Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS02495

Experiment: Xylan from corn core 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS02500 and HMPREF1058_RS02495 are separated by 458 nucleotidesHMPREF1058_RS02495 and HMPREF1058_RS02490 are separated by 41 nucleotidesHMPREF1058_RS02490 and HMPREF1058_RS02485 are separated by 35 nucleotides HMPREF1058_RS02500: HMPREF1058_RS02500 - histidine decarboxylase, at 168,345 to 168,953 _RS02500 HMPREF1058_RS02495: HMPREF1058_RS02495 - acyl-CoA dehydrogenase family protein, at 169,412 to 171,118 _RS02495 HMPREF1058_RS02490: HMPREF1058_RS02490 - four helix bundle protein, at 171,160 to 171,540 _RS02490 HMPREF1058_RS02485: HMPREF1058_RS02485 - electron transfer flavoprotein subunit alpha/FixB family protein, at 171,576 to 172,595 _RS02485 Position (kb) 169 170 171 172Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 168.480 kb on - strand, within HMPREF1058_RS02500at 168.480 kb on - strand, within HMPREF1058_RS02500at 168.499 kb on - strand, within HMPREF1058_RS02500at 168.532 kb on + strand, within HMPREF1058_RS02500at 168.532 kb on + strand, within HMPREF1058_RS02500at 168.557 kb on + strand, within HMPREF1058_RS02500at 168.618 kb on - strand, within HMPREF1058_RS02500at 168.633 kb on + strand, within HMPREF1058_RS02500at 168.724 kb on + strand, within HMPREF1058_RS02500at 168.725 kb on - strand, within HMPREF1058_RS02500at 168.725 kb on - strand, within HMPREF1058_RS02500at 168.726 kb on + strand, within HMPREF1058_RS02500at 168.726 kb on + strand, within HMPREF1058_RS02500at 168.861 kb on + strand, within HMPREF1058_RS02500at 168.906 kb on + strandat 168.954 kb on - strandat 168.989 kb on + strandat 168.990 kb on - strandat 168.990 kb on - strandat 169.043 kb on + strandat 169.052 kb on + strandat 169.146 kb on + strandat 169.166 kb on + strandat 169.199 kb on + strandat 169.253 kb on - strandat 169.256 kb on + strandat 169.327 kb on + strandat 169.328 kb on - strandat 169.348 kb on + strandat 169.351 kb on - strandat 169.351 kb on - strandat 169.354 kb on - strandat 169.382 kb on - strandat 169.491 kb on + strandat 169.491 kb on + strandat 169.492 kb on - strandat 169.496 kb on + strandat 169.496 kb on + strandat 169.502 kb on + strandat 169.502 kb on + strandat 169.503 kb on - strandat 169.503 kb on - strandat 169.503 kb on - strandat 169.570 kb on + strandat 169.571 kb on - strandat 169.617 kb on - strand, within HMPREF1058_RS02495at 169.617 kb on - strand, within HMPREF1058_RS02495at 169.723 kb on + strand, within HMPREF1058_RS02495at 169.731 kb on + strand, within HMPREF1058_RS02495at 169.753 kb on - strand, within HMPREF1058_RS02495at 169.766 kb on + strand, within HMPREF1058_RS02495at 169.766 kb on + strand, within HMPREF1058_RS02495at 169.843 kb on + strand, within HMPREF1058_RS02495at 169.843 kb on + strand, within HMPREF1058_RS02495at 170.043 kb on + strand, within HMPREF1058_RS02495at 170.124 kb on + strand, within HMPREF1058_RS02495at 170.125 kb on - strand, within HMPREF1058_RS02495at 170.126 kb on + strand, within HMPREF1058_RS02495at 170.126 kb on + strand, within HMPREF1058_RS02495at 170.127 kb on - strand, within HMPREF1058_RS02495at 170.127 kb on - strand, within HMPREF1058_RS02495at 170.165 kb on - strand, within HMPREF1058_RS02495at 170.268 kb on + strand, within HMPREF1058_RS02495at 170.362 kb on + strandat 170.379 kb on - strand, within HMPREF1058_RS02495at 170.384 kb on + strand, within HMPREF1058_RS02495at 170.407 kb on - strand, within HMPREF1058_RS02495at 170.407 kb on - strand, within HMPREF1058_RS02495at 170.462 kb on + strand, within HMPREF1058_RS02495at 170.670 kb on + strand, within HMPREF1058_RS02495at 170.671 kb on - strand, within HMPREF1058_RS02495at 170.989 kb on - strandat 171.020 kb on - strandat 171.096 kb on - strandat 171.129 kb on - strandat 171.132 kb on + strandat 171.132 kb on + strandat 171.132 kb on + strandat 171.145 kb on - strandat 171.145 kb on - strandat 171.151 kb on + strandat 171.161 kb on + strandat 171.161 kb on + strandat 171.161 kb on + strandat 171.162 kb on - strandat 171.239 kb on - strand, within HMPREF1058_RS02490at 171.239 kb on - strand, within HMPREF1058_RS02490at 171.558 kb on - strandat 171.561 kb on + strandat 171.562 kb on - strandat 171.562 kb on - strandat 171.562 kb on - strandat 171.562 kb on - strandat 171.596 kb on - strandat 171.598 kb on + strandat 171.642 kb on + strandat 171.643 kb on - strandat 171.997 kb on + strand, within HMPREF1058_RS02485at 171.997 kb on + strand, within HMPREF1058_RS02485at 171.997 kb on + strand, within HMPREF1058_RS02485at 171.997 kb on + strand, within HMPREF1058_RS02485at 171.998 kb on - strand, within HMPREF1058_RS02485

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylan from corn core 2.5 mg/ml (C)
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168,480 - HMPREF1058_RS02500 0.22 -2.0
168,480 - HMPREF1058_RS02500 0.22 +0.4
168,499 - HMPREF1058_RS02500 0.25 -0.6
168,532 + HMPREF1058_RS02500 0.31 +0.6
168,532 + HMPREF1058_RS02500 0.31 +1.0
168,557 + HMPREF1058_RS02500 0.35 +0.4
168,618 - HMPREF1058_RS02500 0.45 +0.4
168,633 + HMPREF1058_RS02500 0.47 -0.2
168,724 + HMPREF1058_RS02500 0.62 -0.7
168,725 - HMPREF1058_RS02500 0.62 +0.3
168,725 - HMPREF1058_RS02500 0.62 -0.4
168,726 + HMPREF1058_RS02500 0.63 -0.4
168,726 + HMPREF1058_RS02500 0.63 -0.6
168,861 + HMPREF1058_RS02500 0.85 +1.2
168,906 + -1.1
168,954 - -0.2
168,989 + +0.8
168,990 - -0.6
168,990 - -0.1
169,043 + +0.6
169,052 + +0.1
169,146 + -1.1
169,166 + +2.5
169,199 + +0.9
169,253 - +0.2
169,256 + -0.3
169,327 + -1.7
169,328 - +0.7
169,348 + -0.0
169,351 - -0.6
169,351 - +2.4
169,354 - -1.4
169,382 - +2.0
169,491 + +2.2
169,491 + +1.4
169,492 - +2.7
169,496 + -0.6
169,496 + +4.8
169,502 + +1.0
169,502 + +0.9
169,503 - +2.5
169,503 - +2.0
169,503 - +2.4
169,570 + +1.9
169,571 - +2.0
169,617 - HMPREF1058_RS02495 0.12 +2.2
169,617 - HMPREF1058_RS02495 0.12 +3.9
169,723 + HMPREF1058_RS02495 0.18 +1.6
169,731 + HMPREF1058_RS02495 0.19 +1.9
169,753 - HMPREF1058_RS02495 0.20 +2.1
169,766 + HMPREF1058_RS02495 0.21 +3.3
169,766 + HMPREF1058_RS02495 0.21 +2.9
169,843 + HMPREF1058_RS02495 0.25 +3.1
169,843 + HMPREF1058_RS02495 0.25 +2.7
170,043 + HMPREF1058_RS02495 0.37 +2.2
170,124 + HMPREF1058_RS02495 0.42 +2.4
170,125 - HMPREF1058_RS02495 0.42 +2.1
170,126 + HMPREF1058_RS02495 0.42 +1.0
170,126 + HMPREF1058_RS02495 0.42 +3.9
170,127 - HMPREF1058_RS02495 0.42 +5.4
170,127 - HMPREF1058_RS02495 0.42 +1.0
170,165 - HMPREF1058_RS02495 0.44 +1.2
170,268 + HMPREF1058_RS02495 0.50 +1.8
170,362 + +2.4
170,379 - HMPREF1058_RS02495 0.57 +2.6
170,384 + HMPREF1058_RS02495 0.57 +3.4
170,407 - HMPREF1058_RS02495 0.58 +2.5
170,407 - HMPREF1058_RS02495 0.58 +0.0
170,462 + HMPREF1058_RS02495 0.62 +2.3
170,670 + HMPREF1058_RS02495 0.74 +2.2
170,671 - HMPREF1058_RS02495 0.74 +1.9
170,989 - +1.9
171,020 - +1.8
171,096 - +3.4
171,129 - +0.4
171,132 + +2.5
171,132 + +3.6
171,132 + +2.5
171,145 - +0.5
171,145 - +2.0
171,151 + +3.4
171,161 + +4.8
171,161 + +3.0
171,161 + +1.4
171,162 - +0.7
171,239 - HMPREF1058_RS02490 0.21 -0.0
171,239 - HMPREF1058_RS02490 0.21 +0.9
171,558 - +1.0
171,561 + +3.1
171,562 - +0.6
171,562 - -0.2
171,562 - +1.2
171,562 - +1.1
171,596 - +2.3
171,598 + +1.0
171,642 + +3.3
171,643 - +1.9
171,997 + HMPREF1058_RS02485 0.41 +2.7
171,997 + HMPREF1058_RS02485 0.41 +1.6
171,997 + HMPREF1058_RS02485 0.41 +1.9
171,997 + HMPREF1058_RS02485 0.41 +2.5
171,998 - HMPREF1058_RS02485 0.41 +1.4

Or see this region's nucleotide sequence