kb on + strand at 64.794 kb on - strand at 64.835 kb on + strand at 64.835 kb on + strand at 64.835 kb on + strand at 64.851 kb on + strand at 64.925 kb on + strand at 64.977 kb on + strand, within HMPREF1058_RS02875 at 64.977 kb on + strand, within HMPREF1058_RS02875 at 64.978 kb on - strand, within HMPREF1058_RS02875 at 65.132 kb on + strand, within HMPREF1058_RS02875 at 65.132 kb on + strand, within HMPREF1058_RS02875 at 65.132 kb on + strand, within HMPREF1058_RS02875 at 65.201 kb on + strand, within HMPREF1058_RS02875 at 65.202 kb on - strand, within HMPREF1058_RS02875 at 65.202 kb on - strand, within HMPREF1058_RS02875 at 65.202 kb on - strand, within HMPREF1058_RS02875 at 65.323 kb on + strand, within HMPREF1058_RS02875 at 65.323 kb on + strand, within HMPREF1058_RS02875 at 65.324 kb on - strand, within HMPREF1058_RS02875 at 65.324 kb on - strand, within HMPREF1058_RS02875 at 65.415 kb on - strand, within HMPREF1058_RS02875 at 65.561 kb on + strand, within HMPREF1058_RS02875 at 65.732 kb on - strand at 65.790 kb on - strand at 65.876 kb on + strand at 65.884 kb on - strand at 65.908 kb on - strand at 66.058 kb on + strand at 66.059 kb on - strand, within HMPREF1058_RS02870 at 66.163 kb on - strand, within HMPREF1058_RS02870 at 66.204 kb on + strand, within HMPREF1058_RS02870 at 66.205 kb on - strand, within HMPREF1058_RS02870 at 66.234 kb on + strand, within HMPREF1058_RS02870 at 66.280 kb on + strand, within HMPREF1058_RS02870 at 66.280 kb on + strand, within HMPREF1058_RS02870 at 66.281 kb on - strand, within HMPREF1058_RS02870 at 66.281 kb on - strand, within HMPREF1058_RS02870 at 66.281 kb on - strand, within HMPREF1058_RS02870 at 66.285 kb on - strand, within HMPREF1058_RS02870 at 66.291 kb on - strand, within HMPREF1058_RS02870 at 66.357 kb on + strand, within HMPREF1058_RS02870 at 66.505 kb on + strand, within HMPREF1058_RS02870 at 66.506 kb on - strand, within HMPREF1058_RS02870 at 66.630 kb on - strand, within HMPREF1058_RS02870 at 66.636 kb on - strand, within HMPREF1058_RS02870
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 63,937 + HMPREF1058_RS02880 0.15 -0.3 63,983 + HMPREF1058_RS02880 0.19 -0.1 64,033 - HMPREF1058_RS02880 0.24 +0.6 64,046 - HMPREF1058_RS02880 0.25 -0.9 64,065 + HMPREF1058_RS02880 0.27 -0.7 64,066 - HMPREF1058_RS02880 0.27 -0.3 64,073 - HMPREF1058_RS02880 0.28 +0.2 64,073 - HMPREF1058_RS02880 0.28 -0.6 64,083 - HMPREF1058_RS02880 0.29 -0.8 64,084 + HMPREF1058_RS02880 0.29 -1.0 64,118 + HMPREF1058_RS02880 0.32 +0.4 64,248 + HMPREF1058_RS02880 0.44 -0.2 64,248 + HMPREF1058_RS02880 0.44 +0.8 64,392 - HMPREF1058_RS02880 0.58 -0.4 64,560 - HMPREF1058_RS02880 0.73 -1.0 64,560 - HMPREF1058_RS02880 0.73 -0.3 64,576 + HMPREF1058_RS02880 0.75 -0.7 64,605 + HMPREF1058_RS02880 0.78 -0.2 64,613 + HMPREF1058_RS02880 0.78 +0.0 64,685 - HMPREF1058_RS02880 0.85 -0.2 64,688 + HMPREF1058_RS02880 0.85 +0.5 64,689 - HMPREF1058_RS02880 0.85 -0.1 64,689 - HMPREF1058_RS02880 0.85 -0.4 64,689 - HMPREF1058_RS02880 0.85 +0.0 64,689 - HMPREF1058_RS02880 0.85 -0.7 64,771 - +0.5 64,793 + +0.9 64,794 - -0.7 64,835 + -0.4 64,835 + +0.4 64,835 + -0.6 64,851 + -0.4 64,925 + -0.2 64,977 + HMPREF1058_RS02875 0.13 +1.5 64,977 + HMPREF1058_RS02875 0.13 +0.5 64,978 - HMPREF1058_RS02875 0.13 -0.8 65,132 + HMPREF1058_RS02875 0.30 -0.4 65,132 + HMPREF1058_RS02875 0.30 +1.3 65,132 + HMPREF1058_RS02875 0.30 +0.7 65,201 + HMPREF1058_RS02875 0.37 -0.3 65,202 - HMPREF1058_RS02875 0.37 +0.2 65,202 - HMPREF1058_RS02875 0.37 +0.6 65,202 - HMPREF1058_RS02875 0.37 +0.7 65,323 + HMPREF1058_RS02875 0.50 +0.1 65,323 + HMPREF1058_RS02875 0.50 +0.6 65,324 - HMPREF1058_RS02875 0.50 +0.4 65,324 - HMPREF1058_RS02875 0.50 +0.2 65,415 - HMPREF1058_RS02875 0.59 -0.1 65,561 + HMPREF1058_RS02875 0.75 +0.7 65,732 - -0.3 65,790 - +0.4 65,876 + -3.4 65,884 - +0.2 65,908 - +0.2 66,058 + +2.0 66,059 - HMPREF1058_RS02870 0.12 +0.0 66,163 - HMPREF1058_RS02870 0.23 +0.6 66,204 + HMPREF1058_RS02870 0.27 -0.4 66,205 - HMPREF1058_RS02870 0.28 -0.7 66,234 + HMPREF1058_RS02870 0.31 +0.0 66,280 + HMPREF1058_RS02870 0.36 +0.9 66,280 + HMPREF1058_RS02870 0.36 -1.0 66,281 - HMPREF1058_RS02870 0.36 +0.6 66,281 - HMPREF1058_RS02870 0.36 +0.4 66,281 - HMPREF1058_RS02870 0.36 +0.1 66,285 - HMPREF1058_RS02870 0.36 +0.1 66,291 - HMPREF1058_RS02870 0.37 -1.5 66,357 + HMPREF1058_RS02870 0.44 +1.4 66,505 + HMPREF1058_RS02870 0.60 -0.1 66,506 - HMPREF1058_RS02870 0.60 +0.8 66,630 - HMPREF1058_RS02870 0.73 -0.1 66,636 - HMPREF1058_RS02870 0.73 -0.2
Or see this region's nucleotide sequence