Experiment: Xylan from corn core 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02795 and HMPREF1058_RS02790 are separated by 1 nucleotides HMPREF1058_RS02790 and HMPREF1058_RS02785 are separated by 64 nucleotides HMPREF1058_RS02785 and HMPREF1058_RS02780 are separated by 284 nucleotides
HMPREF1058_RS02795: HMPREF1058_RS02795 - 3-oxoacyl-[acyl-carrier-protein] reductase, at 91,504 to 92,250
_RS02795
HMPREF1058_RS02790: HMPREF1058_RS02790 - RNA pseudouridine synthase, at 92,252 to 92,923
_RS02790
HMPREF1058_RS02785: HMPREF1058_RS02785 - hypothetical protein, at 92,988 to 93,293
_RS02785
HMPREF1058_RS02780: HMPREF1058_RS02780 - sigma-54-dependent Fis family transcriptional regulator, at 93,578 to 94,960
_RS02780
Position (kb) 92
93
94 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 92.248 kb on + strand at 92.248 kb on + strand at 92.248 kb on + strand at 92.251 kb on + strand at 92.256 kb on + strand at 92.256 kb on + strand at 92.256 kb on + strand at 92.257 kb on - strand at 92.257 kb on - strand at 92.264 kb on + strand at 92.279 kb on - strand at 92.378 kb on + strand, within HMPREF1058_RS02790 at 92.378 kb on + strand, within HMPREF1058_RS02790 at 92.378 kb on + strand, within HMPREF1058_RS02790 at 92.379 kb on - strand, within HMPREF1058_RS02790 at 92.379 kb on - strand, within HMPREF1058_RS02790 at 92.520 kb on - strand, within HMPREF1058_RS02790 at 92.606 kb on + strand, within HMPREF1058_RS02790 at 92.607 kb on - strand, within HMPREF1058_RS02790 at 92.607 kb on - strand, within HMPREF1058_RS02790 at 92.655 kb on - strand, within HMPREF1058_RS02790 at 92.656 kb on + strand, within HMPREF1058_RS02790 at 92.656 kb on + strand, within HMPREF1058_RS02790 at 92.656 kb on + strand, within HMPREF1058_RS02790 at 92.657 kb on - strand, within HMPREF1058_RS02790 at 92.778 kb on - strand, within HMPREF1058_RS02790 at 92.928 kb on - strand at 93.052 kb on - strand, within HMPREF1058_RS02785 at 93.065 kb on - strand, within HMPREF1058_RS02785 at 93.065 kb on - strand, within HMPREF1058_RS02785 at 93.125 kb on - strand, within HMPREF1058_RS02785 at 93.137 kb on + strand, within HMPREF1058_RS02785 at 93.193 kb on - strand, within HMPREF1058_RS02785 at 93.197 kb on + strand, within HMPREF1058_RS02785 at 93.313 kb on + strand at 93.316 kb on + strand at 93.317 kb on - strand at 93.320 kb on - strand at 93.320 kb on - strand at 93.395 kb on + strand at 93.440 kb on - strand at 93.504 kb on - strand at 93.505 kb on + strand at 93.505 kb on + strand at 93.505 kb on + strand at 93.506 kb on - strand at 93.506 kb on - strand at 93.506 kb on - strand at 93.574 kb on - strand at 93.611 kb on + strand at 93.612 kb on - strand at 93.635 kb on + strand at 93.636 kb on - strand at 93.658 kb on + strand at 93.688 kb on + strand at 93.688 kb on + strand at 93.748 kb on + strand, within HMPREF1058_RS02780 at 93.765 kb on + strand, within HMPREF1058_RS02780 at 93.821 kb on + strand, within HMPREF1058_RS02780 at 93.825 kb on - strand, within HMPREF1058_RS02780 at 93.992 kb on - strand, within HMPREF1058_RS02780 at 93.992 kb on - strand, within HMPREF1058_RS02780 at 93.992 kb on - strand, within HMPREF1058_RS02780 at 94.098 kb on - strand, within HMPREF1058_RS02780 at 94.163 kb on + strand, within HMPREF1058_RS02780 at 94.163 kb on + strand, within HMPREF1058_RS02780 at 94.164 kb on - strand, within HMPREF1058_RS02780 at 94.182 kb on - strand, within HMPREF1058_RS02780 at 94.191 kb on - strand, within HMPREF1058_RS02780 at 94.210 kb on + strand, within HMPREF1058_RS02780 at 94.226 kb on + strand, within HMPREF1058_RS02780 at 94.226 kb on + strand, within HMPREF1058_RS02780
Per-strain Table
Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C) remove 92,248 + -0.2 92,248 + +0.3 92,248 + +0.4 92,251 + +0.4 92,256 + +0.5 92,256 + +0.1 92,256 + +0.4 92,257 - +0.1 92,257 - -0.8 92,264 + +0.1 92,279 - +3.2 92,378 + HMPREF1058_RS02790 0.19 -0.4 92,378 + HMPREF1058_RS02790 0.19 +0.9 92,378 + HMPREF1058_RS02790 0.19 +0.5 92,379 - HMPREF1058_RS02790 0.19 +0.5 92,379 - HMPREF1058_RS02790 0.19 -0.2 92,520 - HMPREF1058_RS02790 0.40 +0.3 92,606 + HMPREF1058_RS02790 0.53 +0.5 92,607 - HMPREF1058_RS02790 0.53 -0.6 92,607 - HMPREF1058_RS02790 0.53 -1.6 92,655 - HMPREF1058_RS02790 0.60 +0.4 92,656 + HMPREF1058_RS02790 0.60 +0.0 92,656 + HMPREF1058_RS02790 0.60 +0.5 92,656 + HMPREF1058_RS02790 0.60 +0.4 92,657 - HMPREF1058_RS02790 0.60 -2.1 92,778 - HMPREF1058_RS02790 0.78 +1.7 92,928 - +0.3 93,052 - HMPREF1058_RS02785 0.21 +0.7 93,065 - HMPREF1058_RS02785 0.25 +0.0 93,065 - HMPREF1058_RS02785 0.25 +0.4 93,125 - HMPREF1058_RS02785 0.45 +1.0 93,137 + HMPREF1058_RS02785 0.49 -2.6 93,193 - HMPREF1058_RS02785 0.67 +1.3 93,197 + HMPREF1058_RS02785 0.68 -0.3 93,313 + -0.3 93,316 + -0.2 93,317 - -0.0 93,320 - +0.2 93,320 - -0.4 93,395 + +2.6 93,440 - -0.7 93,504 - +1.1 93,505 + -0.3 93,505 + +1.4 93,505 + -0.8 93,506 - -0.5 93,506 - -0.4 93,506 - -0.3 93,574 - -0.2 93,611 + +0.2 93,612 - +1.0 93,635 + +1.8 93,636 - +0.0 93,658 + +0.7 93,688 + -0.2 93,688 + -0.3 93,748 + HMPREF1058_RS02780 0.12 -0.6 93,765 + HMPREF1058_RS02780 0.14 +1.5 93,821 + HMPREF1058_RS02780 0.18 -0.1 93,825 - HMPREF1058_RS02780 0.18 +0.5 93,992 - HMPREF1058_RS02780 0.30 +0.6 93,992 - HMPREF1058_RS02780 0.30 -0.2 93,992 - HMPREF1058_RS02780 0.30 -0.8 94,098 - HMPREF1058_RS02780 0.38 +0.4 94,163 + HMPREF1058_RS02780 0.42 +0.5 94,163 + HMPREF1058_RS02780 0.42 +0.4 94,164 - HMPREF1058_RS02780 0.42 +0.0 94,182 - HMPREF1058_RS02780 0.44 +0.0 94,191 - HMPREF1058_RS02780 0.44 +0.2 94,210 + HMPREF1058_RS02780 0.46 -0.3 94,226 + HMPREF1058_RS02780 0.47 +0.0 94,226 + HMPREF1058_RS02780 0.47 -0.1
Or see this region's nucleotide sequence